Wall clock time and date at job start Tue Mar 31 2020 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48507 * 109.46816 * 270.00047 * 3 2 1 5 5 H 1.48496 * 109.47253 * 29.99794 * 3 2 1 6 6 H 1.48496 * 109.47497 * 150.00303 * 3 2 1 7 7 C 1.38814 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01780 * 33.60688 * 10 9 7 12 12 C 1.54268 * 110.03403 * 272.16371 * 10 9 7 13 13 C 1.54887 * 104.19666 * 264.32820 * 12 10 9 14 14 C 1.54894 * 102.74550 * 322.05328 * 13 12 10 15 15 H 1.08991 * 110.60090 * 279.20560 * 14 13 12 16 16 C 1.53005 * 110.48344 * 156.62001 * 14 13 12 17 17 N 1.46505 * 109.46904 * 70.22741 * 16 14 13 18 18 C 1.34777 * 119.99724 * 180.02562 * 17 16 14 19 19 O 1.21603 * 120.00258 * 359.97438 * 18 17 16 20 20 C 1.47445 * 119.99414 * 179.72682 * 18 17 16 21 21 C 1.37985 * 124.14999 * 180.27464 * 20 18 17 22 22 S 1.72103 * 104.03214 * 179.97438 * 21 20 18 23 23 N 1.56401 * 96.15513 * 359.97438 * 22 21 20 24 24 N 1.27414 * 109.87651 * 359.75198 * 23 22 21 25 25 C 1.53877 * 110.03212 * 154.99804 * 10 9 7 26 26 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99395 * 359.97438 * 9 7 2 28 28 H 1.09004 * 110.48088 * 23.00744 * 12 10 9 29 29 H 1.09003 * 110.48519 * 145.51612 * 12 10 9 30 30 H 1.08999 * 110.75114 * 203.74290 * 13 12 10 31 31 H 1.08990 * 110.75473 * 80.37037 * 13 12 10 32 32 H 1.09003 * 109.47270 * 310.23301 * 16 14 13 33 33 H 1.08993 * 109.47355 * 190.22844 * 16 14 13 34 34 H 0.97000 * 119.99792 * 359.97438 * 17 16 14 35 35 H 1.07995 * 127.98669 * 359.97438 * 21 20 18 36 36 H 1.09000 * 110.03023 * 359.97438 * 25 10 9 37 37 H 1.09000 * 110.03119 * 238.57427 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5534 0.5674 12 6 2.3697 -4.0871 -1.4478 13 6 1.2214 -5.0614 -1.8100 14 6 0.9997 -5.8354 -0.4867 15 1 1.7391 -6.6287 -0.3780 16 6 -0.4159 -6.4138 -0.4355 17 7 -0.5328 -7.5052 -1.4058 18 6 -1.6993 -8.1675 -1.5377 19 8 -2.6544 -7.8595 -0.8510 20 6 -1.8187 -9.2619 -2.5185 21 6 -2.9707 -9.9919 -2.7282 22 16 -2.5371 -11.1105 -3.9621 23 7 -1.0590 -10.6237 -4.1180 24 7 -0.8326 -9.6619 -3.3135 25 6 1.1869 -4.7684 0.6116 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.3611 -3.2233 -2.1125 29 1 3.3330 -4.5949 -1.4959 30 1 1.5268 -5.7389 -2.6073 31 1 0.3231 -4.5120 -2.0914 32 1 -1.1365 -5.6329 -0.6785 33 1 -0.6167 -6.7948 0.5658 34 1 0.2290 -7.7506 -1.9538 35 1 -3.9242 -9.8858 -2.2324 36 1 0.2193 -4.3638 0.9085 37 1 1.6898 -5.2050 1.4745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086769229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:00 Heat of formation + Delta-G solvation = 12.109456 kcal Electronic energy + Delta-G solvation = -20776.555147 eV Core-core repulsion = 17487.254857 eV Total energy + Delta-G solvation = -3289.300290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.15320 -40.53351 -39.40587 -36.36690 -35.00370 -33.29353 -32.45090 -30.38287 -28.96843 -28.07364 -26.18408 -25.12957 -23.92163 -21.94940 -21.23666 -20.81647 -20.05975 -19.10524 -17.97446 -17.25501 -17.15065 -16.80490 -16.53571 -16.25422 -15.89658 -15.63633 -15.13974 -14.93670 -14.47033 -14.21236 -13.67967 -13.54638 -13.14910 -13.06247 -12.95626 -12.48039 -12.36725 -12.14902 -12.00550 -11.73896 -11.64685 -11.49875 -11.48445 -11.38022 -11.25018 -11.18035 -10.90740 -10.88716 -10.19902 -8.95200 -7.92317 -5.19534 -0.94429 -0.05514 0.30201 0.53265 1.46803 1.48275 1.56647 1.97289 2.02756 2.57530 2.73387 3.39531 3.61841 3.66446 3.77310 3.83292 3.90492 4.20773 4.35228 4.42611 4.54335 4.59844 4.69326 4.79477 4.84844 4.92715 5.08544 5.14326 5.23021 5.24579 5.45190 5.51232 5.58685 5.66741 6.20654 6.31455 6.53522 6.96236 7.36058 8.16434 8.37242 9.31443 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.002552 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.273739 B =10969.868383 C =11124.201882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.734 5.734 10 C 0.162 3.838 11 H 0.045 0.955 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.085 4.085 15 H 0.108 0.892 16 C 0.131 3.869 17 N -0.696 5.696 18 C 0.599 3.401 19 O -0.561 6.561 20 C -0.045 4.045 21 C -0.239 4.239 22 S 0.566 5.434 23 N -0.331 5.331 24 N -0.232 5.232 25 C -0.115 4.115 26 H 0.249 0.751 27 H 0.371 0.629 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.418 0.582 35 H 0.227 0.773 36 H 0.054 0.946 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -27.213 -7.170 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.054 3.946 11 H 0.063 0.937 12 C -0.180 4.180 13 C -0.145 4.145 14 C -0.104 4.104 15 H 0.126 0.874 16 C 0.008 3.992 17 N -0.346 5.346 18 C 0.381 3.619 19 O -0.439 6.439 20 C -0.193 4.193 21 C -0.395 4.395 22 S 0.701 5.299 23 N -0.312 5.312 24 N -0.101 5.101 25 C -0.154 4.154 26 H 0.058 0.942 27 H 0.203 0.797 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.256 0.744 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.711 -27.866 -7.982 29.224 hybrid contribution -0.280 2.402 0.913 2.585 sum -3.990 -25.464 -7.069 26.727 Atomic orbital electron populations 1.69819 1.06599 1.25843 1.60027 1.25535 0.96339 1.01022 1.04285 0.85180 0.77765 0.79803 0.77295 1.21669 1.22392 1.19368 1.19650 0.91406 0.85429 1.40236 0.90727 1.42766 1.05264 1.00994 1.88393 1.21131 0.94141 0.85099 0.94273 0.93691 1.22961 0.98489 0.98219 0.98293 1.22445 0.97899 0.97234 0.96945 1.22119 0.95284 0.97604 0.95396 0.87370 1.21474 0.97392 0.88051 0.92263 1.45804 1.13564 1.34433 1.40842 1.16919 0.83229 0.80502 0.81207 1.90836 1.38915 1.67451 1.46697 1.22514 0.91510 1.03024 1.02251 1.29291 1.05082 1.00452 1.04698 1.81182 1.03387 1.25647 1.19677 1.78316 1.17471 1.13132 1.22282 1.71562 1.28123 1.07275 1.03168 1.22365 0.99979 0.94932 0.98097 0.94207 0.79741 0.94356 0.90487 0.90047 0.93837 0.92784 0.90654 0.74444 0.75593 0.92736 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -13.18 9.96 84.03 0.84 -12.34 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.73 -37.18 5.08 -319.52 -1.62 -38.80 16 10 C 0.16 6.22 3.55 45.72 0.16 6.38 16 11 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 12 C -0.14 -4.70 6.54 31.67 0.21 -4.49 16 13 C -0.11 -3.03 6.19 31.89 0.20 -2.84 16 14 C -0.09 -2.07 2.89 -9.72 -0.03 -2.10 16 15 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 16 C 0.13 3.31 4.96 86.38 0.43 3.74 16 17 N -0.70 -15.89 5.44 -466.34 -2.54 -18.43 16 18 C 0.60 15.16 7.81 86.67 0.68 15.84 16 19 O -0.56 -17.60 16.80 -4.04 -0.07 -17.66 16 20 C -0.05 -0.92 6.87 41.36 0.28 -0.63 16 21 C -0.24 -3.10 11.21 67.76 0.76 -2.34 16 22 S 0.57 4.90 23.38 -56.49 -1.32 3.58 16 23 N -0.33 -5.87 12.49 37.02 0.46 -5.40 16 24 N -0.23 -4.84 11.24 -50.34 -0.57 -5.41 16 25 C -0.11 -3.50 6.14 31.32 0.19 -3.31 16 26 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.37 20.37 7.52 -92.71 -0.70 19.67 16 28 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.45 7.96 -2.39 -0.02 1.43 16 32 H 0.05 1.63 8.02 -2.39 -0.02 1.61 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.42 8.15 8.02 -92.71 -0.74 7.41 16 35 H 0.23 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.05 1.89 7.31 -2.39 -0.02 1.87 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -73.19 329.83 0.51 -72.68 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.33 Total: 27.17 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 4.18 Total: -6.29 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -3.98 Total: -128.43 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.07 Total: -17.66 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.32 Total: 3.58 kcal Total: -73.19 0.51 -72.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086769229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.786 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds