Wall clock time and date at job start Tue Mar 31 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31242 * 124.04827 * 2 1 4 4 N 1.27332 * 120.03362 * 179.80857 * 3 2 1 5 5 S 1.56647 * 109.74320 * 0.45203 * 4 3 2 6 6 C 1.38239 * 124.05790 * 180.30332 * 2 1 3 7 7 C 1.47171 * 128.47739 * 359.96031 * 6 2 1 8 8 O 1.21629 * 119.99575 * 359.97438 * 7 6 2 9 9 N 1.34772 * 120.00229 * 179.97438 * 7 6 2 10 10 C 1.46503 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.64016 * 323.31288 * 10 9 7 12 12 C 1.55158 * 110.72013 * 86.45373 * 10 9 7 13 13 C 1.54905 * 101.58229 * 153.86270 * 12 10 9 14 14 N 1.47430 * 104.83538 * 322.99396 * 13 12 10 15 15 C 1.36930 * 125.65202 * 204.16190 * 14 13 12 16 16 H 1.07994 * 120.00300 * 169.82113 * 15 14 13 17 17 C 1.38823 * 119.99878 * 349.82899 * 15 14 13 18 18 N 1.31618 * 119.99595 * 350.47627 * 17 15 14 19 19 Si 1.86793 * 119.99907 * 170.47996 * 17 15 14 20 20 H 1.48500 * 109.47278 * 94.13414 * 19 17 15 21 21 H 1.48504 * 109.46694 * 214.13188 * 19 17 15 22 22 H 1.48501 * 109.47352 * 334.13063 * 19 17 15 23 23 C 1.47023 * 108.69757 * 24.12494 * 14 13 12 24 24 H 1.09008 * 109.87968 * 239.52158 * 23 14 13 25 25 C 1.52998 * 109.88109 * 118.36490 * 23 14 13 26 26 H 1.09009 * 109.46857 * 269.69779 * 1 2 3 27 27 H 1.08996 * 109.47667 * 29.69430 * 1 2 3 28 28 H 1.09003 * 109.47131 * 149.70297 * 1 2 3 29 29 H 0.96997 * 119.99837 * 0.02562 * 9 7 6 30 30 H 1.08991 * 111.00579 * 271.93978 * 12 10 9 31 31 H 1.09006 * 111.00427 * 35.75257 * 12 10 9 32 32 H 1.09010 * 110.36798 * 81.82759 * 13 12 10 33 33 H 1.08997 * 110.36966 * 204.15089 * 13 12 10 34 34 H 0.97001 * 119.99859 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47044 * 302.18343 * 25 23 14 36 36 H 1.09004 * 109.47548 * 62.18584 * 25 23 14 37 37 H 1.09002 * 109.47433 * 182.18877 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2418 1.0874 0.0000 4 7 3.5120 0.9983 0.0037 5 16 3.9367 -0.5095 -0.0040 6 6 2.2812 -1.1453 -0.0061 7 6 1.8395 -2.5491 -0.0127 8 8 0.6522 -2.8130 -0.0128 9 7 2.7506 -3.5422 -0.0186 10 6 2.3109 -4.9397 -0.0247 11 1 1.4161 -5.0636 0.5854 12 6 2.0586 -5.4295 -1.4751 13 6 2.2910 -6.9544 -1.3332 14 7 3.4027 -7.0791 -0.3730 15 6 4.2578 -8.1442 -0.2758 16 1 5.1388 -8.0745 0.3450 17 6 3.9924 -9.3134 -0.9755 18 7 2.8335 -9.4702 -1.5794 19 14 5.2799 -10.6641 -1.0598 20 1 5.0323 -11.6522 0.0208 21 1 5.2001 -11.3423 -2.3785 22 1 6.6309 -10.0716 -0.8888 23 6 3.4417 -5.8700 0.4625 24 1 4.4052 -5.3727 0.3502 25 6 3.2132 -6.2430 1.9287 26 1 -0.3633 -0.0054 1.0278 27 1 -0.3634 0.8926 -0.5090 28 1 -0.3633 -0.8873 -0.5185 29 1 3.6975 -3.3317 -0.0181 30 1 1.0359 -5.2175 -1.7867 31 1 2.7753 -4.9872 -2.1671 32 1 1.3964 -7.4399 -0.9429 33 1 2.5696 -7.3868 -2.2942 34 1 2.6479 -10.2874 -2.0680 35 1 2.2570 -6.7566 2.0281 36 1 4.0152 -6.8998 2.2657 37 1 3.2047 -5.3384 2.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088464708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:02 Heat of formation + Delta-G solvation = 39.763671 kcal Electronic energy + Delta-G solvation = -21564.622838 eV Core-core repulsion = 18276.521725 eV Total energy + Delta-G solvation = -3288.101113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.07919 -40.95088 -39.16177 -35.70646 -34.37029 -33.87363 -32.05957 -30.82659 -29.34770 -28.01953 -26.46877 -25.81802 -23.66009 -22.12158 -21.71648 -21.09976 -19.57558 -18.65586 -18.48370 -17.44054 -17.18022 -16.61151 -15.91181 -15.88460 -15.66964 -15.23536 -15.03796 -14.37458 -14.10176 -13.98065 -13.94355 -13.81741 -13.47996 -13.18673 -12.88233 -12.79985 -12.57439 -12.55068 -12.26473 -12.10139 -11.92620 -11.60067 -11.51625 -11.46908 -11.13134 -10.95075 -10.78336 -10.65750 -10.14346 -8.84557 -7.83629 -5.18236 -1.38027 -0.25860 0.38717 0.81734 1.50186 1.50709 1.59872 1.80134 1.83579 2.53462 2.80224 3.36996 3.44902 3.51485 3.72774 3.81845 3.92690 4.21415 4.26006 4.52732 4.61461 4.64113 4.69224 4.78414 4.84415 4.93644 5.04532 5.11250 5.21736 5.36441 5.51911 5.56299 5.61622 5.74634 6.23647 6.28363 6.55618 6.94667 7.11126 7.79667 8.45001 9.28304 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.003501 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.493156 B = 7996.680117 C = 8396.064374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.099 3.901 3 N -0.273 5.273 4 N -0.281 5.281 5 S 0.500 5.500 6 C -0.311 4.311 7 C 0.607 3.393 8 O -0.541 6.541 9 N -0.696 5.696 10 C 0.155 3.845 11 H 0.090 0.910 12 C -0.140 4.140 13 C 0.180 3.820 14 N -0.612 5.612 15 C -0.231 4.231 16 H 0.085 0.915 17 C -0.063 4.063 18 N -0.949 5.949 19 Si 0.972 3.028 20 H -0.290 1.290 21 H -0.298 1.298 22 H -0.266 1.266 23 C 0.150 3.850 24 H 0.058 0.942 25 C -0.148 4.148 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.411 0.589 30 H 0.072 0.928 31 H 0.074 0.926 32 H -0.002 1.002 33 H 0.038 0.962 34 H 0.246 0.754 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 18.384 3.901 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 N -0.138 5.138 4 N -0.262 5.262 5 S 0.636 5.364 6 C -0.451 4.451 7 C 0.391 3.609 8 O -0.419 6.419 9 N -0.347 5.347 10 C 0.050 3.950 11 H 0.108 0.892 12 C -0.179 4.179 13 C 0.055 3.945 14 N -0.338 5.338 15 C -0.360 4.360 16 H 0.102 0.898 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.801 3.199 20 H -0.218 1.218 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.043 3.957 24 H 0.076 0.924 25 C -0.207 4.207 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.248 0.752 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.016 0.984 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.903 19.134 3.832 19.606 hybrid contribution -0.514 -1.726 -0.215 1.813 sum 1.390 17.408 3.617 17.834 Atomic orbital electron populations 1.20588 0.82785 1.05207 1.05076 1.23249 1.01067 0.84877 0.95672 1.70693 0.97134 1.28508 1.17475 1.78640 1.09594 1.17850 1.20117 1.82287 1.07199 0.99005 1.47874 1.27652 0.99894 0.99112 1.18474 1.16507 0.85624 0.82333 0.76408 1.90813 1.16947 1.83496 1.50677 1.45719 1.09840 1.05179 1.73985 1.21823 0.97559 0.78718 0.96904 0.89169 1.23226 1.01616 0.96694 0.96395 1.21142 0.89187 0.90811 0.93391 1.44718 1.34754 1.17189 1.37134 1.19328 1.01272 0.90871 1.24507 0.89763 1.25596 0.98661 0.99781 1.01622 1.70148 1.22813 1.27005 1.39792 0.85162 0.79219 0.79176 0.76339 1.21770 1.22471 1.19061 1.21231 0.95964 0.87561 0.90936 0.92424 1.22142 1.00831 1.01017 0.96738 0.88320 0.88439 0.89000 0.75175 0.90905 0.90723 0.98443 0.94336 0.94463 0.94668 0.93475 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.90 71.24 0.70 -0.64 16 2 C 0.10 2.12 7.00 42.65 0.30 2.42 16 3 N -0.27 -6.29 11.54 -48.18 -0.56 -6.85 16 4 N -0.28 -6.00 12.51 37.02 0.46 -5.54 16 5 S 0.50 7.79 23.05 -56.49 -1.30 6.49 16 6 C -0.31 -6.43 6.80 24.62 0.17 -6.26 16 7 C 0.61 15.10 7.80 86.59 0.68 15.77 16 8 O -0.54 -16.70 14.62 -4.12 -0.06 -16.76 16 9 N -0.70 -16.45 5.20 -440.43 -2.29 -18.74 16 10 C 0.16 4.85 2.76 46.18 0.13 4.98 16 11 H 0.09 3.05 7.41 -2.39 -0.02 3.03 16 12 C -0.14 -4.96 6.77 31.98 0.22 -4.74 16 13 C 0.18 8.48 5.42 86.85 0.47 8.95 16 14 N -0.61 -28.83 3.13 -668.25 -2.09 -30.91 16 15 C -0.23 -12.03 9.85 84.04 0.83 -11.21 16 16 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 17 C -0.06 -3.44 5.40 84.86 0.46 -2.99 16 18 N -0.95 -55.45 10.69 21.65 0.23 -55.22 16 19 Si 0.97 44.03 29.56 68.60 2.03 46.06 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 C 0.15 5.29 3.48 45.34 0.16 5.44 16 24 H 0.06 1.84 7.69 -2.38 -0.02 1.82 16 25 C -0.15 -4.90 9.14 71.98 0.66 -4.25 16 26 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.86 6.47 -2.39 -0.02 1.84 16 29 H 0.41 7.40 7.74 -92.71 -0.72 6.68 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.00 -0.13 8.07 -2.38 -0.02 -0.15 16 33 H 0.04 2.05 6.94 -2.39 -0.02 2.03 16 34 H 0.25 14.11 8.31 -92.71 -0.77 13.33 16 35 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.05 1.64 8.04 -2.39 -0.02 1.62 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -66.28 323.29 1.57 -64.71 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.39 Total: 9.28 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.76 Total: 7.48 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -4.24 Total: -117.25 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.06 Total: -16.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 7.79 SS G_CDS: -1.30 Total: 6.49 kcal Total: -66.28 1.57 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088464708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.469 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds