Wall clock time and date at job start Tue Mar 31 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00167 * 2 1 4 4 H 1.48507 * 109.47276 * 240.00312 * 3 2 1 5 5 H 1.48504 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47130 * 120.00057 * 3 2 1 7 7 C 1.37876 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00154 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00179 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.39990 * 293.54242 * 9 7 2 11 11 O 1.42098 * 106.39926 * 66.46113 * 9 7 2 12 12 N 1.65601 * 107.22062 * 180.02562 * 9 7 2 13 13 C 1.39894 * 120.00102 * 67.61936 * 12 9 7 14 14 C 1.38740 * 120.11737 * 327.38766 * 13 12 9 15 15 C 1.38218 * 120.00066 * 180.02562 * 14 13 12 16 16 C 1.38300 * 120.20936 * 0.02562 * 15 14 13 17 17 C 1.38205 * 120.16538 * 359.97438 * 16 15 14 18 18 C 1.38665 * 120.01573 * 359.72940 * 17 16 15 19 19 N 1.40047 * 119.95372 * 179.74287 * 18 17 16 20 20 C 1.34581 * 120.33797 * 19.08888 * 19 18 17 21 21 O 1.21303 * 119.63327 * 180.49947 * 20 19 18 22 22 C 1.50500 * 120.73510 * 0.52465 * 20 19 18 23 23 C 1.50669 * 120.15161 * 180.02562 * 17 16 15 24 24 H 0.96995 * 119.99665 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99695 * 247.62672 * 12 9 7 26 26 H 1.07999 * 120.00035 * 0.03213 * 14 13 12 27 27 H 1.07998 * 119.89211 * 179.97438 * 15 14 13 28 28 H 1.08003 * 119.91482 * 180.02562 * 16 15 14 29 29 H 0.96997 * 119.86982 * 198.82988 * 19 18 17 30 30 H 1.08996 * 109.39902 * 204.67345 * 22 20 19 31 31 H 1.08993 * 109.40082 * 84.93183 * 22 20 19 32 32 H 1.09006 * 109.45596 * 266.02148 * 23 17 16 33 33 H 1.09000 * 109.46080 * 25.99029 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4519 -2.7955 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 3.0619 -4.1356 1.1197 14 6 3.4525 -3.0557 1.8983 15 6 4.2569 -3.2561 3.0043 16 6 4.6754 -4.5312 3.3385 17 6 4.2910 -5.6125 2.5684 18 6 3.4791 -5.4214 1.4606 19 7 3.0948 -6.5174 0.6780 20 6 3.1685 -7.7662 1.1742 21 8 2.8409 -8.7070 0.4820 22 6 3.6525 -8.0086 2.5785 23 6 4.7466 -7.0015 2.9331 24 1 -0.4849 0.8400 0.0004 25 1 2.3430 -4.5086 -0.7773 26 1 3.1279 -2.0585 1.6402 27 1 4.5601 -2.4142 3.6089 28 1 5.3035 -4.6824 4.2040 29 1 2.7701 -6.3760 -0.2250 30 1 4.0525 -9.0196 2.6542 31 1 2.8196 -7.8972 3.2727 32 1 5.6547 -7.2426 2.3804 33 1 4.9497 -7.0479 4.0030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192986301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:05 Heat of formation + Delta-G solvation = -135.345740 kcal Electronic energy + Delta-G solvation = -21870.621089 eV Core-core repulsion = 18406.800816 eV Total energy + Delta-G solvation = -3463.820273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.03120 -39.90090 -37.61188 -36.71068 -36.31325 -36.18360 -35.25164 -33.70812 -30.56916 -29.58011 -28.38802 -25.52888 -23.99595 -23.34847 -21.21564 -20.20761 -19.61746 -19.48545 -18.18839 -18.04368 -17.58633 -17.16819 -16.83584 -16.09209 -15.82225 -15.72795 -15.43649 -15.24471 -14.76926 -14.41736 -14.01680 -13.78774 -13.50990 -13.15598 -13.03709 -12.93939 -12.80142 -12.65223 -12.58774 -12.40705 -12.30380 -11.93364 -11.77186 -11.58019 -11.23564 -11.09708 -10.94214 -9.33865 -8.86452 -8.73868 -7.54436 0.03791 0.23628 0.44157 1.36641 1.38350 1.49287 1.52054 1.98502 2.19172 2.54651 2.70887 2.81930 3.38492 3.56458 3.72337 3.89539 4.10613 4.15767 4.16587 4.35034 4.40344 4.55042 4.73565 4.89492 4.99102 5.04694 5.18472 5.22198 5.29058 5.29595 5.64176 5.65226 5.82496 5.89273 6.06655 6.25755 6.71745 6.88669 8.16793 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.023984 B = 0.005401 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.185048 B = 5183.141648 C = 6013.654895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.241 1.241 7 C -1.029 5.029 8 H 0.132 0.868 9 S 2.708 3.292 10 O -1.025 7.025 11 O -1.038 7.038 12 N -1.062 6.062 13 C 0.133 3.867 14 C -0.175 4.175 15 C -0.102 4.102 16 C -0.098 4.098 17 C -0.099 4.099 18 C 0.104 3.896 19 N -0.662 5.662 20 C 0.513 3.487 21 O -0.579 6.579 22 C -0.133 4.133 23 C -0.066 4.066 24 H 0.301 0.699 25 H 0.417 0.583 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.177 0.823 29 H 0.402 0.598 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.724 -7.831 9.537 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.811 3.189 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.164 1.164 7 C -1.163 5.163 8 H 0.149 0.851 9 S 2.811 3.189 10 O -1.015 7.015 11 O -1.028 7.028 12 N -0.809 5.809 13 C 0.035 3.965 14 C -0.196 4.196 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.103 4.103 18 C 0.006 3.994 19 N -0.306 5.306 20 C 0.304 3.696 21 O -0.459 6.459 22 C -0.173 4.173 23 C -0.103 4.103 24 H 0.111 0.889 25 H 0.252 0.748 26 H 0.157 0.843 27 H 0.173 0.827 28 H 0.194 0.806 29 H 0.239 0.761 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.380 -8.419 9.421 18.403 hybrid contribution -0.256 1.103 -1.625 1.981 sum 13.124 -7.317 7.796 16.928 Atomic orbital electron populations 1.69984 1.08935 1.32688 1.40626 1.26042 0.95329 1.05360 0.87331 0.85109 0.78703 0.74035 0.81062 1.17679 1.19139 1.16404 1.30740 1.07215 1.11111 1.67219 0.85064 1.00493 0.72458 0.74236 0.71731 1.93346 1.73808 1.87825 1.46493 1.93335 1.74357 1.88181 1.46961 1.53539 1.53382 1.51400 1.22575 1.17355 0.95762 0.93259 0.90153 1.21862 1.00603 0.98805 0.98361 1.21302 0.96367 0.99275 0.95180 1.21254 1.00131 0.90090 1.00246 1.19820 0.97684 0.98537 0.94221 1.17598 1.01664 0.84503 0.95682 1.43612 1.63901 1.05776 1.17287 1.21651 0.75791 0.80710 0.91422 1.90741 1.50752 1.42126 1.62292 1.21800 1.01727 1.03673 0.90061 1.20538 0.97335 0.86867 1.05545 0.88895 0.74776 0.84280 0.82679 0.80616 0.76100 0.85173 0.86811 0.88522 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.51 13.19 21.45 0.28 -51.23 16 2 C 0.07 3.87 5.46 84.65 0.46 4.34 16 3 Si 0.99 38.86 29.54 68.60 2.03 40.89 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 7 C -1.03 -53.59 7.58 67.73 0.51 -53.07 16 8 H 0.13 6.04 6.90 -2.91 -0.02 6.02 16 9 S 2.71 144.34 4.63 -56.49 -0.26 144.08 16 10 O -1.02 -60.63 17.43 -128.00 -2.23 -62.86 16 11 O -1.04 -62.02 18.02 -128.00 -2.31 -64.32 16 12 N -1.06 -43.24 5.62 -51.03 -0.29 -43.53 16 13 C 0.13 4.84 6.22 38.26 0.24 5.08 16 14 C -0.17 -6.18 8.92 22.39 0.20 -5.98 16 15 C -0.10 -2.56 10.04 22.28 0.22 -2.34 16 16 C -0.10 -1.83 9.69 22.28 0.22 -1.62 16 17 C -0.10 -2.12 5.66 -19.78 -0.11 -2.23 16 18 C 0.10 3.08 6.52 38.21 0.25 3.33 16 19 N -0.66 -19.34 5.31 -303.59 -1.61 -20.96 16 20 C 0.51 14.15 7.72 87.62 0.68 14.83 16 21 O -0.58 -20.15 17.91 -3.10 -0.06 -20.20 16 22 C -0.13 -2.22 6.07 29.74 0.18 -2.03 16 23 C -0.07 -0.84 5.99 29.80 0.18 -0.66 16 24 H 0.30 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.42 14.62 7.66 -96.75 -0.74 13.88 16 26 H 0.14 5.62 4.49 -2.91 -0.01 5.61 16 27 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.40 11.87 7.43 -92.71 -0.69 11.18 16 30 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.13 0.73 8.06 -2.39 -0.02 0.71 16 Total: -1.00 -81.54 296.23 -1.66 -83.20 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.24 Total: 35.28 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 3.03 Total: -40.35 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -1.62 Total: -115.71 kcal Atomic # 8 Polarization: -142.79 SS G_CDS: -4.59 Total: -147.38 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 16 Polarization: 144.34 SS G_CDS: -0.26 Total: 144.08 kcal Total: -81.54 -1.66 -83.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.148 kcal (2) G-P(sol) polarization free energy of solvation -81.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds