Wall clock time and date at job start Tue Mar 31 2020 05:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31242 * 124.04827 * 2 1 4 4 N 1.27332 * 120.03362 * 179.80857 * 3 2 1 5 5 S 1.56647 * 109.74320 * 0.45203 * 4 3 2 6 6 C 1.38239 * 124.05790 * 180.30332 * 2 1 3 7 7 C 1.47171 * 128.47739 * 359.96031 * 6 2 1 8 8 O 1.21629 * 119.99575 * 359.97438 * 7 6 2 9 9 N 1.34772 * 120.00229 * 179.97438 * 7 6 2 10 10 C 1.46503 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.64016 * 323.31288 * 10 9 7 12 12 C 1.55158 * 110.72013 * 86.45373 * 10 9 7 13 13 C 1.54905 * 101.58229 * 153.86270 * 12 10 9 14 14 N 1.47430 * 104.83538 * 322.99396 * 13 12 10 15 15 C 1.36930 * 125.65202 * 204.16190 * 14 13 12 16 16 H 1.07994 * 120.00300 * 169.82113 * 15 14 13 17 17 C 1.38823 * 119.99878 * 349.82899 * 15 14 13 18 18 N 1.31618 * 119.99595 * 350.47627 * 17 15 14 19 19 Si 1.86793 * 119.99907 * 170.47996 * 17 15 14 20 20 H 1.48500 * 109.47278 * 94.13414 * 19 17 15 21 21 H 1.48504 * 109.46694 * 214.13188 * 19 17 15 22 22 H 1.48501 * 109.47352 * 334.13063 * 19 17 15 23 23 C 1.47023 * 108.69757 * 24.12494 * 14 13 12 24 24 H 1.09008 * 109.87968 * 239.52158 * 23 14 13 25 25 C 1.52998 * 109.88109 * 118.36490 * 23 14 13 26 26 H 1.09009 * 109.46857 * 269.69779 * 1 2 3 27 27 H 1.08996 * 109.47667 * 29.69430 * 1 2 3 28 28 H 1.09003 * 109.47131 * 149.70297 * 1 2 3 29 29 H 0.96997 * 119.99837 * 0.02562 * 9 7 6 30 30 H 1.08991 * 111.00579 * 271.93978 * 12 10 9 31 31 H 1.09006 * 111.00427 * 35.75257 * 12 10 9 32 32 H 1.09010 * 110.36798 * 81.82759 * 13 12 10 33 33 H 1.08997 * 110.36966 * 204.15089 * 13 12 10 34 34 H 0.97001 * 119.99859 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47044 * 302.18343 * 25 23 14 36 36 H 1.09004 * 109.47548 * 62.18584 * 25 23 14 37 37 H 1.09002 * 109.47433 * 182.18877 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2418 1.0874 0.0000 4 7 3.5120 0.9983 0.0037 5 16 3.9367 -0.5095 -0.0040 6 6 2.2812 -1.1453 -0.0061 7 6 1.8395 -2.5491 -0.0127 8 8 0.6522 -2.8130 -0.0128 9 7 2.7506 -3.5422 -0.0186 10 6 2.3109 -4.9397 -0.0247 11 1 1.4161 -5.0636 0.5854 12 6 2.0586 -5.4295 -1.4751 13 6 2.2910 -6.9544 -1.3332 14 7 3.4027 -7.0791 -0.3730 15 6 4.2578 -8.1442 -0.2758 16 1 5.1388 -8.0745 0.3450 17 6 3.9924 -9.3134 -0.9755 18 7 2.8335 -9.4702 -1.5794 19 14 5.2799 -10.6641 -1.0598 20 1 5.0323 -11.6522 0.0208 21 1 5.2001 -11.3423 -2.3785 22 1 6.6309 -10.0716 -0.8888 23 6 3.4417 -5.8700 0.4625 24 1 4.4052 -5.3727 0.3502 25 6 3.2132 -6.2430 1.9287 26 1 -0.3633 -0.0054 1.0278 27 1 -0.3634 0.8926 -0.5090 28 1 -0.3633 -0.8873 -0.5185 29 1 3.6975 -3.3317 -0.0181 30 1 1.0359 -5.2175 -1.7867 31 1 2.7753 -4.9872 -2.1671 32 1 1.3964 -7.4399 -0.9429 33 1 2.5696 -7.3868 -2.2942 34 1 2.6479 -10.2874 -2.0680 35 1 2.2570 -6.7566 2.0281 36 1 4.0152 -6.8998 2.2657 37 1 3.2047 -5.3384 2.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088464708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:05 Heat of formation + Delta-G solvation = 60.306797 kcal Electronic energy + Delta-G solvation = -21563.732021 eV Core-core repulsion = 18276.521725 eV Total energy + Delta-G solvation = -3287.210297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18964 -39.75348 -37.67556 -34.26729 -33.48760 -32.15208 -30.49762 -29.33918 -28.15123 -27.16095 -24.94917 -24.06843 -22.56927 -20.70852 -20.36914 -19.68651 -18.71579 -17.40039 -16.84400 -16.32231 -16.05589 -14.89573 -14.72398 -14.55450 -14.23526 -14.04839 -13.53619 -13.28458 -13.21634 -12.90854 -12.64517 -12.20866 -12.16794 -11.77948 -11.65387 -11.19462 -11.01203 -10.83247 -10.69273 -10.58113 -10.50615 -10.13329 -10.08642 -10.03551 -9.96257 -9.92357 -9.70153 -8.90383 -8.64512 -6.91443 -5.81193 -3.15135 -0.50345 0.56922 1.21887 1.70833 2.86849 2.92651 3.35371 3.41570 3.43172 3.64661 4.33178 4.42452 4.56646 5.05470 5.15930 5.35050 5.37621 5.39315 5.49263 5.49810 5.69126 5.91594 6.02588 6.07767 6.19534 6.24683 6.37565 6.48841 6.58363 6.77955 6.98875 7.31257 7.41968 7.43941 7.52599 7.71689 7.99973 8.18011 9.11265 9.73189 10.39010 11.31449 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.003501 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.493156 B = 7996.680117 C = 8396.064374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.099 3.901 3 N -0.251 5.251 4 N -0.256 5.256 5 S 0.415 5.585 6 C -0.287 4.287 7 C 0.600 3.400 8 O -0.514 6.514 9 N -0.705 5.705 10 C 0.136 3.864 11 H 0.098 0.902 12 C -0.155 4.155 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.155 3.845 24 H 0.037 0.963 25 C -0.156 4.156 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 16.588 3.080 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 N -0.118 5.118 4 N -0.237 5.237 5 S 0.551 5.449 6 C -0.427 4.427 7 C 0.383 3.617 8 O -0.390 6.390 9 N -0.355 5.355 10 C 0.032 3.968 11 H 0.116 0.884 12 C -0.195 4.195 13 C 0.049 3.951 14 N -0.319 5.319 15 C -0.358 4.358 16 H 0.094 0.906 17 C -0.201 4.201 18 N -0.562 5.562 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.047 3.953 24 H 0.054 0.946 25 C -0.215 4.215 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.322 17.279 2.984 17.538 hybrid contribution -0.094 -1.229 0.006 1.233 sum 0.228 16.050 2.990 16.328 Atomic orbital electron populations 1.20541 0.83699 1.05057 1.04408 1.22968 1.00262 0.85018 0.96578 1.70620 0.96952 1.28039 1.16180 1.78862 1.09458 1.15737 1.19616 1.82622 1.09960 1.01417 1.50873 1.27877 0.97952 1.00277 1.16638 1.16404 0.86160 0.81743 0.77411 1.90817 1.15693 1.82883 1.49639 1.45998 1.08999 1.06688 1.73821 1.22272 0.98560 0.77306 0.98624 0.88360 1.23423 1.00888 1.00380 0.94779 1.21424 0.90554 0.87876 0.95282 1.44482 1.35214 1.16342 1.35827 1.18950 1.00892 0.90314 1.25635 0.90564 1.24827 0.96912 0.97369 1.01012 1.69949 1.20991 1.26821 1.38430 0.86143 0.80793 0.81865 0.77158 1.21595 1.21609 1.20587 1.21011 0.94306 0.88964 0.91012 0.94590 1.22248 1.02356 0.99799 0.97115 0.89315 0.89942 0.87871 0.76863 0.91529 0.91897 0.95140 0.90905 0.93603 0.92737 0.92488 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.90 36.01 0.36 -0.38 16 2 C 0.10 1.15 7.00 -82.84 -0.58 0.57 16 3 N -0.25 -3.14 11.54 33.42 0.39 -2.76 16 4 N -0.26 -3.04 12.51 60.35 0.75 -2.29 16 5 S 0.42 3.91 23.05 -107.50 -2.48 1.43 16 6 C -0.29 -3.32 6.80 -35.96 -0.24 -3.56 16 7 C 0.60 8.14 7.80 -12.64 -0.10 8.04 16 8 O -0.51 -8.30 14.62 5.25 0.08 -8.22 16 9 N -0.70 -9.33 5.20 -53.18 -0.28 -9.60 16 10 C 0.14 2.25 2.76 -66.10 -0.18 2.07 16 11 H 0.10 1.72 7.41 -51.93 -0.38 1.34 16 12 C -0.16 -2.81 6.77 -24.58 -0.17 -2.97 16 13 C 0.17 3.98 5.42 -2.53 -0.01 3.97 16 14 N -0.59 -13.99 3.13 -162.57 -0.51 -14.49 16 15 C -0.23 -6.01 9.85 -15.06 -0.15 -6.15 16 16 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 17 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 18 N -0.92 -25.86 10.69 55.49 0.59 -25.26 16 19 Si 0.91 21.23 29.56 -169.99 -5.03 16.21 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.16 2.88 3.48 -66.96 -0.23 2.65 16 24 H 0.04 0.64 7.69 -51.92 -0.40 0.24 16 25 C -0.16 -2.72 9.14 37.16 0.34 -2.39 16 26 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 1.09 6.47 -51.93 -0.34 0.76 16 29 H 0.40 4.33 7.74 -40.82 -0.32 4.01 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.76 8.07 -51.92 -0.42 0.35 16 33 H 0.07 1.86 6.94 -51.93 -0.36 1.50 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -30.21 323.29 -7.39 -37.59 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.72 Total: 0.89 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.06 Total: 1.63 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.95 Total: -54.41 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.48 Total: 1.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.21 -7.39 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088464708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.899 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds