Wall clock time and date at job start Tue Mar 31 2020 04:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38670 * 120.42436 * 2 1 4 4 C 1.38629 * 118.42455 * 179.75590 * 3 2 1 5 5 C 1.38231 * 119.15684 * 0.50309 * 4 3 2 6 6 C 1.50699 * 119.61569 * 179.75726 * 5 4 3 7 7 C 1.53003 * 115.54994 * 313.91438 * 6 5 4 8 8 N 1.46503 * 109.47223 * 294.92259 * 7 6 5 9 9 S 1.65600 * 119.99786 * 164.81910 * 8 7 6 10 10 O 1.42101 * 106.39881 * 178.53851 * 9 8 7 11 11 O 1.42101 * 106.40005 * 311.45518 * 9 8 7 12 12 C 1.76199 * 107.22250 * 64.99755 * 9 8 7 13 13 H 1.07996 * 119.99556 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99827 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99518 * 180.02562 * 14 12 9 16 16 Si 1.86801 * 119.99967 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.47092 * 90.00655 * 16 14 12 18 18 H 1.48506 * 109.46606 * 210.00261 * 16 14 12 19 19 H 1.48496 * 109.47062 * 330.00063 * 16 14 12 20 20 C 1.52999 * 117.49867 * 99.58548 * 6 5 4 21 21 C 1.52997 * 117.49811 * 168.24581 * 6 5 4 22 22 N 1.31849 * 120.76537 * 359.48217 * 5 4 3 23 23 C 1.31886 * 121.72676 * 0.27644 * 22 5 4 24 24 H 1.08995 * 109.47168 * 269.98146 * 1 2 3 25 25 H 1.09007 * 109.46751 * 29.98090 * 1 2 3 26 26 H 1.08996 * 109.47703 * 149.97589 * 1 2 3 27 27 H 1.08001 * 120.78962 * 0.03943 * 3 2 1 28 28 H 1.08002 * 120.42108 * 180.27746 * 4 3 2 29 29 H 1.09004 * 109.47034 * 174.92025 * 7 6 5 30 30 H 1.09003 * 109.46938 * 54.92281 * 7 6 5 31 31 H 0.96997 * 119.99494 * 345.08367 * 8 7 6 32 32 H 0.96999 * 119.99406 * 179.97438 * 15 14 12 33 33 H 1.08999 * 117.49731 * 214.99896 * 20 6 5 34 34 H 1.08996 * 117.50143 * 0.02562 * 20 6 5 35 35 H 1.09001 * 117.50135 * 359.97438 * 21 6 5 36 36 H 1.09008 * 117.49926 * 144.97144 * 21 6 5 37 37 H 1.07996 * 119.61795 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 0.0052 5 6 4.2256 -0.0825 -0.0004 6 6 5.7312 -0.1471 -0.0004 7 6 6.4317 0.7858 -0.9903 8 7 6.0997 0.3834 -2.3593 9 16 6.3974 1.4144 -3.6206 10 8 6.0032 0.7285 -4.8010 11 8 5.8663 2.6766 -3.2410 12 6 8.1442 1.6206 -3.7247 13 1 8.7908 1.1083 -3.0277 14 6 8.6854 2.4366 -4.6954 15 7 9.9892 2.5901 -4.7734 16 14 7.5667 3.3231 -5.9005 17 1 7.1932 4.6490 -5.3457 18 1 8.2777 3.5089 -7.1909 19 1 6.3402 2.5161 -6.1228 20 6 6.4270 -0.4095 1.3367 21 6 6.3799 -1.5061 0.2698 22 7 3.5254 -1.1997 -0.0004 23 6 2.2066 -1.1917 -0.0004 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6891 2.1423 0.0006 28 1 4.1736 2.0591 0.0099 29 1 7.5104 0.7255 -0.8454 30 1 6.0992 1.8101 -0.8219 31 1 5.7020 -0.4853 -2.5265 32 1 10.3699 3.1639 -5.4565 33 1 7.3839 0.0825 1.5111 34 1 5.7958 -0.5357 2.2163 35 1 5.7178 -2.3534 0.4480 36 1 7.3057 -1.7358 -0.2579 37 1 1.6671 -2.1273 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:53 Heat of formation + Delta-G solvation = -26.424030 kcal Electronic energy + Delta-G solvation = -21809.761588 eV Core-core repulsion = 18486.497609 eV Total energy + Delta-G solvation = -3323.263979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51006 -37.82741 -35.59001 -34.40030 -33.68977 -33.21709 -32.99652 -31.84910 -27.57748 -26.43568 -25.93264 -23.50691 -22.63986 -22.14919 -19.84892 -19.00917 -17.45467 -17.02123 -16.49740 -16.31883 -15.55835 -15.08236 -14.87644 -14.53420 -14.35777 -13.99589 -13.60272 -13.29331 -13.19037 -13.01704 -12.82023 -12.67522 -12.62050 -12.20891 -11.70097 -11.39400 -11.36870 -11.15438 -10.81101 -10.60469 -10.49746 -10.42157 -10.18895 -9.80554 -9.74314 -9.39407 -9.20191 -9.18781 -8.67518 -8.50545 -6.79678 -5.33179 1.07924 1.30594 2.10188 3.07885 3.18205 3.28024 3.57589 3.92235 3.96300 4.20790 4.42885 4.60429 4.64519 4.71679 4.79816 4.85309 4.93699 5.13244 5.18216 5.35953 5.36946 5.39726 5.52214 5.70005 5.72045 5.73638 5.86463 5.96436 6.03031 6.09429 6.17384 6.25374 6.27111 6.31686 6.62375 6.73731 7.48597 7.78418 8.02180 8.21564 8.71620 10.32686 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.004955 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.305288 B = 5649.503491 C = 6454.216735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.149 4.149 3 C -0.075 4.075 4 C -0.151 4.151 5 C 0.169 3.831 6 C -0.099 4.099 7 C 0.169 3.831 8 N -1.121 6.121 9 S 2.676 3.324 10 O -1.009 7.009 11 O -1.013 7.013 12 C -1.016 5.016 13 H 0.122 0.878 14 C 0.153 3.847 15 N -0.824 5.824 16 Si 0.801 3.199 17 H -0.246 1.246 18 H -0.255 1.255 19 H -0.221 1.221 20 C -0.153 4.153 21 C -0.149 4.149 22 N -0.477 5.477 23 C 0.097 3.903 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.407 0.593 32 H 0.280 0.720 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 -5.141 12.705 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.101 4.101 4 C -0.171 4.171 5 C 0.032 3.968 6 C -0.101 4.101 7 C 0.041 3.959 8 N -0.877 5.877 9 S 2.778 3.222 10 O -1.000 7.000 11 O -1.003 7.003 12 C -1.150 5.150 13 H 0.140 0.860 14 C -0.066 4.066 15 N -0.453 5.453 16 Si 0.621 3.379 17 H -0.170 1.170 18 H -0.179 1.179 19 H -0.143 1.143 20 C -0.191 4.191 21 C -0.186 4.186 22 N -0.185 5.185 23 C -0.060 4.060 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.239 0.761 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.812 -5.292 12.124 18.416 hybrid contribution -0.226 0.822 -0.513 0.995 sum -13.038 -4.470 11.612 18.022 Atomic orbital electron populations 1.20685 0.90411 1.03072 1.02274 1.20901 0.97463 0.94372 1.02403 1.21486 0.93967 0.98206 0.96466 1.21988 0.95066 0.99523 1.00524 1.20091 0.93801 0.88386 0.94546 1.20246 0.88696 1.01502 0.99700 1.20599 0.98421 0.96951 0.79893 1.55415 1.80260 1.32949 1.19086 1.01296 0.77389 0.72364 0.71163 1.93473 1.85688 1.74882 1.45930 1.93392 1.81761 1.42210 1.82890 1.30473 1.16352 1.40951 1.27226 0.86045 1.24422 0.95153 0.92339 0.94690 1.69991 1.10801 1.32769 1.31715 0.87867 0.83678 0.83766 0.82555 1.16985 1.17898 1.14271 1.23056 1.01725 1.02975 0.91367 1.23032 1.02282 0.91959 1.01329 1.67349 1.07972 1.31066 1.12126 1.22571 0.89648 0.97326 0.96473 0.91165 0.91394 0.91300 0.84838 0.84251 0.90813 0.90140 0.76134 0.90927 0.87692 0.88794 0.87521 0.87989 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.04 36.00 0.36 -0.46 16 2 C -0.15 -1.66 5.90 -104.48 -0.62 -2.27 16 3 C -0.08 -0.91 9.86 -39.28 -0.39 -1.30 16 4 C -0.15 -2.11 9.39 -39.44 -0.37 -2.48 16 5 C 0.17 2.47 6.12 -82.59 -0.51 1.97 16 6 C -0.10 -1.40 1.93 -155.66 -0.30 -1.70 16 7 C 0.17 2.82 5.79 -4.04 -0.02 2.80 16 8 N -1.12 -22.06 5.90 -10.61 -0.06 -22.12 16 9 S 2.68 67.46 4.24 -107.50 -0.46 67.00 16 10 O -1.01 -27.77 16.02 -57.17 -0.92 -28.69 16 11 O -1.01 -26.87 16.30 -57.17 -0.93 -27.80 16 12 C -1.02 -28.36 10.26 30.60 0.31 -28.05 16 13 H 0.12 3.39 8.06 -52.49 -0.42 2.96 16 14 C 0.15 4.43 5.47 -17.82 -0.10 4.33 16 15 N -0.82 -23.83 13.96 55.43 0.77 -23.06 16 16 Si 0.80 20.77 26.54 -169.99 -4.51 16.26 16 17 H -0.25 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.22 -5.86 5.61 56.52 0.32 -5.54 16 20 C -0.15 -1.74 9.93 -26.69 -0.26 -2.01 16 21 C -0.15 -1.87 9.74 -26.69 -0.26 -2.13 16 22 N -0.48 -6.81 9.36 -9.47 -0.09 -6.90 16 23 C 0.10 1.17 10.86 -17.55 -0.19 0.98 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.14 1.87 7.15 -52.49 -0.38 1.49 16 29 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 30 H 0.08 1.35 6.73 -51.93 -0.35 1.00 16 31 H 0.41 7.40 8.65 -34.48 -0.30 7.10 16 32 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.34 7.59 -51.93 -0.39 0.94 16 36 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -33.91 326.86 -8.46 -42.38 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.86 Total: 8.32 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -2.34 Total: -30.32 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.62 Total: -52.07 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -1.85 Total: -56.49 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.51 Total: 16.26 kcal Atomic # 16 Polarization: 67.46 SS G_CDS: -0.46 Total: 67.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.91 -8.46 -42.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.954 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds