Wall clock time and date at job start Tue Mar 31 2020 04:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48507 * 109.46816 * 270.00047 * 3 2 1 5 5 H 1.48496 * 109.47253 * 29.99794 * 3 2 1 6 6 H 1.48496 * 109.47497 * 150.00303 * 3 2 1 7 7 C 1.38814 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01780 * 33.60688 * 10 9 7 12 12 C 1.54268 * 110.03403 * 272.16371 * 10 9 7 13 13 C 1.54887 * 104.19666 * 264.32820 * 12 10 9 14 14 C 1.54894 * 102.74550 * 322.05328 * 13 12 10 15 15 H 1.08991 * 110.60090 * 279.20560 * 14 13 12 16 16 C 1.53005 * 110.48344 * 156.62001 * 14 13 12 17 17 N 1.46505 * 109.46904 * 70.22741 * 16 14 13 18 18 C 1.34777 * 119.99724 * 180.02562 * 17 16 14 19 19 O 1.21603 * 120.00258 * 359.97438 * 18 17 16 20 20 C 1.47445 * 119.99414 * 179.72682 * 18 17 16 21 21 C 1.37985 * 124.14999 * 180.27464 * 20 18 17 22 22 S 1.72103 * 104.03214 * 179.97438 * 21 20 18 23 23 N 1.56401 * 96.15513 * 359.97438 * 22 21 20 24 24 N 1.27414 * 109.87651 * 359.75198 * 23 22 21 25 25 C 1.53877 * 110.03212 * 154.99804 * 10 9 7 26 26 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99395 * 359.97438 * 9 7 2 28 28 H 1.09004 * 110.48088 * 23.00744 * 12 10 9 29 29 H 1.09003 * 110.48519 * 145.51612 * 12 10 9 30 30 H 1.08999 * 110.75114 * 203.74290 * 13 12 10 31 31 H 1.08990 * 110.75473 * 80.37037 * 13 12 10 32 32 H 1.09003 * 109.47270 * 310.23301 * 16 14 13 33 33 H 1.08993 * 109.47355 * 190.22844 * 16 14 13 34 34 H 0.97000 * 119.99792 * 359.97438 * 17 16 14 35 35 H 1.07995 * 127.98669 * 359.97438 * 21 20 18 36 36 H 1.09000 * 110.03023 * 359.97438 * 25 10 9 37 37 H 1.09000 * 110.03119 * 238.57427 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5534 0.5674 12 6 2.3697 -4.0871 -1.4478 13 6 1.2214 -5.0614 -1.8100 14 6 0.9997 -5.8354 -0.4867 15 1 1.7391 -6.6287 -0.3780 16 6 -0.4159 -6.4138 -0.4355 17 7 -0.5328 -7.5052 -1.4058 18 6 -1.6993 -8.1675 -1.5377 19 8 -2.6544 -7.8595 -0.8510 20 6 -1.8187 -9.2619 -2.5185 21 6 -2.9707 -9.9919 -2.7282 22 16 -2.5371 -11.1105 -3.9621 23 7 -1.0590 -10.6237 -4.1180 24 7 -0.8326 -9.6619 -3.3135 25 6 1.1869 -4.7684 0.6116 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.3611 -3.2233 -2.1125 29 1 3.3330 -4.5949 -1.4959 30 1 1.5268 -5.7389 -2.6073 31 1 0.3231 -4.5120 -2.0914 32 1 -1.1365 -5.6329 -0.6785 33 1 -0.6167 -6.7948 0.5658 34 1 0.2290 -7.7506 -1.9538 35 1 -3.9242 -9.8858 -2.2324 36 1 0.2193 -4.3638 0.9085 37 1 1.6898 -5.2050 1.4745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086769229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:05 Heat of formation + Delta-G solvation = 36.339030 kcal Electronic energy + Delta-G solvation = -20775.504474 eV Core-core repulsion = 17487.254857 eV Total energy + Delta-G solvation = -3288.249617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42060 -39.53647 -38.09312 -35.02405 -33.31818 -32.52099 -30.69559 -29.07429 -27.71592 -27.09992 -24.92436 -23.30122 -22.90111 -21.16005 -20.15281 -19.44589 -18.94770 -17.19772 -17.06743 -16.42120 -16.21335 -15.83288 -15.28134 -14.90284 -14.68787 -14.21715 -13.67001 -13.38134 -13.20508 -13.01062 -12.64051 -12.47667 -12.22807 -11.40685 -11.18108 -10.90096 -10.75384 -10.72164 -10.57377 -10.48749 -10.47696 -10.39187 -10.33246 -10.23031 -10.15801 -9.89533 -9.60252 -9.18028 -8.85757 -6.91107 -5.74025 -3.02145 -0.34597 0.50457 1.09930 1.12250 2.87960 2.92525 3.44896 3.48804 3.50227 3.51798 4.30083 4.56522 4.61225 4.84967 4.95374 4.99136 5.12285 5.55718 5.58679 5.72760 5.73304 5.93246 6.01117 6.08272 6.13950 6.21742 6.31611 6.37270 6.49742 6.68334 6.78391 6.93876 7.00566 7.13471 7.34493 7.73644 7.89730 8.45432 9.55966 10.15747 10.49621 11.48677 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.002552 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.273739 B =10969.868383 C =11124.201882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.076 0.924 16 C 0.124 3.876 17 N -0.703 5.703 18 C 0.600 3.400 19 O -0.525 6.525 20 C -0.020 4.020 21 C -0.236 4.236 22 S 0.459 5.541 23 N -0.289 5.289 24 N -0.210 5.210 25 C -0.121 4.121 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.209 0.791 36 H 0.073 0.927 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -24.766 -6.512 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.095 0.905 16 C 0.002 3.998 17 N -0.353 5.353 18 C 0.380 3.620 19 O -0.401 6.401 20 C -0.168 4.168 21 C -0.393 4.393 22 S 0.595 5.405 23 N -0.270 5.270 24 N -0.081 5.081 25 C -0.160 4.160 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.226 0.774 36 H 0.092 0.908 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.472 -25.371 -7.306 26.779 hybrid contribution -0.016 1.817 0.774 1.975 sum -4.489 -23.554 -6.532 24.852 Atomic orbital electron populations 1.69656 1.05083 1.25595 1.57816 1.24736 0.95494 0.97649 1.03171 0.86215 0.78655 0.84009 0.77468 1.21809 1.21835 1.20808 1.19261 0.91005 0.84230 1.42425 0.91230 1.42549 1.05662 0.99715 1.88275 1.20801 0.94128 0.86050 0.92629 0.93351 1.23118 0.96061 0.98631 1.00857 1.22511 1.00011 0.97438 0.95182 1.22250 0.94423 0.97909 0.97706 0.90520 1.21679 0.98148 0.88254 0.91743 1.45908 1.13282 1.35024 1.41130 1.16643 0.83723 0.80295 0.81311 1.90863 1.37877 1.66188 1.45128 1.22765 0.90056 1.02415 1.01525 1.28910 1.05152 1.00781 1.04443 1.81561 1.07039 1.29037 1.22908 1.78662 1.14146 1.12622 1.21543 1.71532 1.27448 1.06468 1.02636 1.22466 1.01508 0.95377 0.96614 0.93553 0.78267 0.90968 0.93275 0.92801 0.91285 0.90428 0.91084 0.75422 0.77363 0.90841 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.58 9.96 -15.05 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.83 5.08 -52.34 -0.27 -18.10 16 10 C 0.17 3.38 3.55 -66.81 -0.24 3.14 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.15 -2.53 6.54 -25.07 -0.16 -2.69 16 13 C -0.11 -1.67 6.19 -24.74 -0.15 -1.82 16 14 C -0.10 -1.35 2.89 -88.96 -0.26 -1.61 16 15 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.12 1.60 4.96 -4.04 -0.02 1.58 16 17 N -0.70 -8.34 5.44 -61.37 -0.33 -8.68 16 18 C 0.60 7.71 7.81 -12.51 -0.10 7.62 16 19 O -0.53 -8.20 16.80 5.27 0.09 -8.11 16 20 C -0.02 -0.22 6.87 -83.78 -0.58 -0.79 16 21 C -0.24 -1.78 11.21 30.64 0.34 -1.44 16 22 S 0.46 2.66 23.38 -107.50 -2.51 0.14 16 23 N -0.29 -2.84 12.49 60.35 0.75 -2.08 16 24 N -0.21 -2.33 11.24 32.74 0.37 -1.96 16 25 C -0.12 -1.90 6.14 -25.61 -0.16 -2.05 16 26 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.38 10.11 7.52 -40.82 -0.31 9.80 16 28 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 32 H 0.08 1.13 8.02 -51.93 -0.42 0.72 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.41 4.33 8.02 -40.82 -0.33 4.00 16 35 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -32.79 329.83 -7.56 -40.35 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.76 Total: 8.87 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.56 Total: -5.31 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 1.25 Total: -58.37 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.51 Total: 0.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.79 -7.56 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086769229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.685 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds