Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.58582 * 2 1 4 4 C 1.53186 * 109.58881 * 120.44191 * 2 1 3 5 5 C 1.53035 * 109.31830 * 174.43814 * 4 2 1 6 6 H 1.09005 * 109.46348 * 58.62378 * 5 4 2 7 7 N 1.46498 * 109.46484 * 178.60066 * 5 4 2 8 8 C 1.36936 * 120.00211 * 205.02674 * 7 5 4 9 9 H 1.07997 * 119.99870 * 359.72143 * 8 7 5 10 10 C 1.38811 * 120.00173 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00180 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47069 * 60.00291 * 12 10 8 14 14 H 1.48499 * 109.47174 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47081 * 300.00239 * 12 10 8 16 16 C 1.53037 * 109.52685 * 298.61454 * 5 4 2 17 17 C 1.53194 * 109.31308 * 61.36794 * 16 5 4 18 18 N 1.46926 * 109.58919 * 239.71821 * 2 1 3 19 19 C 1.34782 * 120.62886 * 6.58252 * 18 2 1 20 20 O 1.21623 * 119.99767 * 349.78031 * 19 18 2 21 21 C 1.47171 * 119.99892 * 169.79003 * 19 18 2 22 22 C 1.38245 * 128.47216 * 172.16474 * 21 19 18 23 23 N 1.31250 * 111.88728 * 179.80715 * 22 21 19 24 24 N 1.27338 * 120.03533 * 0.53432 * 23 22 21 25 25 S 1.56638 * 109.74037 * 359.69097 * 24 23 22 26 26 H 1.08998 * 109.47132 * 175.69706 * 1 2 3 27 27 H 1.08994 * 109.47099 * 295.69916 * 1 2 3 28 28 H 1.09000 * 109.47208 * 55.70247 * 1 2 3 29 29 H 1.08998 * 109.50945 * 54.47400 * 4 2 1 30 30 H 1.09005 * 109.48743 * 294.38100 * 4 2 1 31 31 H 0.96998 * 119.99809 * 25.02357 * 7 5 4 32 32 H 0.97004 * 120.00251 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.50474 * 181.31868 * 16 5 4 34 34 H 1.09000 * 109.50064 * 301.41920 * 16 5 4 35 35 H 1.09000 * 109.58748 * 65.15587 * 17 16 5 36 36 H 1.09007 * 109.59070 * 185.43925 * 17 16 5 37 37 H 1.07997 * 124.06093 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7312 1.2442 5 6 3.5675 -0.8494 1.1691 6 1 4.0059 0.1461 1.0993 7 7 4.0652 -1.5187 2.3734 8 6 5.3494 -1.3015 2.7962 9 1 5.9967 -0.6403 2.2393 10 6 5.8209 -1.9353 3.9377 11 7 5.0337 -2.7453 4.6134 12 14 7.5730 -1.6396 4.5141 13 1 7.7623 -0.1950 4.8017 14 1 7.8279 -2.4268 5.7472 15 1 8.5213 -2.0613 3.4520 16 6 3.9569 -1.6655 -0.0655 17 6 3.4651 -0.9452 -1.3249 18 7 2.0225 -0.6980 -1.1953 19 6 1.1673 -1.1042 -2.1546 20 8 -0.0320 -1.0640 -1.9567 21 6 1.6848 -1.5965 -3.4414 22 6 0.9883 -2.1874 -4.4791 23 7 1.7757 -2.4995 -5.4817 24 7 3.0240 -2.2578 -5.4110 25 16 3.3552 -1.5835 -4.0365 26 1 -0.3633 -1.0247 -0.0771 27 1 -0.3633 0.4456 0.9260 28 1 -0.3634 0.5791 -0.8490 29 1 1.6031 -1.7273 1.2888 30 1 1.7658 -0.1699 2.1364 31 1 3.4851 -2.1156 2.8714 32 1 5.3630 -3.1879 5.4112 33 1 5.0412 -1.7693 -0.1060 34 1 3.4984 -2.6527 -0.0086 35 1 3.9903 0.0039 -1.4317 36 1 3.6541 -1.5678 -2.1995 37 1 -0.0764 -2.3679 -4.4675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044489000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = 53.430899 kcal Electronic energy + Delta-G solvation = -21878.729896 eV Core-core repulsion = 18591.221438 eV Total energy + Delta-G solvation = -3287.508458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97475 -41.42694 -38.77725 -36.23637 -34.56766 -33.73935 -32.62202 -31.09484 -28.88310 -28.05199 -26.04783 -24.65181 -24.64294 -22.46924 -21.62555 -20.72307 -19.93574 -19.08105 -18.07710 -17.28865 -17.13913 -16.69623 -16.33292 -16.18456 -15.61798 -15.46813 -15.16268 -14.73686 -14.66432 -14.01084 -13.74029 -13.69243 -13.39025 -13.10017 -13.05388 -12.84048 -12.74782 -12.60593 -12.20231 -12.08802 -12.00632 -11.72320 -11.35801 -11.15739 -11.06389 -10.92715 -10.57813 -10.40617 -9.74136 -8.98222 -7.90029 -5.18635 -1.34033 -0.24489 0.42005 0.91176 1.51855 1.53508 1.59397 1.67280 1.85063 2.59773 2.94988 3.26855 3.43127 3.65903 3.72955 3.73895 3.93099 4.03250 4.21345 4.31715 4.49786 4.56262 4.59849 4.68227 4.70155 4.83835 4.98292 5.06655 5.15368 5.24459 5.43684 5.50287 5.57596 5.65380 6.15901 6.31362 6.60755 6.86815 7.38051 8.13887 8.35775 9.33381 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.004068 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.265026 B = 6881.328579 C = 7855.915204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.156 3.844 3 H 0.102 0.898 4 C -0.127 4.127 5 C 0.173 3.827 6 H 0.060 0.940 7 N -0.737 5.737 8 C -0.234 4.234 9 H 0.084 0.916 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.968 3.032 13 H -0.277 1.277 14 H -0.303 1.303 15 H -0.277 1.277 16 C -0.141 4.141 17 C 0.115 3.885 18 N -0.597 5.597 19 C 0.601 3.399 20 O -0.534 6.534 21 C -0.308 4.308 22 C 0.075 3.925 23 N -0.277 5.277 24 N -0.313 5.313 25 S 0.507 5.493 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.370 0.630 32 H 0.248 0.752 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 6.730 -16.558 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.120 0.880 4 C -0.166 4.166 5 C 0.064 3.936 6 H 0.078 0.922 7 N -0.376 5.376 8 C -0.366 4.366 9 H 0.101 0.899 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.203 1.203 14 H -0.230 1.230 15 H -0.203 1.203 16 C -0.182 4.182 17 C -0.011 4.011 18 N -0.330 5.330 19 C 0.387 3.613 20 O -0.413 6.413 21 C -0.449 4.449 22 C -0.092 4.092 23 N -0.140 5.140 24 N -0.293 5.293 25 S 0.643 5.357 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.201 0.799 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.476 6.624 -17.567 19.301 hybrid contribution -0.628 -0.685 1.457 1.728 sum -5.104 5.939 -16.110 17.913 Atomic orbital electron populations 1.22129 0.92392 1.03033 1.01297 1.21405 0.95701 0.95673 0.81811 0.88018 1.22192 0.95783 1.00703 0.97885 1.20431 0.92352 0.95061 0.85720 0.92243 1.42656 1.12172 1.54430 1.28359 1.19624 0.90067 1.21048 1.05884 0.89864 1.25511 1.01750 1.00489 0.99069 1.69813 1.37253 1.35178 1.20077 0.85293 0.80543 0.77400 0.77020 1.20332 1.22972 1.20292 1.22498 1.01768 0.99285 0.94669 1.22222 0.79461 1.02188 0.97207 1.48089 1.07726 1.57043 1.20157 1.16708 0.85693 0.77373 0.81492 1.90893 1.15485 1.55170 1.79748 1.28175 1.00221 1.13694 1.02816 1.24743 1.03778 0.94434 0.86292 1.70884 0.96511 1.19767 1.26875 1.78464 1.11555 1.18758 1.20478 1.82736 1.07354 1.41676 1.03886 0.92368 0.92064 0.91729 0.93131 0.90503 0.79856 0.94287 0.90455 0.93591 0.86727 0.91060 0.75327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 7.60 71.98 0.55 -2.51 16 2 C 0.16 3.55 3.49 44.97 0.16 3.71 16 3 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 4 C -0.13 -3.63 4.84 30.67 0.15 -3.48 16 5 C 0.17 5.72 2.73 45.02 0.12 5.85 16 6 H 0.06 1.89 8.08 -2.38 -0.02 1.87 16 7 N -0.74 -33.87 5.12 -322.83 -1.65 -35.52 16 8 C -0.23 -11.94 9.93 84.03 0.83 -11.10 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 10 C -0.08 -4.15 5.50 84.86 0.47 -3.68 16 11 N -0.97 -57.66 13.06 21.65 0.28 -57.37 16 12 Si 0.97 43.87 29.55 68.60 2.03 45.90 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 15 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 16 C -0.14 -3.97 5.66 30.67 0.17 -3.80 16 17 C 0.11 2.24 5.71 86.36 0.49 2.73 16 18 N -0.60 -13.17 2.97 -799.17 -2.38 -15.54 16 19 C 0.60 14.13 7.56 86.59 0.65 14.78 16 20 O -0.53 -14.81 12.43 -4.10 -0.05 -14.86 16 21 C -0.31 -6.24 6.49 24.62 0.16 -6.08 16 22 C 0.07 1.49 11.56 84.78 0.98 2.47 16 23 N -0.28 -6.47 11.54 -57.86 -0.67 -7.14 16 24 N -0.31 -7.09 12.51 37.02 0.46 -6.62 16 25 S 0.51 8.59 19.38 -56.49 -1.09 7.49 16 26 H 0.06 1.60 6.55 -2.39 -0.02 1.59 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.52 6.95 -2.39 -0.02 1.50 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.37 18.93 7.80 -92.71 -0.72 18.21 16 32 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.23 3.19 -22.84 -0.07 1.15 16 37 H 0.23 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -65.17 312.71 1.99 -63.18 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.32 Total: 21.59 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.74 Total: -1.11 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -3.95 Total: -122.20 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.05 Total: -14.86 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 8.59 SS G_CDS: -1.09 Total: 7.49 kcal Total: -65.17 1.99 -63.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044489000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.613 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds