Wall clock time and date at job start Tue Mar 31 2020 04:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37476 * 123.35301 * 2 1 4 4 C 1.33818 * 115.09688 * 180.27286 * 3 2 1 5 5 S 1.70609 * 110.95821 * 359.74523 * 4 3 2 6 6 C 1.36650 * 123.35055 * 179.79374 * 2 1 3 7 7 C 1.46580 * 125.45750 * 0.02687 * 6 2 1 8 8 O 1.21704 * 120.00182 * 359.70831 * 7 6 2 9 9 N 1.34778 * 120.00393 * 179.71758 * 7 6 2 10 10 C 1.46494 * 120.00464 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.64420 * 31.85152 * 10 9 7 12 12 C 1.54337 * 111.00188 * 268.77618 * 10 9 7 13 13 N 1.47017 * 107.26706 * 219.60109 * 12 10 9 14 14 C 1.36939 * 125.64726 * 178.85094 * 13 12 10 15 15 H 1.08003 * 119.99984 * 342.94408 * 14 13 12 16 16 C 1.38808 * 120.00034 * 162.94507 * 14 13 12 17 17 N 1.31621 * 119.99791 * 332.14307 * 16 14 13 18 18 Si 1.86799 * 120.00133 * 151.86858 * 16 14 13 19 19 H 1.48499 * 109.47248 * 270.27684 * 18 16 14 20 20 H 1.48498 * 109.47068 * 30.27326 * 18 16 14 21 21 H 1.48493 * 109.47381 * 150.27367 * 18 16 14 22 22 C 1.47418 * 108.70401 * 358.58442 * 13 12 10 23 23 C 1.54916 * 104.83113 * 24.35737 * 22 13 12 24 24 H 1.08998 * 111.00226 * 81.06601 * 23 22 13 25 25 O 1.42900 * 111.00282 * 204.87893 * 23 22 13 26 26 H 1.09002 * 109.46961 * 270.20494 * 1 2 3 27 27 H 1.08999 * 109.47048 * 30.20317 * 1 2 3 28 28 H 1.08994 * 109.47312 * 150.20780 * 1 2 3 29 29 H 1.07993 * 122.44568 * 359.97438 * 3 2 1 30 30 H 1.08001 * 124.51860 * 179.72799 * 4 3 2 31 31 H 0.97001 * 119.99699 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.99092 * 100.12144 * 12 10 9 33 33 H 1.09008 * 109.77657 * 338.96117 * 12 10 9 34 34 H 0.96997 * 120.00038 * 353.69163 * 17 16 14 35 35 H 1.09001 * 110.36701 * 143.19505 * 22 13 12 36 36 H 1.09000 * 110.37153 * 265.51974 * 22 13 12 37 37 H 0.96709 * 113.99516 * 298.54258 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 -0.0058 5 16 3.9623 -0.7081 -0.0045 6 6 2.2583 -1.1415 0.0041 7 6 1.7284 -2.5081 0.0085 8 8 0.5257 -2.6945 0.0140 9 7 2.5730 -3.5585 0.0066 10 6 2.0434 -4.9243 0.0115 11 1 1.0942 -4.9704 -0.5224 12 6 1.8787 -5.4485 1.4537 13 7 2.2917 -6.8595 1.4550 14 6 2.3154 -7.6831 2.5488 15 1 2.2853 -7.2618 3.5428 16 6 2.3781 -9.0595 2.3800 17 7 1.8819 -9.6125 1.2935 18 14 3.1735 -10.1260 3.6911 19 1 4.6230 -10.2682 3.4014 20 1 2.9947 -9.4909 5.0215 21 1 2.5353 -11.4668 3.6929 22 6 2.6700 -7.2426 0.0827 23 6 3.0684 -5.9127 -0.6047 24 1 4.0886 -5.6295 -0.3459 25 8 2.9081 -6.0006 -2.0220 26 1 -0.3633 0.0037 1.0277 27 1 -0.3633 0.8881 -0.5170 28 1 -0.3633 -0.8918 -0.5106 29 1 1.8201 2.1334 -0.0004 30 1 4.3206 1.7489 -0.0108 31 1 3.5315 -3.4099 0.0019 32 1 0.8367 -5.3669 1.7632 33 1 2.5141 -4.8756 2.1292 34 1 1.3920 -9.0717 0.6544 35 1 3.5166 -7.9291 0.1002 36 1 1.8230 -7.6966 -0.4317 37 1 3.4600 -6.6764 -2.4390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076682013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:10 Heat of formation + Delta-G solvation = -52.082676 kcal Electronic energy + Delta-G solvation = -21554.364511 eV Core-core repulsion = 18229.987890 eV Total energy + Delta-G solvation = -3324.376621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30679 -39.88552 -38.64612 -36.91959 -35.80617 -33.80977 -31.91333 -30.51345 -29.58126 -28.38313 -26.22794 -24.56529 -23.01197 -22.48702 -21.85711 -20.10574 -19.60592 -19.24908 -18.40867 -17.33393 -17.00043 -16.40692 -16.30758 -15.90397 -15.77156 -15.40457 -15.25849 -14.74095 -14.61874 -14.24702 -14.12424 -14.00891 -13.42716 -13.31692 -13.23433 -13.07349 -12.72958 -12.67839 -12.53534 -11.89105 -11.88982 -11.81368 -11.74751 -11.28531 -11.00802 -10.63372 -10.38543 -9.80100 -9.40387 -9.15500 -8.39148 -5.44255 -0.52072 0.48089 0.92064 1.36527 1.58494 1.65888 1.83854 1.86972 2.05879 2.58681 2.86419 3.13111 3.41376 3.56890 3.74705 3.87580 3.90294 3.96313 4.20290 4.22738 4.34670 4.38446 4.65111 4.68019 4.73288 4.77800 4.83961 4.97855 5.00053 5.06427 5.24497 5.36791 5.50383 5.58072 6.21610 6.30387 6.70313 6.77529 7.00439 7.59674 8.13573 8.91186 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.003593 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.787583 B = 7791.472097 C = 7869.731407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.024 4.024 3 C -0.159 4.159 4 C -0.208 4.208 5 S 0.227 5.773 6 C -0.315 4.315 7 C 0.587 3.413 8 O -0.565 6.565 9 N -0.701 5.701 10 C 0.158 3.842 11 H 0.081 0.919 12 C 0.131 3.869 13 N -0.617 5.617 14 C -0.353 4.353 15 H 0.063 0.937 16 C -0.073 4.073 17 N -0.940 5.940 18 Si 1.124 2.876 19 H -0.277 1.277 20 H -0.273 1.273 21 H -0.294 1.294 22 C 0.124 3.876 23 C 0.103 3.897 24 H 0.097 0.903 25 O -0.564 6.564 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.172 0.828 30 H 0.205 0.795 31 H 0.410 0.590 32 H 0.010 0.990 33 H 0.043 0.957 34 H 0.254 0.746 35 H 0.044 0.956 36 H 0.012 0.988 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.190 22.339 -5.118 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.040 4.040 3 C -0.190 4.190 4 C -0.346 4.346 5 S 0.495 5.505 6 C -0.435 4.435 7 C 0.376 3.624 8 O -0.446 6.446 9 N -0.352 5.352 10 C 0.052 3.948 11 H 0.099 0.901 12 C 0.004 3.996 13 N -0.345 5.345 14 C -0.481 4.481 15 H 0.080 0.920 16 C -0.269 4.269 17 N -0.582 5.582 18 Si 0.947 3.053 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.220 1.220 22 C -0.003 4.003 23 C 0.042 3.958 24 H 0.114 0.886 25 O -0.372 6.372 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.189 0.811 30 H 0.222 0.778 31 H 0.246 0.754 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.783 20.276 -4.561 22.563 hybrid contribution -1.592 1.608 -0.410 2.300 sum 7.191 21.885 -4.971 23.566 Atomic orbital electron populations 1.20718 0.89032 1.03727 1.02982 1.19859 0.98198 0.91101 0.94859 1.20122 0.92788 0.99820 1.06244 1.25753 1.01103 1.01877 1.05856 1.82877 1.01123 0.99144 1.67350 1.24277 0.99893 0.95854 1.23433 1.17400 0.85793 0.83987 0.75201 1.90767 1.16028 1.85981 1.51861 1.45585 1.10043 1.04477 1.75139 1.21532 0.97760 0.80580 0.94977 0.90083 1.21708 0.96832 0.86155 0.94885 1.44627 1.76805 1.07817 1.05281 1.20086 1.51813 0.90098 0.86148 0.91960 1.27299 0.99868 0.95776 1.03948 1.70883 1.34919 1.38065 1.14362 0.82747 0.75989 0.73788 0.72782 1.20364 1.19838 1.22015 1.22105 0.97264 0.95285 0.85598 1.23029 0.98002 0.93645 0.81075 0.88588 1.86432 1.70272 1.62135 1.18337 0.90774 0.88966 0.91788 0.81073 0.77789 0.75355 0.97226 0.93930 0.93520 0.93786 0.97053 0.74928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.55 71.24 0.68 -1.75 16 2 C -0.02 -0.54 5.90 -20.42 -0.12 -0.66 16 3 C -0.16 -2.47 9.97 21.08 0.21 -2.26 16 4 C -0.21 -2.66 10.92 66.81 0.73 -1.93 16 5 S 0.23 3.81 22.16 -56.49 -1.25 2.56 16 6 C -0.31 -8.13 6.45 24.08 0.16 -7.98 16 7 C 0.59 19.67 7.78 86.42 0.67 20.34 16 8 O -0.57 -23.10 13.89 -4.36 -0.06 -23.16 16 9 N -0.70 -22.09 5.11 -440.95 -2.25 -24.35 16 10 C 0.16 6.08 3.04 46.18 0.14 6.22 16 11 H 0.08 3.56 7.55 -2.39 -0.02 3.54 16 12 C 0.13 5.95 7.01 86.73 0.61 6.56 16 13 N -0.62 -32.28 3.29 -691.96 -2.28 -34.56 16 14 C -0.35 -20.38 10.02 84.03 0.84 -19.54 16 15 H 0.06 3.59 7.97 -2.91 -0.02 3.56 16 16 C -0.07 -4.17 5.09 84.86 0.43 -3.74 16 17 N -0.94 -57.84 12.92 21.65 0.28 -57.56 16 18 Si 1.12 50.75 30.00 68.60 2.06 52.81 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 C 0.12 5.77 5.03 86.86 0.44 6.21 16 23 C 0.10 3.65 4.06 31.99 0.13 3.78 16 24 H 0.10 2.90 8.01 -2.39 -0.02 2.88 16 25 O -0.56 -17.76 13.47 -148.98 -2.01 -19.77 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.88 6.02 -2.39 -0.01 1.87 16 29 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 31 H 0.41 10.33 7.68 -92.71 -0.71 9.62 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.04 1.85 8.03 -2.38 -0.02 1.83 16 34 H 0.25 16.06 6.05 -92.71 -0.56 15.50 16 35 H 0.04 2.15 7.94 -2.39 -0.02 2.13 16 36 H 0.01 0.61 6.81 -2.39 -0.02 0.59 16 37 H 0.40 8.94 9.11 -74.05 -0.67 8.27 16 Total: -1.00 -76.45 322.69 -0.66 -77.11 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.06 Total: 21.67 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.92 Total: 5.24 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -4.25 Total: -116.46 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -2.07 Total: -42.93 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.06 Total: 52.81 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.25 Total: 2.56 kcal Total: -76.45 -0.66 -77.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076682013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.024 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds