Wall clock time and date at job start Tue Mar 31 2020 03:48:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 C 1.53001 * 109.47268 * 9.22789 * 3 2 1
5 5 N 1.46497 * 109.46918 * 179.97438 * 4 3 2
6 6 C 1.46498 * 120.00005 * 269.99727 * 5 4 3
7 7 C 1.50699 * 109.47230 * 270.00086 * 6 5 4
8 8 H 1.07998 * 120.00071 * 0.02562 * 7 6 5
9 9 C 1.37880 * 119.99979 * 179.97438 * 7 6 5
10 10 N 1.31509 * 119.99553 * 179.97438 * 9 7 6
11 11 Si 1.86800 * 119.99947 * 0.02562 * 9 7 6
12 12 H 1.48494 * 109.47029 * 90.00039 * 11 9 7
13 13 H 1.48503 * 109.46786 * 209.99789 * 11 9 7
14 14 H 1.48500 * 109.47059 * 329.99708 * 11 9 7
15 15 C 1.34776 * 120.00113 * 89.99508 * 5 4 3
16 16 O 1.21279 * 120.00394 * 179.97438 * 15 5 4
17 17 C 1.50703 * 119.99887 * 0.02562 * 15 5 4
18 18 N 1.46502 * 109.47155 * 179.97438 * 17 15 5
19 19 N 1.40591 * 127.38312 * 270.13475 * 18 17 15
20 20 N 1.28909 * 106.83212 * 180.28463 * 19 18 17
21 21 N 1.28417 * 110.33864 * 359.74514 * 20 19 18
22 22 C 1.31541 * 110.50596 * 0.02562 * 21 20 19
23 23 S 1.76195 * 126.45625 * 179.97438 * 22 21 20
24 24 H 1.09000 * 109.46772 * 249.22192 * 3 2 1
25 25 H 1.09002 * 109.46881 * 129.22676 * 3 2 1
26 26 H 1.08997 * 109.47208 * 60.00010 * 4 3 2
27 27 H 1.08998 * 109.46597 * 299.99780 * 4 3 2
28 28 H 1.09000 * 109.47224 * 30.00619 * 6 5 4
29 29 H 1.08999 * 109.47126 * 149.99858 * 6 5 4
30 30 H 0.97011 * 119.99926 * 179.97438 * 10 9 7
31 31 H 1.08997 * 109.47621 * 59.99327 * 17 15 5
32 32 H 1.09003 * 109.47185 * 299.99076 * 17 15 5
33 33 H 1.41005 * 99.99931 * 90.02274 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1187 -1.4229 -0.2313
5 7 4.5836 -1.4221 -0.2319
6 6 5.3155 -1.2185 -1.4845
7 6 5.5672 -2.5511 -2.1417
8 1 5.2166 -3.4589 -1.6733
9 6 6.2440 -2.6113 -3.3414
10 7 6.4641 -3.7743 -3.9145
11 14 6.8498 -1.0410 -4.1518
12 1 8.2233 -0.7368 -3.6766
13 1 6.8641 -1.2187 -5.6261
14 1 5.9433 0.0805 -3.7972
15 6 5.2581 -1.6086 0.9199
16 8 6.4709 -1.6084 0.9194
17 6 4.5052 -1.8186 2.2084
18 7 5.4578 -1.9969 3.3071
19 7 6.0154 -3.2031 3.7662
20 7 6.7945 -2.9041 4.7487
21 7 6.7896 -1.6362 4.9523
22 6 5.9915 -1.0351 4.0967
23 16 5.6717 0.6949 4.0007
24 1 2.9711 0.3654 0.9608
25 1 2.9710 0.6507 -0.7961
26 1 2.7555 -1.7876 -1.1922
27 1 2.7556 -2.0729 0.5648
28 1 4.7259 -0.5899 -2.1518
29 1 6.2677 -0.7316 -1.2740
30 1 6.9400 -3.8167 -4.7588
31 1 3.8793 -2.7068 2.1230
32 1 3.8779 -0.9499 2.4084
33 1 6.6866 1.0820 3.1017
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001177739606.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:48:22
Heat of formation + Delta-G solvation = 129.148387 kcal
Electronic energy + Delta-G solvation = -21237.567522 eV
Core-core repulsion = 17849.802078 eV
Total energy + Delta-G solvation = -3387.765445 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 296.080 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-43.08497 -39.89800 -37.19327 -35.82178 -35.15371 -32.99015 -32.34240 -31.32217
-29.83769 -27.69165 -24.52575 -24.11060 -23.44207 -22.45770 -19.42236 -18.68979
-18.08712 -17.54840 -17.27909 -17.01364 -16.26066 -15.71390 -15.47532 -15.26978
-14.96086 -14.40031 -14.00527 -13.80947 -13.42560 -12.91831 -12.80351 -12.75073
-12.54339 -12.41633 -12.10147 -12.02600 -11.84173 -11.33224 -11.22090 -11.18937
-11.14405 -10.75359 -10.42236 -10.37234 -9.81319 -9.58076 -8.92100 -8.78752
-8.32242 -6.27465 -4.29464 0.28927 0.63983 1.60328 1.83340 2.29372
2.44152 2.59808 2.62307 3.09840 3.13970 3.18289 3.24547 3.77518
3.93954 4.20412 4.32669 4.48734 4.53300 4.73733 4.76519 5.03637
5.05244 5.11178 5.16034 5.44996 5.62622 5.75588 6.27020 6.56315
6.78249 7.33816 7.35952 7.58375 8.13551 8.20595 8.32274 8.74837
9.29922 10.85438
Molecular weight = 296.08amu
Principal moments of inertia in cm(-1)
A = 0.011773 B = 0.005538 C = 0.004373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2377.743706 B = 5054.653196 C = 6401.486258
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.434 5.434
2 C 0.212 3.788
3 C -0.052 4.052
4 C 0.108 3.892
5 N -0.579 5.579
6 C 0.216 3.784
7 C -0.540 4.540
8 H 0.077 0.923
9 C 0.076 3.924
10 N -0.890 5.890
11 Si 0.874 3.126
12 H -0.274 1.274
13 H -0.283 1.283
14 H -0.265 1.265
15 C 0.499 3.501
16 O -0.517 6.517
17 C 0.088 3.912
18 N -0.330 5.330
19 N -0.046 5.046
20 N -0.045 5.045
21 N -0.288 5.288
22 C 0.222 3.778
23 S -0.005 6.005
24 H 0.109 0.891
25 H 0.119 0.881
26 H 0.106 0.894
27 H 0.081 0.919
28 H 0.039 0.961
29 H 0.040 0.960
30 H 0.267 0.733
31 H 0.142 0.858
32 H 0.140 0.860
33 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.046 10.946 11.426 17.321
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.111 5.111
2 C -0.106 4.106
3 C -0.093 4.093
4 C -0.018 4.018
5 N -0.310 5.310
6 C 0.097 3.903
7 C -0.578 4.578
8 H 0.095 0.905
9 C -0.128 4.128
10 N -0.527 5.527
11 Si 0.701 3.299
12 H -0.199 1.199
13 H -0.209 1.209
14 H -0.189 1.189
15 C 0.282 3.718
16 O -0.392 6.392
17 C -0.039 4.039
18 N -0.129 5.129
19 N -0.033 5.033
20 N -0.040 5.040
21 N -0.142 5.142
22 C -0.166 4.166
23 S 0.142 5.858
24 H 0.127 0.873
25 H 0.137 0.863
26 H 0.125 0.875
27 H 0.099 0.901
28 H 0.057 0.943
29 H 0.058 0.942
30 H 0.077 0.923
31 H 0.160 0.840
32 H 0.158 0.842
33 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -7.695 10.521 11.899 17.650
hybrid contribution 1.158 0.440 -1.826 2.206
sum -6.537 10.961 10.074 16.259
Atomic orbital electron populations
1.81256 1.12936 1.08106 1.08836 1.28916 0.94919 0.93545 0.93231
1.19871 0.81865 1.01339 1.06264 1.21514 0.80998 0.93606 1.05676
1.47855 1.05379 1.69477 1.08320 1.19834 0.92492 0.98463 0.79539
1.21233 1.38098 0.92410 1.06056 0.90488 1.24850 0.95030 0.96102
0.96780 1.69879 1.40647 1.24050 1.18115 0.86893 0.80121 0.83750
0.79136 1.19943 1.20851 1.18935 1.20098 0.88321 0.78809 0.84590
1.90795 1.13262 1.49521 1.85668 1.22245 0.90169 1.07844 0.83592
1.51664 1.31862 1.05289 1.24101 1.82641 1.08618 1.03366 1.08656
1.78042 1.11442 1.06540 1.07998 1.75038 1.17376 0.99943 1.21814
1.26759 0.97899 0.98231 0.93734 1.87033 1.45574 0.90045 1.63184
0.87291 0.86274 0.87535 0.90063 0.94303 0.94240 0.92275 0.83990
0.84197 0.90467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -5.24 18.54 42.15 0.78 -4.46 16
2 C 0.21 1.87 15.43 -20.76 -0.32 1.55 16
3 C -0.05 -0.33 6.03 -29.52 -0.18 -0.51 16
4 C 0.11 1.02 5.17 -4.04 -0.02 0.99 16
5 N -0.58 -8.42 2.46 -175.07 -0.43 -8.85 16
6 C 0.22 4.23 4.23 -5.20 -0.02 4.21 16
7 C -0.54 -13.65 9.94 -34.44 -0.34 -14.00 16
8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16
9 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16
10 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16
11 Si 0.87 19.51 27.47 -169.99 -4.67 14.84 16
12 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16
13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
14 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16
15 C 0.50 7.54 7.74 -10.98 -0.09 7.46 16
16 O -0.52 -10.65 16.01 5.56 0.09 -10.56 16
17 C 0.09 0.90 5.41 -5.19 -0.03 0.88 16
18 N -0.33 -4.50 3.18 -62.48 -0.20 -4.70 16
19 N -0.05 -0.77 13.93 60.35 0.84 0.07 16
20 N -0.04 -0.76 13.38 60.35 0.81 0.05 16
21 N -0.29 -4.51 12.20 30.50 0.37 -4.13 16
22 C 0.22 2.91 8.45 -89.18 -0.75 2.15 16
23 S -0.01 -0.04 25.76 -107.50 -2.77 -2.81 16
24 H 0.11 0.39 7.22 -51.93 -0.38 0.01 16
25 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16
26 H 0.11 1.14 8.07 -51.93 -0.42 0.72 16
27 H 0.08 0.55 6.44 -51.93 -0.33 0.22 16
28 H 0.04 0.69 7.13 -51.93 -0.37 0.32 16
29 H 0.04 0.84 6.85 -51.93 -0.36 0.49 16
30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
31 H 0.14 1.15 7.40 -51.93 -0.38 0.76 16
32 H 0.14 0.78 6.90 -51.93 -0.36 0.42 16
33 H 0.13 1.09 9.55 96.90 0.93 2.02 16
LS Contribution 319.56 15.07 4.82 4.82
Total: -1.00 -35.74 319.56 -3.12 -38.86
By element:
Atomic # 1 Polarization: -1.12 SS G_CDS: -1.68 Total: -2.81 kcal
Atomic # 6 Polarization: 6.52 SS G_CDS: -1.85 Total: 4.67 kcal
Atomic # 7 Polarization: -49.95 SS G_CDS: 2.95 Total: -47.01 kcal
Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal
Atomic # 14 Polarization: 19.51 SS G_CDS: -4.67 Total: 14.84 kcal
Atomic # 16 Polarization: -0.04 SS G_CDS: -2.77 Total: -2.81 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -35.74 -3.12 -38.86 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001177739606.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 168.012 kcal
(2) G-P(sol) polarization free energy of solvation -35.744 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) 129.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds