Wall clock time and date at job start Tue Mar 31 2020 05:19:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.47135 * 2 1
4 4 C 1.50702 * 109.46876 * 240.00143 * 2 1 3
5 5 O 1.21286 * 119.99908 * 239.99880 * 4 2 1
6 6 N 1.34769 * 120.00285 * 59.99974 * 4 2 1
7 7 C 1.46498 * 120.00405 * 179.97438 * 6 4 2
8 8 H 1.09008 * 110.63704 * 36.68824 * 7 6 4
9 9 C 1.54323 * 110.72007 * 273.55014 * 7 6 4
10 10 N 1.47025 * 107.27145 * 263.82508 * 9 7 6
11 11 C 1.36932 * 125.64998 * 181.02568 * 10 9 7
12 12 H 1.08009 * 120.00062 * 14.87046 * 11 10 9
13 13 C 1.38810 * 119.99977 * 194.87317 * 11 10 9
14 14 N 1.31620 * 119.99861 * 203.65520 * 13 11 10
15 15 Si 1.86801 * 120.00115 * 23.65772 * 13 11 10
16 16 H 1.48501 * 109.46741 * 269.99856 * 15 13 11
17 17 H 1.48501 * 109.46955 * 29.99570 * 15 13 11
18 18 H 1.48498 * 109.47173 * 149.99838 * 15 13 11
19 19 C 1.47423 * 108.69906 * 1.28799 * 10 9 7
20 20 C 1.55125 * 104.72655 * 335.55056 * 19 10 9
21 21 H 1.08999 * 111.22566 * 279.17924 * 20 19 10
22 22 O 1.42898 * 110.90816 * 155.27511 * 20 19 10
23 23 C 1.53004 * 109.47305 * 120.00035 * 2 1 3
24 24 F 1.39895 * 109.47233 * 179.97438 * 23 2 1
25 25 F 1.39896 * 109.47204 * 300.00372 * 23 2 1
26 26 F 1.39904 * 109.46823 * 59.99682 * 23 2 1
27 27 H 1.08999 * 109.47135 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.46657 * 299.99847 * 1 2 3
29 29 H 1.09003 * 109.46805 * 59.99503 * 1 2 3
30 30 H 0.97006 * 119.99935 * 0.02562 * 6 4 2
31 31 H 1.09003 * 109.88183 * 144.40776 * 9 7 6
32 32 H 1.09001 * 110.01478 * 23.31950 * 9 7 6
33 33 H 0.96998 * 120.00361 * 354.69230 * 14 13 11
34 34 H 1.09002 * 110.36805 * 94.48322 * 19 10 9
35 35 H 1.09002 * 110.36520 * 216.80680 * 19 10 9
36 36 H 0.96699 * 113.99917 * 67.97658 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 8 2.7296 -1.6965 -1.1193
6 7 1.7067 -0.2500 -2.4546
7 6 2.1954 -0.9402 -3.6508
8 1 2.2119 -2.0186 -3.4923
9 6 3.5957 -0.4248 -4.0447
10 7 3.4073 0.6044 -5.0777
11 6 4.4077 1.2960 -5.7069
12 1 5.4283 0.9485 -5.6416
13 6 4.1102 2.4438 -6.4287
14 7 4.9171 2.8458 -7.3876
15 14 2.5646 3.4178 -6.0390
16 1 1.4379 2.9080 -6.8611
17 1 2.2345 3.2671 -4.5990
18 1 2.7928 4.8524 -6.3470
19 6 1.9628 0.7728 -5.3192
20 6 1.3307 -0.5761 -4.8865
21 1 1.4315 -1.3281 -5.6691
22 8 -0.0395 -0.4029 -4.5198
23 6 2.0401 -0.7213 1.2493
24 9 3.4390 -0.7218 1.2489
25 9 1.5737 -0.0619 2.3915
26 9 1.5737 -2.0403 1.2492
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.1493 0.5390 -2.5436
31 1 4.1939 -1.2445 -4.4428
32 1 4.0919 0.0081 -3.1761
33 1 5.7573 2.3855 -7.5393
34 1 1.5698 1.5899 -4.7142
35 1 1.7740 0.9578 -6.3767
36 1 -0.6188 -0.1743 -5.2595
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001220164756.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:19:25
Heat of formation + Delta-G solvation = -238.532176 kcal
Electronic energy + Delta-G solvation = -25416.279067 eV
Core-core repulsion = 21099.207778 eV
Total energy + Delta-G solvation = -4317.071289 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 296.113 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-51.13823 -48.63956 -48.58783 -41.38103 -39.62787 -36.77225 -35.61502 -35.04770
-33.79205 -30.44496 -29.33230 -27.42031 -26.04532 -24.61477 -22.70929 -22.02114
-21.29648 -19.91072 -19.62398 -19.48085 -18.71159 -18.45063 -17.84565 -17.19755
-16.73691 -16.35478 -15.75525 -15.69621 -15.57719 -15.31394 -15.14184 -14.99681
-14.78966 -14.72638 -14.67492 -14.43307 -14.11200 -13.98290 -13.60619 -13.39436
-13.08492 -13.04591 -12.88831 -12.57332 -12.41153 -11.89916 -11.63100 -11.46307
-11.12377 -10.93904 -10.62236 -10.25416 -9.20289 -8.64972 -5.50503 1.36720
1.39120 1.47531 1.55236 1.71200 1.96574 2.52782 2.63322 2.82190
2.99102 3.09475 3.12693 3.39233 3.58628 3.63775 3.71855 3.81879
3.98898 4.15432 4.35515 4.46502 4.65707 4.67879 4.70449 4.80350
4.83358 4.95546 5.12547 5.35720 5.54148 6.06737 6.33943 6.77882
6.84348 7.02613 7.40336 8.06040 8.81934
Molecular weight = 296.11amu
Principal moments of inertia in cm(-1)
A = 0.022346 B = 0.004578 C = 0.004439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.695289 B = 6114.200892 C = 6306.006132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.155 4.155
3 H 0.165 0.835
4 C 0.519 3.481
5 O -0.567 6.567
6 N -0.686 5.686
7 C 0.154 3.846
8 H 0.106 0.894
9 C 0.124 3.876
10 N -0.620 5.620
11 C -0.323 4.323
12 H 0.035 0.965
13 C -0.075 4.075
14 N -0.955 5.955
15 Si 1.110 2.890
16 H -0.261 1.261
17 H -0.261 1.261
18 H -0.309 1.309
19 C 0.069 3.931
20 C 0.108 3.892
21 H 0.098 0.902
22 O -0.553 6.553
23 C 0.469 3.531
24 F -0.190 7.190
25 F -0.174 7.174
26 F -0.183 7.183
27 H 0.068 0.932
28 H 0.102 0.898
29 H 0.104 0.896
30 H 0.417 0.583
31 H 0.034 0.966
32 H 0.020 0.980
33 H 0.247 0.753
34 H 0.049 0.951
35 H 0.057 0.943
36 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.438 -5.026 14.517 22.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.177 4.177
3 H 0.183 0.817
4 C 0.305 3.695
5 O -0.446 6.446
6 N -0.337 5.337
7 C 0.048 3.952
8 H 0.123 0.877
9 C -0.003 4.003
10 N -0.349 5.349
11 C -0.452 4.452
12 H 0.053 0.947
13 C -0.269 4.269
14 N -0.598 5.598
15 Si 0.934 3.066
16 H -0.187 1.187
17 H -0.186 1.186
18 H -0.238 1.238
19 C -0.056 4.056
20 C 0.047 3.953
21 H 0.115 0.885
22 O -0.361 6.361
23 C 0.414 3.586
24 F -0.172 7.172
25 F -0.155 7.155
26 F -0.164 7.164
27 H 0.087 0.913
28 H 0.120 0.880
29 H 0.123 0.877
30 H 0.255 0.745
31 H 0.052 0.948
32 H 0.038 0.962
33 H 0.056 0.944
34 H 0.067 0.933
35 H 0.075 0.925
36 H 0.255 0.745
Dipole moment (debyes) X Y Z Total
from point charges -16.544 -4.596 14.691 22.597
hybrid contribution 1.895 -0.918 -0.206 2.116
sum -14.649 -5.514 14.485 21.326
Atomic orbital electron populations
1.21919 0.86575 1.04906 1.06812 1.22707 1.03371 1.03355 0.88282
0.81743 1.20258 0.79855 0.84250 0.85168 1.90791 1.39039 1.27745
1.87026 1.45447 1.52373 1.32040 1.03807 1.21840 0.91720 0.97632
0.84047 0.87652 1.21850 0.95815 0.91629 0.90993 1.44619 1.01627
1.44656 1.43956 1.19894 0.88793 1.06858 1.29639 0.94661 1.27348
1.08539 0.96625 0.94375 1.71026 1.12637 1.47873 1.28235 0.83310
0.72289 0.73878 0.77082 1.18665 1.18617 1.23817 1.22938 0.84423
0.98122 1.00113 1.22987 0.81936 0.95539 0.94816 0.88477 1.86352
1.16482 1.92988 1.40243 1.20071 0.75256 0.77685 0.85572 1.93193
1.30805 1.96397 1.96786 1.93189 1.88333 1.80549 1.53426 1.93176
1.88296 1.38198 1.96775 0.91258 0.87964 0.87685 0.74510 0.94842
0.96193 0.94375 0.93340 0.92532 0.74511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.76 8.85 71.98 0.64 -1.12 16
2 C -0.15 -2.92 2.71 -11.54 -0.03 -2.95 16
3 H 0.17 2.27 8.14 -2.39 -0.02 2.25 16
4 C 0.52 14.07 6.92 87.66 0.61 14.68 16
5 O -0.57 -20.16 14.56 -3.05 -0.04 -20.21 16
6 N -0.69 -17.67 4.67 -436.91 -2.04 -19.71 16
7 C 0.15 4.61 3.14 46.18 0.14 4.76 16
8 H 0.11 3.14 7.69 -2.38 -0.02 3.12 16
9 C 0.12 4.91 6.98 86.73 0.61 5.52 16
10 N -0.62 -28.35 3.25 -691.54 -2.25 -30.59 16
11 C -0.32 -18.36 10.44 84.03 0.88 -17.49 16
12 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16
13 C -0.08 -4.31 5.43 84.86 0.46 -3.85 16
14 N -0.95 -59.93 13.70 21.65 0.30 -59.63 16
15 Si 1.11 49.32 24.69 68.60 1.69 51.01 16
16 H -0.26 -10.15 6.66 99.48 0.66 -9.49 16
17 H -0.26 -10.30 6.22 99.48 0.62 -9.68 16
18 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16
19 C 0.07 2.45 4.41 86.93 0.38 2.84 16
20 C 0.11 2.85 4.23 32.06 0.14 2.98 16
21 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16
22 O -0.55 -10.49 12.63 -148.98 -1.88 -12.37 16
23 C 0.47 10.99 2.42 71.98 0.17 11.16 16
24 F -0.19 -5.55 16.40 44.97 0.74 -4.81 16
25 F -0.17 -3.48 16.80 44.97 0.76 -2.72 16
26 F -0.18 -4.88 15.88 44.97 0.71 -4.17 16
27 H 0.07 0.97 7.80 -2.39 -0.02 0.95 16
28 H 0.10 0.85 7.80 -2.39 -0.02 0.84 16
29 H 0.10 0.94 7.56 -2.39 -0.02 0.92 16
30 H 0.42 8.92 7.62 -92.70 -0.71 8.21 16
31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.02 0.87 8.05 -2.39 -0.02 0.85 16
33 H 0.25 15.76 8.73 -92.71 -0.81 14.95 16
34 H 0.05 1.67 5.50 -2.39 -0.01 1.66 16
35 H 0.06 2.13 6.38 -2.39 -0.02 2.11 16
36 H 0.40 4.25 9.12 -74.06 -0.68 3.57 16
Total: -1.00 -75.70 306.83 1.57 -74.13
By element:
Atomic # 1 Polarization: 12.95 SS G_CDS: -0.41 Total: 12.54 kcal
Atomic # 6 Polarization: 12.54 SS G_CDS: 3.99 Total: 16.53 kcal
Atomic # 7 Polarization: -105.94 SS G_CDS: -3.99 Total: -109.93 kcal
Atomic # 8 Polarization: -30.65 SS G_CDS: -1.93 Total: -32.58 kcal
Atomic # 9 Polarization: -13.91 SS G_CDS: 2.21 Total: -11.70 kcal
Atomic # 14 Polarization: 49.32 SS G_CDS: 1.69 Total: 51.01 kcal
Total: -75.70 1.57 -74.13 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001220164756.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -164.403 kcal
(2) G-P(sol) polarization free energy of solvation -75.700 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -238.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds