Wall clock time and date at job start Tue Mar 31 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47014 * 269.99985 * 3 2 1 5 5 H 1.48503 * 109.46841 * 29.99738 * 3 2 1 6 6 H 1.48496 * 109.46956 * 149.99994 * 3 2 1 7 7 C 1.38809 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00159 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99714 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47221 * 34.99507 * 10 9 7 12 12 C 1.53004 * 109.46667 * 274.99597 * 10 9 7 13 13 C 1.53005 * 109.46770 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47206 * 60.00338 * 13 12 10 15 15 C 1.53004 * 109.46980 * 299.99533 * 14 13 12 16 16 C 1.52994 * 109.47100 * 155.00062 * 10 9 7 17 17 H 1.08999 * 109.47537 * 59.99638 * 16 10 9 18 18 N 1.46499 * 109.47018 * 299.99452 * 16 10 9 19 19 C 1.34777 * 120.00040 * 154.99744 * 18 16 10 20 20 O 1.21628 * 120.00285 * 0.02562 * 19 18 16 21 21 C 1.47176 * 120.00222 * 179.97438 * 19 18 16 22 22 C 1.38247 * 128.47678 * 180.02562 * 21 19 18 23 23 N 1.31234 * 111.88543 * 180.25367 * 22 21 19 24 24 N 1.27339 * 120.03998 * 359.45464 * 23 22 21 25 25 S 1.56636 * 109.73725 * 0.53439 * 24 23 22 26 26 H 0.97003 * 120.00101 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00441 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47227 * 299.99907 * 12 10 9 29 29 H 1.09001 * 109.47423 * 60.00465 * 12 10 9 30 30 H 1.09007 * 109.46742 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47013 * 299.99846 * 13 12 10 32 32 H 1.08999 * 109.47537 * 59.99828 * 14 13 12 33 33 H 1.08996 * 109.47176 * 180.02562 * 14 13 12 34 34 H 1.08999 * 109.47227 * 300.00485 * 15 14 13 35 35 H 1.09001 * 109.47423 * 179.97438 * 15 14 13 36 36 H 0.96998 * 120.00164 * 335.00180 * 18 16 10 37 37 H 1.08002 * 124.05342 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4350 13 6 3.1874 -5.3616 -1.4339 14 6 2.3093 -6.4563 -0.8247 15 6 1.9444 -6.0769 0.6120 16 6 1.1804 -4.7518 0.6111 17 1 0.2701 -4.8583 0.0210 18 7 0.8310 -4.3885 1.9866 19 6 -0.2874 -4.8851 2.5514 20 8 -1.0065 -5.6352 1.9192 21 6 -0.6382 -4.5206 3.9335 22 6 -1.7311 -4.9231 4.6783 23 7 -1.7262 -4.3943 5.8793 24 7 -0.7776 -3.6213 6.2316 25 16 0.2382 -3.4581 5.0505 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 1.5126 -4.1427 -2.0250 29 1 3.0482 -3.2561 -1.8692 30 1 3.4477 -5.6316 -2.4574 31 1 4.0976 -5.2554 -0.8437 32 1 1.3990 -6.5624 -1.4148 33 1 2.8540 -7.4004 -0.8235 34 1 2.8547 -5.9708 1.2021 35 1 1.3184 -6.8566 1.0459 36 1 1.4046 -3.7906 2.4909 37 1 -2.4993 -5.5891 4.3137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085142480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:59 Heat of formation + Delta-G solvation = 34.867809 kcal Electronic energy + Delta-G solvation = -21815.303183 eV Core-core repulsion = 18526.989769 eV Total energy + Delta-G solvation = -3288.313414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83740 -39.78416 -37.89934 -34.15671 -33.96386 -32.14473 -31.23009 -29.58831 -28.06590 -27.11742 -23.84736 -23.44721 -21.72107 -21.15251 -20.47410 -19.72867 -19.08256 -17.60563 -16.96971 -16.10745 -15.88421 -15.37479 -14.77296 -14.66988 -14.29973 -14.01755 -13.75798 -13.62462 -13.06188 -12.82719 -12.69916 -12.29211 -12.21032 -11.94916 -11.16647 -10.99269 -10.95857 -10.83812 -10.67270 -10.42337 -10.32877 -10.23667 -10.11777 -10.02649 -9.86102 -9.78533 -9.73332 -9.00907 -8.83071 -7.07982 -5.85813 -3.16340 -0.27788 0.80004 1.46042 1.95008 3.03233 3.15832 3.36554 3.41977 3.44170 3.99133 4.48270 4.67259 4.75937 4.96540 5.05322 5.20923 5.41358 5.44437 5.52287 5.62055 5.70716 5.79414 5.85221 5.88661 6.03665 6.20376 6.33401 6.37963 6.38596 6.49098 6.67195 6.79065 6.96498 7.50562 7.60503 7.63019 8.17896 8.30974 9.43080 9.97910 10.33029 11.35857 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.006301 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.768771 B = 4442.374635 C = 6519.548514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.172 3.828 11 H 0.053 0.947 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.140 3.860 17 H 0.090 0.910 18 N -0.695 5.695 19 C 0.601 3.399 20 O -0.526 6.526 21 C -0.278 4.278 22 C 0.067 3.933 23 N -0.256 5.256 24 N -0.266 5.266 25 S 0.438 5.562 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.403 0.597 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -11.963 5.204 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.071 0.929 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.036 3.964 17 H 0.108 0.892 18 N -0.345 5.345 19 C 0.384 3.616 20 O -0.403 6.403 21 C -0.419 4.419 22 C -0.100 4.100 23 N -0.120 5.120 24 N -0.248 5.248 25 S 0.572 5.428 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.238 0.762 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.307 -11.251 6.316 13.603 hybrid contribution -0.372 0.508 -0.874 1.077 sum 3.935 -10.743 5.442 12.669 Atomic orbital electron populations 1.69663 1.05103 1.25758 1.57078 1.24737 0.95437 0.97652 1.02718 0.86248 0.78670 0.83989 0.77586 1.21714 1.21824 1.20716 1.19190 0.90939 0.83903 1.43412 0.91096 1.42429 1.05801 0.99467 1.88630 1.20483 0.93887 0.85658 0.93816 0.92947 1.22218 1.00060 0.95603 0.99474 1.21591 0.98530 0.95624 1.00094 1.21468 1.00013 0.98127 0.95545 1.21882 1.00080 0.96945 0.97507 1.21439 0.99528 0.94455 0.81002 0.89241 1.45818 1.24167 1.48465 1.16009 1.16450 0.81550 0.80778 0.82857 1.90822 1.50809 1.36379 1.62279 1.28162 1.02862 1.08129 1.02758 1.24418 0.98198 0.99799 0.87618 1.70679 1.16917 1.07755 1.16664 1.78798 1.04793 1.17227 1.23956 1.82797 1.27602 1.32864 0.99510 0.93440 0.78139 0.92357 0.91448 0.92585 0.92323 0.91850 0.92242 0.91828 0.91751 0.76221 0.76948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.22 4.95 -53.43 -0.26 -16.48 16 10 C 0.17 2.98 2.29 -67.93 -0.16 2.82 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.12 5.50 -26.73 -0.15 -2.27 16 13 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 14 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 15 C -0.12 -1.58 5.49 -26.75 -0.15 -1.73 16 16 C 0.14 2.16 1.97 -67.96 -0.13 2.03 16 17 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 18 N -0.70 -10.38 4.91 -54.99 -0.27 -10.65 16 19 C 0.60 9.34 7.77 -12.63 -0.10 9.24 16 20 O -0.53 -9.45 16.64 5.25 0.09 -9.36 16 21 C -0.28 -3.79 6.81 -35.95 -0.24 -4.03 16 22 C 0.07 0.86 11.55 -17.80 -0.21 0.66 16 23 N -0.26 -3.64 11.54 30.36 0.35 -3.29 16 24 N -0.27 -3.76 12.51 60.35 0.75 -3.00 16 25 S 0.44 5.33 23.05 -107.50 -2.48 2.86 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 5.65 8.03 -40.82 -0.33 5.32 16 37 H 0.21 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -29.85 327.01 -7.69 -37.54 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.81 Total: 10.23 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.69 Total: -3.05 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 1.30 Total: -59.40 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -2.48 Total: 2.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.85 -7.69 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085142480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.413 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds