Wall clock time and date at job start Tue Mar 31 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 14 14 N 1.46504 * 109.45065 * 181.25215 * 12 11 10 15 15 C 1.34770 * 119.99766 * 84.94197 * 14 12 11 16 16 O 1.21705 * 120.00412 * 359.97438 * 15 14 12 17 17 C 1.46582 * 120.00049 * 180.02562 * 15 14 12 18 18 C 1.36649 * 125.46061 * 179.97438 * 17 15 14 19 19 C 1.37465 * 113.30108 * 179.97438 * 18 17 15 20 20 C 1.33824 * 115.09773 * 359.97438 * 19 18 17 21 21 S 1.70611 * 110.95588 * 359.72841 * 20 19 18 22 22 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 23 23 H 1.08999 * 109.49861 * 58.58399 * 22 12 11 24 24 O 1.42899 * 109.52272 * 178.66839 * 22 12 11 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 31 31 H 0.97004 * 120.00075 * 264.94533 * 14 12 11 32 32 H 1.08001 * 123.35096 * 0.02562 * 18 17 15 33 33 H 1.08003 * 122.45390 * 179.97438 * 19 18 17 34 34 H 1.08006 * 124.52028 * 179.97438 * 20 19 18 35 35 H 0.96700 * 114.00229 * 179.85787 * 24 22 12 36 36 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 37 37 H 1.08995 * 109.58430 * 6.43945 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0381 1.2488 14 7 1.0410 -5.6289 2.9574 15 6 -0.0041 -6.2500 3.5390 16 8 -1.1360 -6.0313 3.1487 17 6 0.2222 -7.1880 4.6424 18 6 -0.7514 -7.8760 5.3103 19 6 -0.2588 -8.6894 6.3030 20 6 1.0718 -8.6702 6.4445 21 16 1.7906 -7.6154 5.3124 22 6 2.0734 -4.6099 0.9881 23 1 2.9048 -4.2393 1.5876 24 8 2.3906 -5.9089 0.4841 25 6 1.8216 -3.6548 -0.1828 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3293 1.6671 28 1 -0.6750 -2.6418 0.7418 29 1 -0.3892 -3.3692 3.0579 30 1 1.3401 -2.9478 3.0078 31 1 1.9431 -5.8029 3.2688 32 1 -1.8032 -7.7899 5.0806 33 1 -0.8988 -9.2993 6.9234 34 1 1.6181 -9.2485 7.1750 35 1 3.1780 -5.9317 -0.0768 36 1 1.0518 -4.0695 -0.8336 37 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090042749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:12 Heat of formation + Delta-G solvation = -28.908523 kcal Electronic energy + Delta-G solvation = -21669.306859 eV Core-core repulsion = 18345.935145 eV Total energy + Delta-G solvation = -3323.371714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.84253 -38.26239 -37.31292 -35.42687 -34.32967 -32.04464 -30.51345 -29.52356 -28.48411 -25.66144 -24.55516 -22.52663 -22.08550 -20.88881 -19.83728 -19.23348 -18.41144 -17.09735 -16.60499 -16.15476 -15.75041 -15.30578 -14.83873 -14.73624 -14.00005 -13.88005 -13.55095 -13.28306 -13.06902 -12.92902 -12.74842 -12.42963 -12.29722 -12.06036 -11.59055 -11.16882 -11.11211 -10.89436 -10.69349 -10.35698 -10.26270 -10.00602 -9.91554 -9.75073 -9.48659 -9.08612 -8.81391 -8.73566 -8.46391 -6.78915 -5.85693 -3.30103 0.38590 1.30734 1.70922 2.28235 3.28273 3.32155 3.35010 3.41043 3.42608 4.35357 4.50060 4.73972 4.90114 5.13566 5.27228 5.29936 5.31204 5.46528 5.53039 5.74748 5.77498 5.94023 5.99978 6.09833 6.14564 6.28222 6.46526 6.50341 6.65760 6.76054 6.82190 7.28029 7.59086 7.65459 7.72095 7.90467 8.33462 8.36622 9.12086 9.74475 10.30184 11.22929 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.003566 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.148787 B = 7849.849960 C = 8060.276219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.710 5.710 15 C 0.586 3.414 16 O -0.529 6.529 17 C -0.254 4.254 18 C -0.064 4.064 19 C -0.148 4.148 20 C -0.238 4.238 21 S 0.199 5.801 22 C 0.079 3.921 23 H 0.057 0.943 24 O -0.571 6.571 25 C 0.121 3.879 26 H 0.256 0.744 27 H 0.094 0.906 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.393 0.607 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.374 0.626 36 H 0.030 0.970 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -16.043 11.352 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.109 0.891 14 N -0.359 5.359 15 C 0.371 3.629 16 O -0.408 6.408 17 C -0.375 4.375 18 C -0.097 4.097 19 C -0.180 4.180 20 C -0.375 4.375 21 S 0.466 5.534 22 C 0.018 3.982 23 H 0.075 0.925 24 O -0.375 6.375 25 C -0.006 4.006 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.221 0.779 36 H 0.048 0.952 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.009 -15.462 11.056 19.657 hybrid contribution -0.103 0.374 0.334 0.512 sum 4.906 -15.088 11.390 19.530 Atomic orbital electron populations 1.70033 1.05294 1.25774 1.53078 1.25070 0.95301 0.98536 1.00462 0.86260 0.79071 0.83481 0.77741 1.21337 1.20397 1.21675 1.19172 0.92689 0.84630 1.42507 0.91486 1.44034 1.35812 1.01036 1.50323 1.20747 0.88763 0.98395 0.87611 1.22553 1.01155 0.94145 1.00891 1.21072 0.97750 0.89200 0.86004 0.89140 1.45983 1.08623 1.44946 1.36386 1.16937 0.85293 0.79527 0.81131 1.90839 1.22272 1.64115 1.63553 1.24820 0.97589 1.08845 1.06196 1.20818 1.00822 0.94176 0.93890 1.20047 0.94680 1.02511 1.00726 1.25304 0.99339 1.06710 1.06185 1.83053 1.07344 1.36921 1.26104 1.22784 0.95863 0.83210 0.96300 0.92547 1.86485 1.50549 1.30197 1.70292 1.21522 0.98863 0.87368 0.92882 0.93408 0.88807 0.95760 0.91768 0.92285 0.77320 0.82872 0.83829 0.81531 0.77934 0.95236 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.19 55.49 0.62 -25.13 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.18 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.35 3.00 -172.58 -0.52 -14.87 16 10 C 0.17 4.09 5.28 -3.94 -0.02 4.07 16 11 C -0.15 -2.93 5.63 -26.83 -0.15 -3.08 16 12 C 0.16 3.00 2.12 -67.88 -0.14 2.86 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 14 N -0.71 -11.25 4.91 -55.10 -0.27 -11.52 16 15 C 0.59 9.83 7.75 -12.90 -0.10 9.73 16 16 O -0.53 -10.79 16.50 5.18 0.09 -10.70 16 17 C -0.25 -3.38 6.45 -36.79 -0.24 -3.62 16 18 C -0.06 -0.76 10.01 -40.44 -0.40 -1.16 16 19 C -0.15 -1.36 10.15 -41.41 -0.42 -1.78 16 20 C -0.24 -2.00 10.92 29.18 0.32 -1.68 16 21 S 0.20 1.94 22.16 -107.50 -2.38 -0.45 16 22 C 0.08 1.36 3.14 -26.61 -0.08 1.27 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 O -0.57 -8.55 13.16 -35.23 -0.46 -9.01 16 25 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.39 5.29 7.72 -40.82 -0.31 4.97 16 32 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.37 3.96 9.08 45.56 0.41 4.38 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -32.09 323.36 -8.53 -40.62 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.95 Total: 8.00 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.50 Total: 2.02 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.17 Total: -51.53 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.38 Total: -19.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.09 -8.53 -40.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090042749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.711 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds