Wall clock time and date at job start Tue Mar 31 2020 03:48:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 C 1.53001 * 109.47268 * 9.22789 * 3 2 1
5 5 N 1.46497 * 109.46918 * 179.97438 * 4 3 2
6 6 C 1.46498 * 120.00005 * 269.99727 * 5 4 3
7 7 C 1.50699 * 109.47230 * 270.00086 * 6 5 4
8 8 H 1.07998 * 120.00071 * 0.02562 * 7 6 5
9 9 C 1.37880 * 119.99979 * 179.97438 * 7 6 5
10 10 N 1.31509 * 119.99553 * 179.97438 * 9 7 6
11 11 Si 1.86800 * 119.99947 * 0.02562 * 9 7 6
12 12 H 1.48494 * 109.47029 * 90.00039 * 11 9 7
13 13 H 1.48503 * 109.46786 * 209.99789 * 11 9 7
14 14 H 1.48500 * 109.47059 * 329.99708 * 11 9 7
15 15 C 1.34776 * 120.00113 * 89.99508 * 5 4 3
16 16 O 1.21279 * 120.00394 * 179.97438 * 15 5 4
17 17 C 1.50703 * 119.99887 * 0.02562 * 15 5 4
18 18 N 1.46502 * 109.47155 * 179.97438 * 17 15 5
19 19 N 1.40591 * 127.38312 * 270.13475 * 18 17 15
20 20 N 1.28909 * 106.83212 * 180.28463 * 19 18 17
21 21 N 1.28417 * 110.33864 * 359.74514 * 20 19 18
22 22 C 1.31541 * 110.50596 * 0.02562 * 21 20 19
23 23 S 1.76195 * 126.45625 * 179.97438 * 22 21 20
24 24 H 1.09000 * 109.46772 * 249.22192 * 3 2 1
25 25 H 1.09002 * 109.46881 * 129.22676 * 3 2 1
26 26 H 1.08997 * 109.47208 * 60.00010 * 4 3 2
27 27 H 1.08998 * 109.46597 * 299.99780 * 4 3 2
28 28 H 1.09000 * 109.47224 * 30.00619 * 6 5 4
29 29 H 1.08999 * 109.47126 * 149.99858 * 6 5 4
30 30 H 0.97011 * 119.99926 * 179.97438 * 10 9 7
31 31 H 1.08997 * 109.47621 * 59.99327 * 17 15 5
32 32 H 1.09003 * 109.47185 * 299.99076 * 17 15 5
33 33 H 1.41005 * 99.99931 * 90.02274 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1187 -1.4229 -0.2313
5 7 4.5836 -1.4221 -0.2319
6 6 5.3155 -1.2185 -1.4845
7 6 5.5672 -2.5511 -2.1417
8 1 5.2166 -3.4589 -1.6733
9 6 6.2440 -2.6113 -3.3414
10 7 6.4641 -3.7743 -3.9145
11 14 6.8498 -1.0410 -4.1518
12 1 8.2233 -0.7368 -3.6766
13 1 6.8641 -1.2187 -5.6261
14 1 5.9433 0.0805 -3.7972
15 6 5.2581 -1.6086 0.9199
16 8 6.4709 -1.6084 0.9194
17 6 4.5052 -1.8186 2.2084
18 7 5.4578 -1.9969 3.3071
19 7 6.0154 -3.2031 3.7662
20 7 6.7945 -2.9041 4.7487
21 7 6.7896 -1.6362 4.9523
22 6 5.9915 -1.0351 4.0967
23 16 5.6717 0.6949 4.0007
24 1 2.9711 0.3654 0.9608
25 1 2.9710 0.6507 -0.7961
26 1 2.7555 -1.7876 -1.1922
27 1 2.7556 -2.0729 0.5648
28 1 4.7259 -0.5899 -2.1518
29 1 6.2677 -0.7316 -1.2740
30 1 6.9400 -3.8167 -4.7588
31 1 3.8793 -2.7068 2.1230
32 1 3.8779 -0.9499 2.4084
33 1 6.6866 1.0820 3.1017
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001177739606.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:48:19
Heat of formation + Delta-G solvation = 101.546511 kcal
Electronic energy + Delta-G solvation = -21238.764429 eV
Core-core repulsion = 17849.802078 eV
Total energy + Delta-G solvation = -3388.962352 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 296.080 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-44.17449 -41.08003 -38.05429 -36.91419 -36.24510 -34.81892 -33.45240 -32.39344
-31.02014 -29.10760 -25.50377 -25.26785 -24.55558 -23.90912 -20.59688 -19.56354
-19.23706 -18.70544 -18.47479 -18.18940 -17.35028 -16.91182 -16.55479 -16.25066
-15.91600 -15.73215 -15.02781 -14.97062 -14.58146 -14.36554 -13.92289 -13.79338
-13.56031 -13.45277 -13.24617 -13.01729 -12.95387 -12.70473 -12.44250 -12.32527
-12.30671 -12.00767 -11.83987 -11.71959 -11.40655 -10.85068 -10.80579 -9.64470
-9.58026 -8.30744 -6.36419 -0.64721 -0.30273 0.68998 0.81307 1.36147
1.40397 1.41371 1.46809 1.47504 1.76925 1.95089 2.14100 2.33462
2.97736 3.00012 3.08220 3.45174 3.54739 3.83526 3.97899 4.08395
4.09420 4.18577 4.60051 4.67527 4.82752 4.86834 4.96298 5.12697
5.44984 5.50431 6.21384 6.41549 6.68624 6.72167 7.05074 7.08426
7.28851 8.86075
Molecular weight = 296.08amu
Principal moments of inertia in cm(-1)
A = 0.011773 B = 0.005538 C = 0.004373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2377.743706 B = 5054.653196 C = 6401.486258
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.494 5.494
2 C 0.245 3.755
3 C -0.041 4.041
4 C 0.099 3.901
5 N -0.577 5.577
6 C 0.223 3.777
7 C -0.536 4.536
8 H 0.030 0.970
9 C 0.007 3.993
10 N -0.950 5.950
11 Si 0.941 3.059
12 H -0.284 1.284
13 H -0.286 1.286
14 H -0.217 1.217
15 C 0.496 3.504
16 O -0.580 6.580
17 C 0.088 3.912
18 N -0.329 5.329
19 N -0.077 5.077
20 N -0.066 5.066
21 N -0.313 5.313
22 C 0.220 3.780
23 S 0.048 5.952
24 H 0.151 0.849
25 H 0.133 0.867
26 H 0.092 0.908
27 H 0.113 0.887
28 H 0.072 0.928
29 H 0.027 0.973
30 H 0.265 0.735
31 H 0.169 0.831
32 H 0.198 0.802
33 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.641 14.351 12.160 20.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.172 5.172
2 C -0.072 4.072
3 C -0.082 4.082
4 C -0.025 4.025
5 N -0.306 5.306
6 C 0.101 3.899
7 C -0.575 4.575
8 H 0.048 0.952
9 C -0.190 4.190
10 N -0.590 5.590
11 Si 0.764 3.236
12 H -0.210 1.210
13 H -0.212 1.212
14 H -0.139 1.139
15 C 0.282 3.718
16 O -0.460 6.460
17 C -0.036 4.036
18 N -0.128 5.128
19 N -0.064 5.064
20 N -0.062 5.062
21 N -0.167 5.167
22 C -0.167 4.167
23 S 0.194 5.806
24 H 0.169 0.831
25 H 0.151 0.849
26 H 0.110 0.890
27 H 0.131 0.869
28 H 0.090 0.910
29 H 0.045 0.955
30 H 0.074 0.926
31 H 0.186 0.814
32 H 0.215 0.785
33 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -9.372 13.944 12.656 21.035
hybrid contribution 1.629 -0.642 -2.032 2.682
sum -7.743 13.302 10.624 18.703
Atomic orbital electron populations
1.81314 1.14874 1.09913 1.11070 1.29163 0.94985 0.91776 0.91309
1.19928 0.79875 0.99217 1.09155 1.21802 0.77724 0.96570 1.06432
1.47736 1.07291 1.68929 1.06685 1.19505 0.93377 0.95206 0.81804
1.21624 1.36493 0.93691 1.05667 0.95160 1.25879 0.95561 0.99688
0.97919 1.70069 1.42876 1.27090 1.18958 0.85819 0.79668 0.80629
0.77444 1.20989 1.21230 1.13901 1.20829 0.87784 0.77166 0.85993
1.90778 1.16187 1.52200 1.86789 1.22664 0.89186 1.11610 0.80149
1.51836 1.31927 1.04588 1.24458 1.82540 1.09407 1.05302 1.09141
1.78000 1.12063 1.07535 1.08609 1.74965 1.18712 0.99725 1.23301
1.27540 0.96396 1.00268 0.92493 1.86879 1.44908 0.85815 1.63001
0.83141 0.84894 0.88991 0.86943 0.90997 0.95541 0.92582 0.81393
0.78512 0.90267
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -10.64 18.54 20.01 0.37 -10.27 16
2 C 0.25 3.33 15.43 89.44 1.38 4.71 16
3 C -0.04 -0.29 6.03 28.79 0.17 -0.12 16
4 C 0.10 1.46 5.17 86.38 0.45 1.90 16
5 N -0.58 -15.11 2.46 -826.17 -2.03 -17.14 16
6 C 0.22 8.23 4.23 85.63 0.36 8.59 16
7 C -0.54 -27.45 9.94 25.60 0.25 -27.20 16
8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16
9 C 0.01 0.39 5.47 84.66 0.46 0.86 16
10 N -0.95 -57.22 13.96 21.45 0.30 -56.93 16
11 Si 0.94 39.67 27.47 68.60 1.88 41.56 16
12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
13 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16
14 H -0.22 -7.40 6.54 99.48 0.65 -6.75 16
15 C 0.50 13.82 7.74 87.66 0.68 14.50 16
16 O -0.58 -23.52 16.01 -3.03 -0.05 -23.56 16
17 C 0.09 1.48 5.41 85.63 0.46 1.94 16
18 N -0.33 -8.28 3.18 -351.59 -1.12 -9.40 16
19 N -0.08 -2.53 13.93 37.02 0.52 -2.02 16
20 N -0.07 -2.28 13.38 37.02 0.50 -1.78 16
21 N -0.31 -9.58 12.20 -57.41 -0.70 -10.28 16
22 C 0.22 5.30 8.45 179.84 1.52 6.82 16
23 S 0.05 0.65 25.76 -56.49 -1.46 -0.81 16
24 H 0.15 -0.07 7.22 -2.39 -0.02 -0.09 16
25 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16
26 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16
27 H 0.11 0.98 6.44 -2.39 -0.02 0.97 16
28 H 0.07 2.23 7.13 -2.39 -0.02 2.21 16
29 H 0.03 1.08 6.85 -2.39 -0.02 1.06 16
30 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16
31 H 0.17 2.02 7.40 -2.39 -0.02 2.00 16
32 H 0.20 0.92 6.90 -2.39 -0.02 0.91 16
33 H 0.13 1.76 9.55 73.80 0.70 2.47 16
Total: -1.00 -86.26 319.56 5.79 -80.46
By element:
Atomic # 1 Polarization: -3.68 SS G_CDS: 1.84 Total: -1.84 kcal
Atomic # 6 Polarization: 6.26 SS G_CDS: 5.74 Total: 12.00 kcal
Atomic # 7 Polarization: -105.64 SS G_CDS: -2.17 Total: -107.81 kcal
Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.56 kcal
Atomic # 14 Polarization: 39.67 SS G_CDS: 1.88 Total: 41.56 kcal
Atomic # 16 Polarization: 0.65 SS G_CDS: -1.46 Total: -0.81 kcal
Total: -86.26 5.79 -80.46 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001177739606.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 182.009 kcal
(2) G-P(sol) polarization free energy of solvation -86.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.754 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) 101.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds