Wall clock time and date at job start Tue Mar 31 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 14 14 N 1.46504 * 109.45065 * 181.25215 * 12 11 10 15 15 C 1.34770 * 119.99766 * 84.94197 * 14 12 11 16 16 O 1.21705 * 120.00412 * 359.97438 * 15 14 12 17 17 C 1.46582 * 120.00049 * 180.02562 * 15 14 12 18 18 C 1.36649 * 125.46061 * 179.97438 * 17 15 14 19 19 C 1.37465 * 113.30108 * 179.97438 * 18 17 15 20 20 C 1.33824 * 115.09773 * 359.97438 * 19 18 17 21 21 S 1.70611 * 110.95588 * 359.72841 * 20 19 18 22 22 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 23 23 H 1.08999 * 109.49861 * 58.58399 * 22 12 11 24 24 O 1.42899 * 109.52272 * 178.66839 * 22 12 11 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 31 31 H 0.97004 * 120.00075 * 264.94533 * 14 12 11 32 32 H 1.08001 * 123.35096 * 0.02562 * 18 17 15 33 33 H 1.08003 * 122.45390 * 179.97438 * 19 18 17 34 34 H 1.08006 * 124.52028 * 179.97438 * 20 19 18 35 35 H 0.96700 * 114.00229 * 179.85787 * 24 22 12 36 36 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 37 37 H 1.08995 * 109.58430 * 6.43945 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0381 1.2488 14 7 1.0410 -5.6289 2.9574 15 6 -0.0041 -6.2500 3.5390 16 8 -1.1360 -6.0313 3.1487 17 6 0.2222 -7.1880 4.6424 18 6 -0.7514 -7.8760 5.3103 19 6 -0.2588 -8.6894 6.3030 20 6 1.0718 -8.6702 6.4445 21 16 1.7906 -7.6154 5.3124 22 6 2.0734 -4.6099 0.9881 23 1 2.9048 -4.2393 1.5876 24 8 2.3906 -5.9089 0.4841 25 6 1.8216 -3.6548 -0.1828 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3293 1.6671 28 1 -0.6750 -2.6418 0.7418 29 1 -0.3892 -3.3692 3.0579 30 1 1.3401 -2.9478 3.0078 31 1 1.9431 -5.8029 3.2688 32 1 -1.8032 -7.7899 5.0806 33 1 -0.8988 -9.2993 6.9234 34 1 1.6181 -9.2485 7.1750 35 1 3.1780 -5.9317 -0.0768 36 1 1.0518 -4.0695 -0.8336 37 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090042749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:11 Heat of formation + Delta-G solvation = -53.211681 kcal Electronic energy + Delta-G solvation = -21670.360723 eV Core-core repulsion = 18345.935145 eV Total energy + Delta-G solvation = -3324.425578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19649 -39.60507 -38.31584 -37.00344 -35.82361 -33.85916 -32.07244 -30.78689 -29.99492 -27.24152 -25.77855 -24.11489 -23.66449 -22.18865 -21.38703 -20.23292 -19.57035 -18.79674 -18.04262 -17.46698 -16.86602 -16.78992 -16.25133 -16.10964 -15.70567 -15.38724 -15.01240 -14.76060 -14.50255 -13.99115 -13.87403 -13.67755 -13.57839 -13.30666 -13.21766 -12.97936 -12.73434 -12.40145 -12.14289 -12.05948 -11.94809 -11.89579 -11.46421 -11.19212 -11.03305 -10.58965 -10.23182 -9.81977 -9.51610 -8.78344 -7.90590 -5.38409 -0.48788 0.49443 0.94938 1.42820 1.49063 1.50520 1.59459 2.01941 2.15576 2.49171 3.09074 3.26589 3.60183 3.74346 3.86949 4.01547 4.15269 4.18802 4.35699 4.36575 4.50734 4.55914 4.63973 4.81258 4.89432 4.98181 5.04574 5.10237 5.23538 5.33633 5.37257 5.37944 5.58922 5.64747 6.33036 6.40740 6.87455 7.08120 7.08996 7.76957 8.29826 9.16980 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.003566 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.148787 B = 7849.849960 C = 8060.276219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.263 1.263 6 H -0.299 1.299 7 C -0.267 4.267 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.181 3.819 11 C -0.130 4.130 12 C 0.169 3.831 13 H 0.058 0.942 14 N -0.700 5.700 15 C 0.583 3.417 16 O -0.580 6.580 17 C -0.303 4.303 18 C -0.062 4.062 19 C -0.159 4.159 20 C -0.216 4.216 21 S 0.238 5.762 22 C 0.102 3.898 23 H 0.076 0.924 24 O -0.571 6.571 25 C 0.118 3.882 26 H 0.251 0.749 27 H 0.064 0.936 28 H -0.009 1.009 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.144 0.856 33 H 0.171 0.829 34 H 0.204 0.796 35 H 0.397 0.603 36 H 0.012 0.988 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -17.878 13.173 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.226 1.226 7 C -0.396 4.396 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.170 4.170 12 C 0.065 3.935 13 H 0.076 0.924 14 N -0.350 5.350 15 C 0.371 3.629 16 O -0.462 6.462 17 C -0.423 4.423 18 C -0.097 4.097 19 C -0.189 4.189 20 C -0.354 4.354 21 S 0.505 5.495 22 C 0.041 3.959 23 H 0.093 0.907 24 O -0.378 6.378 25 C -0.008 4.008 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.009 0.991 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.244 0.756 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.221 0.779 35 H 0.248 0.752 36 H 0.030 0.970 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.062 -17.343 12.876 23.055 hybrid contribution -1.006 0.800 -0.216 1.303 sum 7.055 -16.543 12.660 21.994 Atomic orbital electron populations 1.70207 1.06971 1.26082 1.54957 1.25894 0.95989 1.01880 1.00857 0.85198 0.78129 0.79081 0.77599 1.21092 1.18779 1.22561 1.19592 0.93261 0.85453 1.41311 0.90374 1.44241 1.35569 1.02170 1.50812 1.20447 0.87922 0.97660 0.88545 1.22270 1.01288 0.94328 0.99117 1.20724 0.97608 0.88504 0.86703 0.92390 1.45730 1.09406 1.44244 1.35578 1.17458 0.84523 0.79478 0.81464 1.90803 1.24110 1.65927 1.65336 1.24557 1.00565 1.10268 1.06890 1.21034 1.00465 0.94018 0.94162 1.20233 0.95554 1.02635 1.00497 1.25822 0.99164 1.05082 1.05327 1.82865 1.04556 1.36516 1.25568 1.22313 0.95486 0.83370 0.94737 0.90660 1.86459 1.52176 1.28354 1.70846 1.21690 0.98845 0.86154 0.94153 0.94023 0.91764 0.99065 0.92490 0.91044 0.75570 0.83877 0.81138 0.77884 0.75241 0.96970 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.73 11.19 21.65 0.24 -55.49 16 2 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 3 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.27 -14.17 9.58 84.03 0.81 -13.36 16 8 H 0.08 3.92 7.89 -2.91 -0.02 3.89 16 9 N -0.60 -29.88 3.00 -699.93 -2.10 -31.98 16 10 C 0.18 9.08 5.28 86.22 0.46 9.54 16 11 C -0.13 -5.31 5.63 30.53 0.17 -5.13 16 12 C 0.17 6.29 2.12 45.02 0.10 6.39 16 13 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 14 N -0.70 -21.85 4.91 -446.45 -2.19 -24.05 16 15 C 0.58 19.87 7.75 86.42 0.67 20.54 16 16 O -0.58 -24.89 16.50 -4.36 -0.07 -24.97 16 17 C -0.30 -7.82 6.45 24.08 0.16 -7.66 16 18 C -0.06 -1.42 10.01 21.72 0.22 -1.20 16 19 C -0.16 -2.44 10.15 21.08 0.21 -2.23 16 20 C -0.22 -2.71 10.92 66.82 0.73 -1.98 16 21 S 0.24 3.90 22.16 -56.49 -1.25 2.65 16 22 C 0.10 3.34 3.14 30.67 0.10 3.43 16 23 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 24 O -0.57 -15.73 13.16 -148.98 -1.96 -17.69 16 25 C 0.12 4.73 6.14 86.36 0.53 5.26 16 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.06 3.60 6.04 -2.38 -0.01 3.58 16 28 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.41 10.21 7.72 -92.70 -0.72 9.49 16 32 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.40 7.06 9.08 -74.06 -0.67 6.39 16 36 H 0.01 0.53 8.14 -2.38 -0.02 0.52 16 37 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 Total: -1.00 -72.92 323.36 -1.03 -73.95 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.28 Total: 20.44 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 4.56 Total: 11.22 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.05 Total: -111.52 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.03 Total: -42.66 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.25 Total: 2.65 kcal Total: -72.92 -1.03 -73.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090042749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.734 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds