Wall clock time and date at job start Tue Mar 31 2020 05:19:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.47135 * 2 1
4 4 C 1.50702 * 109.46876 * 240.00143 * 2 1 3
5 5 O 1.21286 * 119.99908 * 239.99880 * 4 2 1
6 6 N 1.34769 * 120.00285 * 59.99974 * 4 2 1
7 7 C 1.46498 * 120.00405 * 179.97438 * 6 4 2
8 8 H 1.09008 * 110.63704 * 36.68824 * 7 6 4
9 9 C 1.54323 * 110.72007 * 273.55014 * 7 6 4
10 10 N 1.47025 * 107.27145 * 263.82508 * 9 7 6
11 11 C 1.36932 * 125.64998 * 181.02568 * 10 9 7
12 12 H 1.08009 * 120.00062 * 14.87046 * 11 10 9
13 13 C 1.38810 * 119.99977 * 194.87317 * 11 10 9
14 14 N 1.31620 * 119.99861 * 203.65520 * 13 11 10
15 15 Si 1.86801 * 120.00115 * 23.65772 * 13 11 10
16 16 H 1.48501 * 109.46741 * 269.99856 * 15 13 11
17 17 H 1.48501 * 109.46955 * 29.99570 * 15 13 11
18 18 H 1.48498 * 109.47173 * 149.99838 * 15 13 11
19 19 C 1.47423 * 108.69906 * 1.28799 * 10 9 7
20 20 C 1.55125 * 104.72655 * 335.55056 * 19 10 9
21 21 H 1.08999 * 111.22566 * 279.17924 * 20 19 10
22 22 O 1.42898 * 110.90816 * 155.27511 * 20 19 10
23 23 C 1.53004 * 109.47305 * 120.00035 * 2 1 3
24 24 F 1.39895 * 109.47233 * 179.97438 * 23 2 1
25 25 F 1.39896 * 109.47204 * 300.00372 * 23 2 1
26 26 F 1.39904 * 109.46823 * 59.99682 * 23 2 1
27 27 H 1.08999 * 109.47135 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.46657 * 299.99847 * 1 2 3
29 29 H 1.09003 * 109.46805 * 59.99503 * 1 2 3
30 30 H 0.97006 * 119.99935 * 0.02562 * 6 4 2
31 31 H 1.09003 * 109.88183 * 144.40776 * 9 7 6
32 32 H 1.09001 * 110.01478 * 23.31950 * 9 7 6
33 33 H 0.96998 * 120.00361 * 354.69230 * 14 13 11
34 34 H 1.09002 * 110.36805 * 94.48322 * 19 10 9
35 35 H 1.09002 * 110.36520 * 216.80680 * 19 10 9
36 36 H 0.96699 * 113.99917 * 67.97658 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 8 2.7296 -1.6965 -1.1193
6 7 1.7067 -0.2500 -2.4546
7 6 2.1954 -0.9402 -3.6508
8 1 2.2119 -2.0186 -3.4923
9 6 3.5957 -0.4248 -4.0447
10 7 3.4073 0.6044 -5.0777
11 6 4.4077 1.2960 -5.7069
12 1 5.4283 0.9485 -5.6416
13 6 4.1102 2.4438 -6.4287
14 7 4.9171 2.8458 -7.3876
15 14 2.5646 3.4178 -6.0390
16 1 1.4379 2.9080 -6.8611
17 1 2.2345 3.2671 -4.5990
18 1 2.7928 4.8524 -6.3470
19 6 1.9628 0.7728 -5.3192
20 6 1.3307 -0.5761 -4.8865
21 1 1.4315 -1.3281 -5.6691
22 8 -0.0395 -0.4029 -4.5198
23 6 2.0401 -0.7213 1.2493
24 9 3.4390 -0.7218 1.2489
25 9 1.5737 -0.0619 2.3915
26 9 1.5737 -2.0403 1.2492
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.1493 0.5390 -2.5436
31 1 4.1939 -1.2445 -4.4428
32 1 4.0919 0.0081 -3.1761
33 1 5.7573 2.3855 -7.5393
34 1 1.5698 1.5899 -4.7142
35 1 1.7740 0.9578 -6.3767
36 1 -0.6188 -0.1743 -5.2595
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001220164756.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:19:25
Heat of formation + Delta-G solvation = -210.830582 kcal
Electronic energy + Delta-G solvation = -25415.077836 eV
Core-core repulsion = 21099.207778 eV
Total energy + Delta-G solvation = -4315.870058 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 296.113 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.14633 -47.67345 -47.53682 -40.15868 -38.30041 -35.47860 -34.44022 -33.81782
-31.94490 -28.86738 -27.83449 -26.63493 -24.39352 -23.41281 -21.16141 -20.80072
-19.90923 -18.86488 -18.49891 -17.84454 -17.47507 -17.32544 -16.73964 -15.92584
-15.32534 -15.15297 -14.62231 -14.37357 -14.11759 -14.05879 -13.99436 -13.76461
-13.75503 -13.69490 -13.38574 -13.09391 -12.88514 -12.70323 -12.51163 -12.27368
-11.87135 -11.63028 -11.50136 -11.31021 -10.94251 -10.47419 -10.04768 -9.94559
-9.53837 -9.35478 -8.98881 -8.62152 -7.21631 -6.41467 -3.33516 2.44828
2.47840 3.00901 3.26789 3.39242 3.54985 3.56898 3.90720 3.97678
4.16095 4.47416 4.58745 4.62288 4.76666 4.83187 4.98922 5.11010
5.19349 5.30934 5.33062 5.42338 5.67840 5.75105 5.79767 6.11248
6.29263 6.36553 6.45896 6.70785 7.43609 7.57218 7.65699 8.11378
8.24342 8.92820 9.45507 10.11664 11.05695
Molecular weight = 296.11amu
Principal moments of inertia in cm(-1)
A = 0.022346 B = 0.004578 C = 0.004439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.695289 B = 6114.200892 C = 6306.006132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.164 4.164
3 H 0.139 0.861
4 C 0.523 3.477
5 O -0.526 6.526
6 N -0.692 5.692
7 C 0.145 3.855
8 H 0.100 0.900
9 C 0.124 3.876
10 N -0.602 5.602
11 C -0.329 4.329
12 H 0.077 0.923
13 C -0.020 4.020
14 N -0.919 5.919
15 Si 1.068 2.932
16 H -0.295 1.295
17 H -0.288 1.288
18 H -0.297 1.297
19 C 0.077 3.923
20 C 0.082 3.918
21 H 0.084 0.916
22 O -0.562 6.562
23 C 0.474 3.526
24 F -0.172 7.172
25 F -0.183 7.183
26 F -0.172 7.172
27 H 0.075 0.925
28 H 0.080 0.920
29 H 0.087 0.913
30 H 0.407 0.593
31 H 0.044 0.956
32 H 0.039 0.961
33 H 0.264 0.736
34 H 0.039 0.961
35 H 0.065 0.935
36 H 0.381 0.619
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.777 -5.381 13.417 19.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.187 4.187
3 H 0.157 0.843
4 C 0.306 3.694
5 O -0.403 6.403
6 N -0.343 5.343
7 C 0.040 3.960
8 H 0.118 0.882
9 C -0.003 4.003
10 N -0.331 5.331
11 C -0.456 4.456
12 H 0.095 0.905
13 C -0.220 4.220
14 N -0.560 5.560
15 Si 0.900 3.100
16 H -0.223 1.223
17 H -0.215 1.215
18 H -0.225 1.225
19 C -0.049 4.049
20 C 0.021 3.979
21 H 0.101 0.899
22 O -0.367 6.367
23 C 0.419 3.581
24 F -0.153 7.153
25 F -0.165 7.165
26 F -0.154 7.154
27 H 0.094 0.906
28 H 0.099 0.901
29 H 0.106 0.894
30 H 0.242 0.758
31 H 0.062 0.938
32 H 0.057 0.943
33 H 0.075 0.925
34 H 0.056 0.944
35 H 0.083 0.917
36 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -12.825 -4.926 13.576 19.315
hybrid contribution 0.674 -0.732 0.087 0.999
sum -12.151 -5.658 13.663 19.140
Atomic orbital electron populations
1.21837 0.89208 1.04714 1.04875 1.22644 1.01425 1.03188 0.91419
0.84280 1.19636 0.80798 0.84729 0.84219 1.90803 1.37280 1.25776
1.86391 1.45531 1.52577 1.31834 1.04356 1.22080 0.93815 0.97393
0.82704 0.88208 1.21817 0.93057 0.92862 0.92521 1.44647 1.00508
1.44759 1.43224 1.20062 0.89013 1.06606 1.29947 0.90504 1.25931
1.05558 0.95588 0.94963 1.70891 1.12357 1.46935 1.25771 0.83792
0.74726 0.76220 0.75252 1.22289 1.21527 1.22518 1.22731 0.86717
0.95176 1.00299 1.23398 0.80747 0.98062 0.95681 0.89862 1.86372
1.18172 1.93152 1.39013 1.19752 0.76037 0.77822 0.84455 1.93228
1.29137 1.96331 1.96638 1.93172 1.88603 1.80898 1.53815 1.93198
1.88303 1.37220 1.96662 0.90557 0.90076 0.89447 0.75795 0.93817
0.94300 0.92539 0.94374 0.91743 0.77129
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 8.85 37.16 0.33 -0.87 16
2 C -0.16 -1.79 2.71 -91.77 -0.25 -2.03 16
3 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16
4 C 0.52 7.63 6.92 -10.99 -0.08 7.56 16
5 O -0.53 -9.55 14.56 5.55 0.08 -9.47 16
6 N -0.69 -9.96 4.67 -52.03 -0.24 -10.21 16
7 C 0.15 2.35 3.14 -66.10 -0.21 2.14 16
8 H 0.10 1.59 7.69 -51.92 -0.40 1.19 16
9 C 0.12 2.48 6.98 -3.06 -0.02 2.46 16
10 N -0.60 -13.95 3.25 -169.93 -0.55 -14.50 16
11 C -0.33 -9.11 10.44 -15.06 -0.16 -9.27 16
12 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16
13 C -0.02 -0.55 5.43 -17.43 -0.09 -0.65 16
14 N -0.92 -27.98 13.70 55.49 0.76 -27.22 16
15 Si 1.07 25.22 24.69 -169.99 -4.20 21.02 16
16 H -0.29 -6.45 6.66 56.52 0.38 -6.07 16
17 H -0.29 -6.36 6.22 56.52 0.35 -6.01 16
18 H -0.30 -7.22 7.11 56.52 0.40 -6.81 16
19 C 0.08 1.49 4.41 -2.41 -0.01 1.48 16
20 C 0.08 1.23 4.23 -24.46 -0.10 1.12 16
21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
22 O -0.56 -6.84 12.63 -35.23 -0.45 -7.28 16
23 C 0.47 5.96 2.42 37.16 0.09 6.05 16
24 F -0.17 -2.56 16.40 2.25 0.04 -2.52 16
25 F -0.18 -2.05 16.80 2.25 0.04 -2.01 16
26 F -0.17 -2.40 15.88 2.25 0.04 -2.36 16
27 H 0.08 0.66 7.80 -51.93 -0.41 0.26 16
28 H 0.08 0.52 7.80 -51.93 -0.41 0.12 16
29 H 0.09 0.61 7.56 -51.93 -0.39 0.22 16
30 H 0.41 5.23 7.62 -40.82 -0.31 4.92 16
31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
32 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16
33 H 0.26 7.99 8.73 -40.82 -0.36 7.64 16
34 H 0.04 0.75 5.50 -51.93 -0.29 0.47 16
35 H 0.06 1.32 6.38 -51.93 -0.33 0.99 16
36 H 0.38 3.13 9.12 45.56 0.42 3.55 16
LS Contribution 306.83 15.07 4.62 4.62
Total: -1.00 -33.40 306.83 -3.81 -37.21
By element:
Atomic # 1 Polarization: 8.20 SS G_CDS: -3.45 Total: 4.74 kcal
Atomic # 6 Polarization: 8.48 SS G_CDS: -0.50 Total: 7.98 kcal
Atomic # 7 Polarization: -51.90 SS G_CDS: -0.03 Total: -51.93 kcal
Atomic # 8 Polarization: -16.39 SS G_CDS: -0.36 Total: -16.76 kcal
Atomic # 9 Polarization: -7.01 SS G_CDS: 0.11 Total: -6.89 kcal
Atomic # 14 Polarization: 25.22 SS G_CDS: -4.20 Total: 21.02 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -33.40 -3.81 -37.21 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001220164756.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -173.620 kcal
(2) G-P(sol) polarization free energy of solvation -33.397 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal
(6) G-S(sol) free energy of system = (1) + (5) -210.831 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds