Wall clock time and date at job start Tue Mar 31 2020 04:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38670 * 120.42436 * 2 1 4 4 C 1.38629 * 118.42455 * 179.75590 * 3 2 1 5 5 C 1.38231 * 119.15684 * 0.50309 * 4 3 2 6 6 C 1.50699 * 119.61569 * 179.75726 * 5 4 3 7 7 C 1.53003 * 115.54994 * 313.91438 * 6 5 4 8 8 N 1.46503 * 109.47223 * 294.92259 * 7 6 5 9 9 S 1.65600 * 119.99786 * 164.81910 * 8 7 6 10 10 O 1.42101 * 106.39881 * 178.53851 * 9 8 7 11 11 O 1.42101 * 106.40005 * 311.45518 * 9 8 7 12 12 C 1.76199 * 107.22250 * 64.99755 * 9 8 7 13 13 H 1.07996 * 119.99556 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99827 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99518 * 180.02562 * 14 12 9 16 16 Si 1.86801 * 119.99967 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.47092 * 90.00655 * 16 14 12 18 18 H 1.48506 * 109.46606 * 210.00261 * 16 14 12 19 19 H 1.48496 * 109.47062 * 330.00063 * 16 14 12 20 20 C 1.52999 * 117.49867 * 99.58548 * 6 5 4 21 21 C 1.52997 * 117.49811 * 168.24581 * 6 5 4 22 22 N 1.31849 * 120.76537 * 359.48217 * 5 4 3 23 23 C 1.31886 * 121.72676 * 0.27644 * 22 5 4 24 24 H 1.08995 * 109.47168 * 269.98146 * 1 2 3 25 25 H 1.09007 * 109.46751 * 29.98090 * 1 2 3 26 26 H 1.08996 * 109.47703 * 149.97589 * 1 2 3 27 27 H 1.08001 * 120.78962 * 0.03943 * 3 2 1 28 28 H 1.08002 * 120.42108 * 180.27746 * 4 3 2 29 29 H 1.09004 * 109.47034 * 174.92025 * 7 6 5 30 30 H 1.09003 * 109.46938 * 54.92281 * 7 6 5 31 31 H 0.96997 * 119.99494 * 345.08367 * 8 7 6 32 32 H 0.96999 * 119.99406 * 179.97438 * 15 14 12 33 33 H 1.08999 * 117.49731 * 214.99896 * 20 6 5 34 34 H 1.08996 * 117.50143 * 0.02562 * 20 6 5 35 35 H 1.09001 * 117.50135 * 359.97438 * 21 6 5 36 36 H 1.09008 * 117.49926 * 144.97144 * 21 6 5 37 37 H 1.07996 * 119.61795 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 0.0052 5 6 4.2256 -0.0825 -0.0004 6 6 5.7312 -0.1471 -0.0004 7 6 6.4317 0.7858 -0.9903 8 7 6.0997 0.3834 -2.3593 9 16 6.3974 1.4144 -3.6206 10 8 6.0032 0.7285 -4.8010 11 8 5.8663 2.6766 -3.2410 12 6 8.1442 1.6206 -3.7247 13 1 8.7908 1.1083 -3.0277 14 6 8.6854 2.4366 -4.6954 15 7 9.9892 2.5901 -4.7734 16 14 7.5667 3.3231 -5.9005 17 1 7.1932 4.6490 -5.3457 18 1 8.2777 3.5089 -7.1909 19 1 6.3402 2.5161 -6.1228 20 6 6.4270 -0.4095 1.3367 21 6 6.3799 -1.5061 0.2698 22 7 3.5254 -1.1997 -0.0004 23 6 2.2066 -1.1917 -0.0004 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6891 2.1423 0.0006 28 1 4.1736 2.0591 0.0099 29 1 7.5104 0.7255 -0.8454 30 1 6.0992 1.8101 -0.8219 31 1 5.7020 -0.4853 -2.5265 32 1 10.3699 3.1639 -5.4565 33 1 7.3839 0.0825 1.5111 34 1 5.7958 -0.5357 2.2163 35 1 5.7178 -2.3534 0.4480 36 1 7.3057 -1.7358 -0.2579 37 1 1.6671 -2.1273 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:52 Heat of formation + Delta-G solvation = -51.196229 kcal Electronic energy + Delta-G solvation = -21810.835791 eV Core-core repulsion = 18486.497609 eV Total energy + Delta-G solvation = -3324.338182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47000 -38.88741 -37.68382 -36.50892 -35.24071 -35.03067 -34.14972 -32.78718 -28.58578 -28.41904 -27.23632 -24.49526 -23.55849 -23.09702 -21.19847 -20.74255 -19.45703 -18.65451 -18.05216 -17.30846 -17.11693 -16.70308 -16.01056 -15.82446 -15.61763 -15.33457 -15.20996 -14.99006 -14.74856 -14.24146 -14.00396 -13.65814 -13.53938 -13.43182 -13.32634 -13.08659 -12.80109 -12.72463 -12.58273 -12.30562 -12.20791 -11.88897 -11.41285 -11.34118 -11.30294 -11.15959 -10.70369 -10.39171 -10.20483 -9.55676 -8.97282 -7.53118 0.12989 0.14164 0.35980 1.03948 1.13138 1.20715 1.88351 2.39949 2.46083 2.73140 2.94923 3.27822 3.32166 3.64698 3.68595 3.96119 3.98403 4.09320 4.11042 4.20518 4.25759 4.46717 4.51048 4.66280 4.79983 4.82038 4.84591 4.88293 4.98533 5.03929 5.10935 5.20149 5.28651 5.34081 5.38317 5.38834 5.82638 6.00866 6.22162 6.53043 7.05754 8.20236 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.004955 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.305288 B = 5649.503491 C = 6454.216735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.146 4.146 3 C -0.085 4.085 4 C -0.174 4.174 5 C 0.150 3.850 6 C -0.113 4.113 7 C 0.161 3.839 8 N -1.108 6.108 9 S 2.698 3.302 10 O -1.034 7.034 11 O -1.027 7.027 12 C -1.036 5.036 13 H 0.110 0.890 14 C 0.110 3.890 15 N -0.851 5.851 16 Si 0.822 3.178 17 H -0.236 1.236 18 H -0.219 1.219 19 H -0.233 1.233 20 C -0.131 4.131 21 C -0.147 4.147 22 N -0.495 5.495 23 C 0.086 3.914 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.415 0.585 32 H 0.291 0.709 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 -5.398 13.407 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C -0.110 4.110 4 C -0.194 4.194 5 C 0.013 3.987 6 C -0.115 4.115 7 C 0.035 3.965 8 N -0.867 5.867 9 S 2.798 3.202 10 O -1.024 7.024 11 O -1.017 7.017 12 C -1.169 5.169 13 H 0.128 0.872 14 C -0.107 4.107 15 N -0.482 5.482 16 Si 0.639 3.361 17 H -0.159 1.159 18 H -0.141 1.141 19 H -0.156 1.156 20 C -0.169 4.169 21 C -0.185 4.185 22 N -0.204 5.204 23 C -0.072 4.072 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.172 0.828 28 H 0.153 0.847 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.328 -5.540 12.816 20.006 hybrid contribution 0.205 0.838 -0.633 1.070 sum -14.124 -4.702 12.184 19.236 Atomic orbital electron populations 1.20759 0.87773 1.04045 1.03594 1.21285 0.99328 0.93586 1.00544 1.21826 0.93479 0.99713 0.96023 1.22122 0.96187 0.99310 1.01751 1.20144 0.93974 0.88798 0.95787 1.20103 0.88835 1.01896 1.00709 1.20808 0.99193 0.97677 0.78820 1.54970 1.79861 1.32602 1.19287 1.00466 0.75911 0.72377 0.71423 1.93431 1.85542 1.75354 1.48082 1.93366 1.81413 1.43576 1.83311 1.30936 1.18295 1.40723 1.26948 0.87157 1.25121 0.96309 0.93126 0.96110 1.70006 1.11649 1.33662 1.32834 0.87532 0.82399 0.83175 0.82969 1.15936 1.14116 1.15583 1.23157 1.01938 1.01290 0.90508 1.23047 1.02021 0.91556 1.01833 1.67339 1.09130 1.31054 1.12852 1.23114 0.89234 0.98929 0.95892 0.89518 0.90768 0.90012 0.82848 0.84720 0.90263 0.90542 0.75099 0.89800 0.86292 0.87719 0.87490 0.87918 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.04 71.23 0.72 -0.58 16 2 C -0.15 -2.93 5.90 -19.77 -0.12 -3.05 16 3 C -0.08 -1.94 9.86 22.47 0.22 -1.72 16 4 C -0.17 -4.79 9.39 22.36 0.21 -4.58 16 5 C 0.15 4.29 6.12 42.55 0.26 4.55 16 6 C -0.11 -3.10 1.93 -52.93 -0.10 -3.21 16 7 C 0.16 5.37 5.79 86.38 0.50 5.87 16 8 N -1.11 -43.52 5.90 -187.47 -1.11 -44.62 16 9 S 2.70 136.20 4.24 -56.49 -0.24 135.96 16 10 O -1.03 -56.87 16.02 -128.00 -2.05 -58.92 16 11 O -1.03 -54.39 16.30 -128.00 -2.09 -56.48 16 12 C -1.04 -58.45 10.26 67.73 0.69 -57.76 16 13 H 0.11 6.28 8.06 -2.91 -0.02 6.26 16 14 C 0.11 6.37 5.47 84.65 0.46 6.83 16 15 N -0.85 -49.27 13.96 21.45 0.30 -48.97 16 16 Si 0.82 41.39 26.54 68.60 1.82 43.21 16 17 H -0.24 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.22 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.23 -12.20 5.61 99.48 0.56 -11.64 16 20 C -0.13 -2.77 9.93 30.62 0.30 -2.47 16 21 C -0.15 -3.55 9.74 30.62 0.30 -3.25 16 22 N -0.50 -13.61 9.36 -183.88 -1.72 -15.33 16 23 C 0.09 1.91 10.86 84.67 0.92 2.83 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.85 8.10 -2.38 -0.02 0.83 16 26 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.13 3.67 7.15 -2.91 -0.02 3.65 16 29 H 0.08 2.52 8.09 -2.38 -0.02 2.50 16 30 H 0.08 2.60 6.73 -2.39 -0.02 2.58 16 31 H 0.42 15.04 8.65 -96.74 -0.84 14.20 16 32 H 0.29 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.11 2.57 7.59 -2.39 -0.02 2.55 16 36 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -71.78 326.86 -0.61 -72.39 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.10 Total: 29.29 kcal Atomic # 6 Polarization: -60.89 SS G_CDS: 4.37 Total: -56.52 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -2.53 Total: -108.92 kcal Atomic # 8 Polarization: -111.26 SS G_CDS: -4.14 Total: -115.40 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.82 Total: 43.21 kcal Atomic # 16 Polarization: 136.20 SS G_CDS: -0.24 Total: 135.96 kcal Total: -71.78 -0.61 -72.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.196 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds