Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.91514 * 2 1 4 4 C 1.55118 * 111.16429 * 236.06834 * 2 1 3 5 5 N 1.47430 * 104.94181 * 205.13214 * 4 2 1 6 6 C 1.36932 * 125.64414 * 203.97012 * 5 4 2 7 7 H 1.08004 * 120.00007 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00325 * 0.04052 * 6 5 4 9 9 N 1.31613 * 120.00272 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47035 * 89.99981 * 10 8 6 12 12 H 1.48505 * 109.46892 * 209.99807 * 10 8 6 13 13 H 1.48495 * 109.47061 * 330.00133 * 10 8 6 14 14 C 1.47019 * 108.70432 * 24.00192 * 5 4 2 15 15 C 1.54329 * 107.27148 * 358.94618 * 14 5 4 16 16 H 1.08994 * 110.72263 * 96.34642 * 15 14 5 17 17 C 1.53003 * 110.71620 * 219.44401 * 15 14 5 18 18 N 1.46499 * 109.46708 * 291.15035 * 17 15 14 19 19 C 1.34784 * 119.99893 * 180.02562 * 18 17 15 20 20 O 1.21619 * 119.99540 * 359.97438 * 19 18 17 21 21 C 1.47169 * 119.99864 * 179.72697 * 19 18 17 22 22 C 1.38242 * 128.47444 * 179.97438 * 21 19 18 23 23 N 1.31241 * 111.89142 * 179.97438 * 22 21 19 24 24 N 1.27335 * 120.03631 * 359.97438 * 23 22 21 25 25 S 1.56636 * 109.73992 * 359.72258 * 24 23 22 26 26 H 1.09003 * 109.47143 * 296.09641 * 1 2 3 27 27 H 1.08991 * 109.46991 * 56.10264 * 1 2 3 28 28 H 1.09000 * 109.46541 * 176.09799 * 1 2 3 29 29 H 1.09001 * 110.41445 * 86.20572 * 4 2 1 30 30 H 1.08999 * 110.21134 * 323.95086 * 4 2 1 31 31 H 0.97000 * 120.00540 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.88452 * 239.52458 * 14 5 4 33 33 H 1.09000 * 109.88050 * 118.35683 * 14 5 4 34 34 H 1.08998 * 109.46692 * 171.15537 * 17 15 14 35 35 H 1.08994 * 109.47584 * 51.15401 * 17 15 14 36 36 H 0.97005 * 120.00261 * 0.02562 * 18 17 15 37 37 H 1.08008 * 124.05747 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4300 -1.2474 -0.7703 6 6 4.4676 -1.5741 -1.6020 7 1 5.4144 -1.8868 -1.1870 8 6 4.3027 -1.5032 -2.9784 9 7 3.1492 -1.1214 -3.4843 10 14 5.7181 -1.9496 -4.1129 11 1 5.6599 -3.3991 -4.4302 12 1 5.6130 -1.1634 -5.3684 13 1 7.0064 -1.6411 -3.4420 14 6 3.4673 -1.2780 0.6991 15 6 2.0861 -0.8079 1.2023 16 1 1.4451 -1.6613 1.4231 17 6 2.2350 0.0877 2.4339 18 7 2.7029 -0.7142 3.5671 19 6 2.9062 -0.1326 4.7659 20 8 2.7017 1.0580 4.9066 21 6 3.3705 -0.9393 5.9058 22 6 3.6338 -0.5290 7.1994 23 7 4.0329 -1.5238 7.9567 24 7 4.1347 -2.6954 7.4685 25 16 3.7205 -2.6770 5.9580 26 1 -0.3633 0.4521 0.9229 27 1 -0.3633 0.5731 -0.8529 28 1 -0.3632 -1.0253 -0.0699 29 1 2.1643 -0.1733 -2.0836 30 1 1.4549 -1.6696 -1.4033 31 1 3.0338 -1.0722 -4.4461 32 1 4.2434 -0.6056 1.0643 33 1 3.6614 -2.2936 1.0439 34 1 1.2705 0.5333 2.6777 35 1 2.9571 0.8767 2.2243 36 1 2.8663 -1.6637 3.4547 37 1 3.5242 0.4883 7.5454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092486237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = 37.037162 kcal Electronic energy + Delta-G solvation = -21161.745380 eV Core-core repulsion = 17873.526036 eV Total energy + Delta-G solvation = -3288.219344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.92214 -40.80826 -39.49570 -36.17039 -34.72364 -33.24784 -32.52893 -30.93492 -28.72627 -27.75455 -26.59439 -24.82370 -23.56957 -21.93372 -21.51419 -20.86502 -20.18852 -18.91267 -18.50457 -17.25002 -17.08135 -16.92840 -16.34646 -15.94692 -15.67545 -15.55833 -15.15457 -14.68246 -14.32715 -14.01766 -13.82990 -13.51301 -13.36678 -13.01478 -13.00588 -12.73111 -12.68277 -12.43903 -11.95912 -11.83232 -11.64275 -11.51084 -11.37628 -11.29391 -11.19008 -11.02854 -10.93411 -10.71864 -10.23017 -8.84698 -7.75156 -5.19004 -1.36893 -0.24999 0.40917 0.87304 1.48053 1.48946 1.57581 1.82256 1.85992 2.50845 2.95374 3.34263 3.53925 3.62324 3.70103 3.83632 3.91129 4.00199 4.40194 4.53402 4.58292 4.65067 4.78895 4.81361 4.88087 4.99825 5.11504 5.15590 5.28194 5.42596 5.43774 5.53576 5.76270 5.88062 6.23780 6.35300 6.55305 6.89805 7.14051 7.82341 8.45140 9.26081 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.003464 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.169804 B = 8082.020183 C = 9005.339163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.068 0.932 4 C 0.161 3.839 5 N -0.629 5.629 6 C -0.238 4.238 7 H 0.080 0.920 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.976 3.024 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.134 3.866 15 C -0.092 4.092 16 H 0.099 0.901 17 C 0.143 3.857 18 N -0.706 5.706 19 C 0.605 3.395 20 O -0.552 6.552 21 C -0.301 4.301 22 C 0.078 3.922 23 N -0.276 5.276 24 N -0.287 5.287 25 S 0.500 5.500 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H -0.010 1.010 31 H 0.246 0.754 32 H 0.023 0.977 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 -1.260 17.646 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.086 0.914 4 C 0.036 3.964 5 N -0.355 5.355 6 C -0.367 4.367 7 H 0.098 0.902 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.804 3.196 11 H -0.214 1.214 12 H -0.222 1.222 13 H -0.196 1.196 14 C 0.009 3.991 15 C -0.111 4.111 16 H 0.118 0.882 17 C 0.020 3.980 18 N -0.358 5.358 19 C 0.389 3.611 20 O -0.431 6.431 21 C -0.442 4.442 22 C -0.090 4.090 23 N -0.139 5.139 24 N -0.269 5.269 25 S 0.634 5.366 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.008 0.992 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.398 -2.268 18.065 18.522 hybrid contribution 0.598 0.761 -1.198 1.540 sum -2.800 -1.507 16.867 17.164 Atomic orbital electron populations 1.21612 0.92741 1.01963 1.02264 1.22464 0.96699 0.98442 0.94398 0.91387 1.21798 0.83733 0.94906 0.95927 1.44789 1.10587 1.78872 1.01205 1.19440 0.92103 1.37096 0.88053 0.90210 1.25577 0.99585 1.02582 0.98117 1.70050 1.24217 1.54801 1.10637 0.85114 0.78956 0.77279 0.78201 1.21379 1.22174 1.19576 1.21568 0.95677 0.97897 0.83993 1.22377 0.96581 0.98769 0.93417 0.88240 1.21367 1.00504 0.93082 0.83056 1.45855 1.67140 1.13583 1.09200 1.16558 0.77269 0.85887 0.81402 1.90846 1.52768 1.15529 1.83949 1.27958 1.15256 1.01004 1.00022 1.24773 0.94945 1.01718 0.87535 1.70767 1.16953 0.94223 1.31911 1.78673 1.20881 1.18081 1.09230 1.82448 1.41788 1.01435 1.10908 0.90499 0.92918 0.92708 0.91536 0.99203 0.94435 0.95930 0.95030 0.89429 0.91956 0.75209 0.75189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.32 71.98 0.67 -2.66 16 2 C -0.10 -3.28 3.10 -9.32 -0.03 -3.31 16 3 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 4 C 0.16 7.48 5.37 86.93 0.47 7.95 16 5 N -0.63 -30.69 3.40 -691.57 -2.35 -33.04 16 6 C -0.24 -12.92 10.27 84.03 0.86 -12.06 16 7 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 9 N -0.95 -55.28 10.09 21.65 0.22 -55.06 16 10 Si 0.98 44.78 29.55 68.60 2.03 46.81 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.13 4.84 6.64 86.73 0.58 5.42 16 15 C -0.09 -2.55 2.45 -9.60 -0.02 -2.57 16 16 H 0.10 2.40 8.04 -2.39 -0.02 2.38 16 17 C 0.14 3.31 5.00 86.38 0.43 3.75 16 18 N -0.71 -13.82 5.43 -466.63 -2.53 -16.36 16 19 C 0.60 13.14 7.80 86.59 0.68 13.81 16 20 O -0.55 -15.72 16.98 -4.09 -0.07 -15.79 16 21 C -0.30 -5.31 6.81 24.62 0.17 -5.15 16 22 C 0.08 1.37 11.55 84.78 0.98 2.35 16 23 N -0.28 -5.73 11.54 -57.86 -0.67 -6.40 16 24 N -0.29 -5.73 12.51 37.02 0.46 -5.27 16 25 S 0.50 7.03 23.05 -56.49 -1.30 5.73 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 29 H 0.07 3.63 5.87 -2.39 -0.01 3.62 16 30 H -0.01 -0.50 7.99 -2.39 -0.02 -0.52 16 31 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.02 0.83 7.73 -2.39 -0.02 0.82 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.67 8.00 -2.39 -0.02 1.65 16 36 H 0.41 6.28 7.83 -92.70 -0.73 5.55 16 37 H 0.23 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -69.41 326.00 1.41 -68.01 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.37 Total: 7.04 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.24 Total: 4.33 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.87 Total: -116.12 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.07 Total: -15.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.30 Total: 5.73 kcal Total: -69.41 1.41 -68.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092486237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.045 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds