Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.91514 * 2 1 4 4 C 1.55118 * 111.16429 * 236.06834 * 2 1 3 5 5 N 1.47430 * 104.94181 * 205.13214 * 4 2 1 6 6 C 1.36932 * 125.64414 * 203.97012 * 5 4 2 7 7 H 1.08004 * 120.00007 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00325 * 0.04052 * 6 5 4 9 9 N 1.31613 * 120.00272 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47035 * 89.99981 * 10 8 6 12 12 H 1.48505 * 109.46892 * 209.99807 * 10 8 6 13 13 H 1.48495 * 109.47061 * 330.00133 * 10 8 6 14 14 C 1.47019 * 108.70432 * 24.00192 * 5 4 2 15 15 C 1.54329 * 107.27148 * 358.94618 * 14 5 4 16 16 H 1.08994 * 110.72263 * 96.34642 * 15 14 5 17 17 C 1.53003 * 110.71620 * 219.44401 * 15 14 5 18 18 N 1.46499 * 109.46708 * 291.15035 * 17 15 14 19 19 C 1.34784 * 119.99893 * 180.02562 * 18 17 15 20 20 O 1.21619 * 119.99540 * 359.97438 * 19 18 17 21 21 C 1.47169 * 119.99864 * 179.72697 * 19 18 17 22 22 C 1.38242 * 128.47444 * 179.97438 * 21 19 18 23 23 N 1.31241 * 111.89142 * 179.97438 * 22 21 19 24 24 N 1.27335 * 120.03631 * 359.97438 * 23 22 21 25 25 S 1.56636 * 109.73992 * 359.72258 * 24 23 22 26 26 H 1.09003 * 109.47143 * 296.09641 * 1 2 3 27 27 H 1.08991 * 109.46991 * 56.10264 * 1 2 3 28 28 H 1.09000 * 109.46541 * 176.09799 * 1 2 3 29 29 H 1.09001 * 110.41445 * 86.20572 * 4 2 1 30 30 H 1.08999 * 110.21134 * 323.95086 * 4 2 1 31 31 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.88452 * 239.52458 * 14 5 4 33 33 H 1.09000 * 109.88050 * 118.35683 * 14 5 4 34 34 H 1.08998 * 109.46692 * 171.15537 * 17 15 14 35 35 H 1.08994 * 109.47584 * 51.15401 * 17 15 14 36 36 H 0.97005 * 120.00261 * 0.02562 * 18 17 15 37 37 H 1.08008 * 124.05747 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4300 -1.2474 -0.7703 6 6 4.4676 -1.5741 -1.6020 7 1 5.4144 -1.8868 -1.1870 8 6 4.3027 -1.5032 -2.9784 9 7 3.1492 -1.1214 -3.4843 10 14 5.7181 -1.9496 -4.1129 11 1 5.6599 -3.3991 -4.4302 12 1 5.6130 -1.1634 -5.3684 13 1 7.0064 -1.6411 -3.4420 14 6 3.4673 -1.2780 0.6991 15 6 2.0861 -0.8079 1.2023 16 1 1.4451 -1.6613 1.4231 17 6 2.2350 0.0877 2.4339 18 7 2.7029 -0.7142 3.5671 19 6 2.9062 -0.1326 4.7659 20 8 2.7017 1.0580 4.9066 21 6 3.3705 -0.9393 5.9058 22 6 3.6338 -0.5290 7.1994 23 7 4.0329 -1.5238 7.9567 24 7 4.1347 -2.6954 7.4685 25 16 3.7205 -2.6770 5.9580 26 1 -0.3633 0.4521 0.9229 27 1 -0.3633 0.5731 -0.8529 28 1 -0.3632 -1.0253 -0.0699 29 1 2.1643 -0.1733 -2.0836 30 1 1.4549 -1.6696 -1.4033 31 1 3.0338 -1.0722 -4.4461 32 1 4.2434 -0.6056 1.0643 33 1 3.6614 -2.2936 1.0439 34 1 1.2705 0.5333 2.6777 35 1 2.9571 0.8767 2.2243 36 1 2.8663 -1.6637 3.4547 37 1 3.5242 0.4883 7.5454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092486237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = 58.933074 kcal Electronic energy + Delta-G solvation = -21160.795902 eV Core-core repulsion = 17873.526036 eV Total energy + Delta-G solvation = -3287.269866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.13976 -39.79288 -38.06490 -34.92133 -33.10379 -32.40817 -30.82562 -29.65810 -27.75793 -26.06474 -25.23947 -23.53441 -22.40563 -20.98241 -19.95419 -19.76214 -19.21269 -17.72404 -16.84618 -16.26161 -16.17819 -15.57113 -15.10527 -14.90487 -14.41132 -14.14574 -13.80410 -13.25250 -13.02846 -12.86542 -12.73400 -12.30012 -12.00509 -11.62769 -11.54621 -11.23103 -10.94357 -10.84602 -10.66971 -10.50558 -10.42783 -10.23856 -10.18119 -10.07338 -9.98802 -9.84489 -9.47899 -9.24143 -8.70579 -6.89659 -5.70780 -3.12911 -0.59956 0.47080 1.14352 1.65143 2.72534 2.77351 3.36381 3.41721 3.43524 3.69200 4.35373 4.41304 4.46693 4.97307 5.12045 5.19467 5.24341 5.43273 5.49350 5.64777 5.76822 5.94380 5.97228 6.08551 6.16527 6.19846 6.44630 6.51224 6.52943 6.69876 6.85070 7.12424 7.30675 7.47003 7.57356 7.79582 7.81237 8.30698 9.16531 9.77308 10.41464 11.32898 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.003464 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.169804 B = 8082.020183 C = 9005.339163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.921 5.921 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.140 3.860 15 C -0.112 4.112 16 H 0.079 0.921 17 C 0.132 3.868 18 N -0.713 5.713 19 C 0.598 3.402 20 O -0.519 6.519 21 C -0.283 4.283 22 C 0.072 3.928 23 N -0.253 5.253 24 N -0.258 5.258 25 S 0.428 5.572 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.013 0.987 31 H 0.252 0.748 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.401 0.599 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -0.707 16.135 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.353 4.353 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.132 4.132 16 H 0.097 0.903 17 C 0.009 3.991 18 N -0.364 5.364 19 C 0.381 3.619 20 O -0.395 6.395 21 C -0.425 4.425 22 C -0.095 4.095 23 N -0.117 5.117 24 N -0.240 5.240 25 S 0.562 5.438 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.239 -1.683 16.512 16.911 hybrid contribution 0.519 0.653 -0.718 1.101 sum -2.719 -1.030 15.794 16.059 Atomic orbital electron populations 1.21655 0.95387 1.01482 1.00741 1.22643 0.94646 0.99554 0.96233 0.90924 1.22029 0.84029 0.95872 0.94620 1.44466 1.10723 1.78875 0.98914 1.19066 0.91146 1.37873 0.87241 0.90516 1.24783 0.97306 1.01815 0.96620 1.69782 1.22577 1.53550 1.11046 0.86081 0.81228 0.77849 0.80386 1.21609 1.21612 1.20692 1.21353 0.93306 0.97144 0.86854 1.22536 0.98853 0.98225 0.93541 0.90301 1.21609 1.00005 0.93905 0.83551 1.46002 1.67439 1.13169 1.09785 1.16474 0.78049 0.86272 0.81127 1.90859 1.51253 1.14017 1.83383 1.28150 1.14017 0.99789 1.00515 1.24482 0.96060 1.01235 0.87734 1.70708 1.15845 0.93999 1.31145 1.78871 1.19985 1.17719 1.07395 1.82741 1.44345 1.03536 1.13149 0.93622 0.92574 0.92911 0.87544 0.96872 0.93674 0.95771 0.96338 0.90916 0.90580 0.76455 0.76743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.32 37.16 0.35 -1.56 16 2 C -0.11 -1.88 3.10 -88.35 -0.27 -2.15 16 3 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 4 C 0.16 3.62 5.37 -2.41 -0.01 3.61 16 5 N -0.60 -14.66 3.40 -169.94 -0.58 -15.24 16 6 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 7 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -26.05 10.09 55.49 0.56 -25.49 16 10 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 14 C 0.14 2.63 6.64 -3.06 -0.02 2.60 16 15 C -0.11 -1.68 2.45 -88.78 -0.22 -1.90 16 16 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 17 C 0.13 1.71 5.00 -4.04 -0.02 1.69 16 18 N -0.71 -7.99 5.43 -61.47 -0.33 -8.32 16 19 C 0.60 7.17 7.80 -12.63 -0.10 7.08 16 20 O -0.52 -7.84 16.98 5.26 0.09 -7.75 16 21 C -0.28 -2.82 6.81 -35.96 -0.25 -3.06 16 22 C 0.07 0.69 11.55 -17.80 -0.21 0.49 16 23 N -0.25 -2.82 11.54 30.36 0.35 -2.47 16 24 N -0.26 -2.81 12.51 60.35 0.75 -2.06 16 25 S 0.43 3.56 23.05 -107.50 -2.48 1.09 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.11 2.78 5.87 -51.93 -0.30 2.48 16 30 H 0.01 0.32 7.99 -51.93 -0.41 -0.09 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.09 8.00 -51.93 -0.42 0.68 16 36 H 0.40 3.73 7.83 -40.82 -0.32 3.41 16 37 H 0.22 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -31.42 326.00 -7.51 -38.93 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.77 Total: -0.34 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.00 Total: 0.22 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.75 Total: -53.57 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.48 Total: 1.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.42 -7.51 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092486237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.862 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds