Wall clock time and date at job start Tue Mar 31 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37476 * 123.35301 * 2 1 4 4 C 1.33818 * 115.09688 * 180.27286 * 3 2 1 5 5 S 1.70609 * 110.95821 * 359.74523 * 4 3 2 6 6 C 1.36650 * 123.35055 * 179.79374 * 2 1 3 7 7 C 1.46580 * 125.45750 * 0.02687 * 6 2 1 8 8 O 1.21704 * 120.00182 * 359.70831 * 7 6 2 9 9 N 1.34778 * 120.00393 * 179.71758 * 7 6 2 10 10 C 1.46494 * 120.00464 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.64420 * 31.85152 * 10 9 7 12 12 C 1.54337 * 111.00188 * 268.77618 * 10 9 7 13 13 N 1.47017 * 107.26706 * 219.60109 * 12 10 9 14 14 C 1.36939 * 125.64726 * 178.85094 * 13 12 10 15 15 H 1.08003 * 119.99984 * 342.94408 * 14 13 12 16 16 C 1.38808 * 120.00034 * 162.94507 * 14 13 12 17 17 N 1.31621 * 119.99791 * 332.14307 * 16 14 13 18 18 Si 1.86799 * 120.00133 * 151.86858 * 16 14 13 19 19 H 1.48499 * 109.47248 * 270.27684 * 18 16 14 20 20 H 1.48498 * 109.47068 * 30.27326 * 18 16 14 21 21 H 1.48493 * 109.47381 * 150.27367 * 18 16 14 22 22 C 1.47418 * 108.70401 * 358.58442 * 13 12 10 23 23 C 1.54916 * 104.83113 * 24.35737 * 22 13 12 24 24 H 1.08998 * 111.00226 * 81.06601 * 23 22 13 25 25 O 1.42900 * 111.00282 * 204.87893 * 23 22 13 26 26 H 1.09002 * 109.46961 * 270.20494 * 1 2 3 27 27 H 1.08999 * 109.47048 * 30.20317 * 1 2 3 28 28 H 1.08994 * 109.47312 * 150.20780 * 1 2 3 29 29 H 1.07993 * 122.44568 * 359.97438 * 3 2 1 30 30 H 1.08001 * 124.51860 * 179.72799 * 4 3 2 31 31 H 0.97001 * 119.99699 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.99092 * 100.12144 * 12 10 9 33 33 H 1.09008 * 109.77657 * 338.96117 * 12 10 9 34 34 H 0.96997 * 120.00038 * 353.69163 * 17 16 14 35 35 H 1.09001 * 110.36701 * 143.19505 * 22 13 12 36 36 H 1.09000 * 110.37153 * 265.51974 * 22 13 12 37 37 H 0.96709 * 113.99516 * 298.54258 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 -0.0058 5 16 3.9623 -0.7081 -0.0045 6 6 2.2583 -1.1415 0.0041 7 6 1.7284 -2.5081 0.0085 8 8 0.5257 -2.6945 0.0140 9 7 2.5730 -3.5585 0.0066 10 6 2.0434 -4.9243 0.0115 11 1 1.0942 -4.9704 -0.5224 12 6 1.8787 -5.4485 1.4537 13 7 2.2917 -6.8595 1.4550 14 6 2.3154 -7.6831 2.5488 15 1 2.2853 -7.2618 3.5428 16 6 2.3781 -9.0595 2.3800 17 7 1.8819 -9.6125 1.2935 18 14 3.1735 -10.1260 3.6911 19 1 4.6230 -10.2682 3.4014 20 1 2.9947 -9.4909 5.0215 21 1 2.5353 -11.4668 3.6929 22 6 2.6700 -7.2426 0.0827 23 6 3.0684 -5.9127 -0.6047 24 1 4.0886 -5.6295 -0.3459 25 8 2.9081 -6.0006 -2.0220 26 1 -0.3633 0.0037 1.0277 27 1 -0.3633 0.8881 -0.5170 28 1 -0.3633 -0.8918 -0.5106 29 1 1.8201 2.1334 -0.0004 30 1 4.3206 1.7489 -0.0108 31 1 3.5315 -3.4099 0.0019 32 1 0.8367 -5.3669 1.7632 33 1 2.5141 -4.8756 2.1292 34 1 1.3920 -9.0717 0.6544 35 1 3.5166 -7.9291 0.1002 36 1 1.8230 -7.6966 -0.4317 37 1 3.4600 -6.6764 -2.4390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076682013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:11 Heat of formation + Delta-G solvation = -26.216664 kcal Electronic energy + Delta-G solvation = -21553.242877 eV Core-core repulsion = 18229.987890 eV Total energy + Delta-G solvation = -3323.254987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99044 -38.53885 -37.52469 -35.30873 -34.25356 -31.92191 -31.04252 -28.99979 -28.00083 -26.90901 -24.34844 -23.66239 -21.74573 -20.80349 -20.22405 -18.94237 -18.30938 -17.60214 -17.01414 -16.04042 -15.75580 -15.22662 -15.06492 -14.32231 -14.16478 -13.77113 -13.64142 -13.55232 -13.40332 -13.08518 -12.61069 -12.49343 -12.26145 -12.23110 -11.90823 -11.67961 -11.53348 -11.08940 -10.77535 -10.58834 -10.16627 -10.07624 -10.00449 -9.74819 -9.48441 -9.10797 -8.83320 -8.63490 -8.46182 -7.04153 -6.15221 -3.22523 0.35284 1.29482 1.68489 2.21145 3.16040 3.21601 3.49126 3.50425 3.67824 4.29262 4.57442 4.64090 4.76674 5.02156 5.02940 5.14443 5.25977 5.39120 5.41155 5.50706 5.55257 5.64905 5.74117 5.85229 5.90025 5.93039 6.16655 6.27126 6.43731 6.56140 6.68262 6.79159 6.85584 7.53333 7.69905 7.88480 8.24004 8.41527 8.93809 9.73607 10.25033 11.16478 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.003593 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.787583 B = 7791.472097 C = 7869.731407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.024 4.024 3 C -0.148 4.148 4 C -0.230 4.230 5 S 0.194 5.806 6 C -0.267 4.267 7 C 0.591 3.409 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.144 3.856 11 H 0.106 0.894 12 C 0.129 3.871 13 N -0.598 5.598 14 C -0.339 4.339 15 H 0.069 0.931 16 C -0.024 4.024 17 N -0.915 5.915 18 Si 1.070 2.930 19 H -0.293 1.293 20 H -0.292 1.292 21 H -0.289 1.289 22 C 0.120 3.880 23 C 0.076 3.924 24 H 0.066 0.934 25 O -0.562 6.562 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.395 0.605 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.269 0.731 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.629 19.881 -5.156 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.039 4.039 3 C -0.179 4.179 4 C -0.368 4.368 5 S 0.462 5.538 6 C -0.388 4.388 7 C 0.377 3.623 8 O -0.402 6.402 9 N -0.361 5.361 10 C 0.039 3.961 11 H 0.124 0.876 12 C 0.002 3.998 13 N -0.326 5.326 14 C -0.466 4.466 15 H 0.087 0.913 16 C -0.226 4.226 17 N -0.556 5.556 18 Si 0.899 3.101 19 H -0.220 1.220 20 H -0.218 1.218 21 H -0.216 1.216 22 C -0.007 4.007 23 C 0.016 3.984 24 H 0.084 0.916 25 O -0.367 6.367 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.186 0.814 31 H 0.229 0.771 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.180 17.784 -4.575 19.375 hybrid contribution -0.769 2.251 -0.370 2.407 sum 5.411 20.035 -4.945 21.334 Atomic orbital electron populations 1.20744 0.88612 1.03915 1.03152 1.19551 0.97980 0.90341 0.95996 1.19930 0.92572 0.99649 1.05781 1.25239 1.00670 1.01785 1.09095 1.83029 1.04334 0.98252 1.68157 1.24478 0.97118 0.97498 1.19656 1.16888 0.86275 0.82710 0.76392 1.90788 1.14237 1.85117 1.50049 1.45805 1.09270 1.05916 1.75066 1.22011 0.98095 0.78600 0.97379 0.87607 1.21692 0.98382 0.87313 0.92417 1.44382 1.76512 1.06920 1.04816 1.19814 1.52167 0.89302 0.85347 0.91340 1.25810 0.99965 0.94217 1.02621 1.70758 1.33260 1.38174 1.13416 0.83449 0.76404 0.75755 0.74488 1.22033 1.21798 1.21554 1.22170 0.98972 0.93012 0.86522 1.23370 0.97221 0.97242 0.80561 0.91590 1.86459 1.69294 1.61246 1.19681 0.90601 0.91756 0.88734 0.83811 0.81434 0.77085 0.94551 0.94916 0.91913 0.92354 0.94249 0.77409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.55 36.01 0.34 -0.88 16 2 C -0.02 -0.29 5.90 -105.47 -0.62 -0.91 16 3 C -0.15 -1.40 9.97 -41.41 -0.41 -1.82 16 4 C -0.23 -1.97 10.92 29.18 0.32 -1.65 16 5 S 0.19 1.92 22.16 -107.50 -2.38 -0.46 16 6 C -0.27 -3.58 6.45 -36.79 -0.24 -3.81 16 7 C 0.59 9.74 7.78 -12.90 -0.10 9.64 16 8 O -0.52 -10.15 13.89 5.18 0.07 -10.08 16 9 N -0.71 -11.28 5.11 -53.36 -0.27 -11.55 16 10 C 0.14 2.72 3.04 -66.09 -0.20 2.52 16 11 H 0.11 2.21 7.55 -51.93 -0.39 1.82 16 12 C 0.13 2.83 7.01 -3.06 -0.02 2.81 16 13 N -0.60 -15.20 3.29 -170.06 -0.56 -15.76 16 14 C -0.34 -9.57 10.02 -15.06 -0.15 -9.72 16 15 H 0.07 1.94 7.97 -52.48 -0.42 1.52 16 16 C -0.02 -0.69 5.09 -17.43 -0.09 -0.77 16 17 N -0.92 -27.42 12.92 55.49 0.72 -26.71 16 18 Si 1.07 25.14 30.00 -169.99 -5.10 20.04 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.12 2.72 5.03 -2.53 -0.01 2.71 16 23 C 0.08 1.38 4.06 -24.58 -0.10 1.28 16 24 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 25 O -0.56 -9.19 13.47 -35.23 -0.47 -9.66 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.32 6.02 -51.93 -0.31 1.01 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.39 5.29 7.68 -40.82 -0.31 4.98 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.70 8.03 -51.92 -0.42 0.29 16 34 H 0.27 8.13 6.05 -40.82 -0.25 7.89 16 35 H 0.06 1.40 7.94 -51.93 -0.41 0.98 16 36 H 0.04 0.98 6.81 -51.93 -0.35 0.62 16 37 H 0.38 4.57 9.11 45.56 0.42 4.99 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -33.69 322.69 -8.20 -41.89 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.78 Total: 8.05 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.29 Total: -0.62 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.12 Total: -54.01 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.40 Total: -19.74 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.04 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.38 Total: -0.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.69 -8.20 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076682013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.669 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds