Wall clock time and date at job start Tue Mar 31 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47349 * 264.98306 * 3 2 1 5 5 H 1.48500 * 109.47169 * 24.98779 * 3 2 1 6 6 H 1.48499 * 109.46786 * 144.98471 * 3 2 1 7 7 C 1.37872 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.16594 * 7 2 1 9 9 C 1.50696 * 120.00324 * 5.16915 * 7 2 1 10 10 O 1.42891 * 110.89073 * 59.46063 * 9 7 2 11 11 C 1.55160 * 111.00455 * 183.34668 * 9 7 2 12 12 C 1.54326 * 102.93981 * 153.61097 * 11 9 7 13 13 N 1.47027 * 107.27415 * 337.80715 * 12 11 9 14 14 C 1.34773 * 125.64611 * 178.98073 * 13 12 11 15 15 O 1.21606 * 119.99507 * 179.97438 * 14 13 12 16 16 C 1.47426 * 120.00378 * 359.97111 * 14 13 12 17 17 C 1.38042 * 126.41326 * 359.69431 * 16 14 13 18 18 N 1.34268 * 107.41737 * 179.83264 * 17 16 14 19 19 H 0.96998 * 125.75425 * 180.17310 * 18 17 16 20 20 N 1.39932 * 108.48596 * 0.42736 * 18 17 16 21 21 C 1.30449 * 108.90285 * 359.73149 * 20 18 17 22 22 N 1.48002 * 125.98865 * 179.97438 * 21 20 18 23 23 O 1.21804 * 119.99779 * 180.02562 * 22 21 20 24 24 O 1.21799 * 120.00328 * 0.02562 * 22 21 20 25 25 C 1.47529 * 108.71254 * 358.94046 * 13 12 11 26 26 H 0.97004 * 120.00275 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00352 * 294.09185 * 10 9 7 28 28 H 1.08994 * 110.71711 * 271.97246 * 11 9 7 29 29 H 1.08999 * 110.71918 * 35.25314 * 11 9 7 30 30 H 1.09001 * 109.88138 * 97.22545 * 12 11 9 31 31 H 1.09002 * 109.88321 * 218.38907 * 12 11 9 32 32 H 1.08002 * 126.29294 * 359.96080 * 17 16 14 33 33 H 1.08993 * 110.36909 * 265.30777 * 25 13 12 34 34 H 1.08997 * 110.40302 * 142.95324 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4896 1.4731 0.8034 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0837 9 6 1.2556 -2.4964 -0.1187 10 8 0.5059 -2.5446 -1.3341 11 6 2.2224 -3.7054 -0.0133 12 6 1.3124 -4.8297 0.5248 13 7 0.1686 -4.1860 1.1875 14 6 -0.8635 -4.8268 1.7710 15 8 -1.7586 -4.1894 2.2918 16 6 -0.9073 -6.3004 1.7779 17 6 0.0286 -7.1507 1.2242 18 7 -0.3851 -8.4074 1.4527 19 1 0.0769 -9.2149 1.1783 20 7 -1.5981 -8.3556 2.1485 21 6 -1.9183 -7.1067 2.3472 22 7 -3.1286 -6.6199 3.0462 23 8 -3.3203 -5.4234 3.1702 24 8 -3.9330 -7.4155 3.4973 25 6 0.3382 -2.7226 1.1089 26 1 -0.4851 0.8401 -0.0004 27 1 -0.2132 -1.8996 -1.3786 28 1 2.6205 -3.9674 -0.9935 29 1 3.0295 -3.4937 0.6881 30 1 0.9619 -5.4497 -0.3004 31 1 1.8614 -5.4396 1.2423 32 1 0.9293 -6.8587 0.7046 33 1 0.8157 -2.3469 2.0138 34 1 -0.6253 -2.2361 0.9573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261499392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:17 Heat of formation + Delta-G solvation = 18.749630 kcal Electronic energy + Delta-G solvation = -24335.291950 eV Core-core repulsion = 20467.693633 eV Total energy + Delta-G solvation = -3867.598316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.52605 -41.44688 -39.27633 -37.20703 -36.31711 -34.46311 -32.80905 -32.28288 -31.41923 -30.05435 -27.93286 -27.17917 -25.36837 -23.97212 -22.18155 -21.61707 -20.45126 -19.66081 -18.46340 -18.08346 -17.63726 -17.57417 -17.23819 -16.59353 -15.64610 -15.40996 -14.88742 -14.71904 -14.36831 -14.11852 -13.29266 -13.14611 -12.87173 -12.24826 -11.95408 -11.67646 -11.52486 -11.41479 -11.20984 -11.06154 -10.95753 -10.89539 -10.79130 -10.71419 -10.50401 -10.28929 -9.52908 -9.49988 -9.38014 -8.74642 -8.45243 -7.91799 -6.32174 -4.42055 0.03955 0.76735 0.95149 1.82525 2.26251 3.18689 3.26814 3.27957 3.39480 3.52983 3.83386 4.22045 4.28583 4.58159 4.71222 4.92746 5.11740 5.15161 5.35149 5.56139 5.79059 6.04488 6.17911 6.33275 6.34910 6.43328 6.58291 6.74568 6.86347 7.14768 7.27616 7.69354 7.79067 7.95241 8.05059 8.59288 8.64312 9.22058 9.31177 10.75001 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004362 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.419470 B = 6417.555524 C = 7201.730615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.117 4.117 12 C 0.091 3.909 13 N -0.604 5.604 14 C 0.577 3.423 15 O -0.499 6.499 16 C -0.217 4.217 17 C 0.101 3.899 18 N -0.424 5.424 19 H 0.459 0.541 20 N -0.218 5.218 21 C 0.171 3.829 22 N 0.041 4.959 23 O -0.044 6.044 24 O -0.163 6.163 25 C 0.097 3.903 26 H 0.271 0.729 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -14.685 0.500 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.155 4.155 12 C -0.032 4.032 13 N -0.337 5.337 14 C 0.362 3.638 15 O -0.374 6.374 16 C -0.233 4.233 17 C -0.049 4.049 18 N -0.138 5.138 19 H 0.307 0.693 20 N -0.050 5.050 21 C -0.075 4.075 22 N 0.570 4.430 23 O -0.277 6.277 24 O -0.370 6.370 25 C -0.024 4.024 26 H 0.081 0.919 27 H 0.232 0.768 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.083 0.917 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.803 -16.214 0.591 16.665 hybrid contribution 0.371 1.604 -0.031 1.647 sum 4.174 -14.610 0.560 15.205 Atomic orbital electron populations 1.69722 1.05987 1.28105 1.48928 1.25057 0.95010 0.99760 0.93182 0.86431 0.79703 0.82413 0.78425 1.20327 1.21020 1.19787 1.21405 0.93925 0.90146 1.52498 0.91534 1.19618 0.86851 0.91663 0.80979 1.86097 1.50226 1.62600 1.40175 1.22641 0.97462 0.94547 1.00885 1.22329 0.88221 0.97233 0.95427 1.48612 1.20578 1.09928 1.54621 1.16663 0.82518 0.84232 0.80348 1.90991 1.35629 1.66430 1.44375 1.20512 0.96179 0.96769 1.09849 1.24299 1.00246 0.83073 0.97316 1.46119 1.16400 1.08850 1.42393 0.69317 1.77092 0.98277 1.16526 1.13151 1.22801 0.90925 0.91825 1.01964 1.42256 0.99582 1.01500 0.99646 1.94872 1.78573 0.96357 1.57868 1.94567 1.39086 1.53426 1.49919 1.23416 1.03084 0.75208 1.00649 0.91854 0.76844 0.90499 0.90109 0.91970 0.92455 0.76352 0.91715 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.90 10.76 55.43 0.60 -22.31 16 2 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -13.27 8.25 -34.44 -0.28 -13.55 16 8 H 0.07 1.59 7.79 -52.49 -0.41 1.18 16 9 C 0.25 5.52 0.86 -89.62 -0.08 5.45 16 10 O -0.58 -13.74 13.14 -35.23 -0.46 -14.20 16 11 C -0.12 -1.99 6.13 -24.89 -0.15 -2.14 16 12 C 0.09 1.28 4.98 -3.06 -0.02 1.26 16 13 N -0.60 -11.17 3.33 -171.70 -0.57 -11.74 16 14 C 0.58 11.05 7.85 -12.52 -0.10 10.95 16 15 O -0.50 -11.46 13.46 -19.62 -0.26 -11.72 16 16 C -0.22 -3.27 6.10 -105.07 -0.64 -3.92 16 17 C 0.10 0.95 10.50 -16.56 -0.17 0.78 16 18 N -0.42 -3.37 7.29 30.85 0.22 -3.15 16 19 H 0.46 1.35 8.96 -182.73 -1.64 -0.28 16 20 N -0.22 -2.85 12.60 33.24 0.42 -2.43 16 21 C 0.17 2.74 8.20 -146.19 -1.20 1.54 16 22 N 0.04 0.75 4.45 33.23 0.15 0.89 16 23 O -0.04 -0.88 15.35 -37.34 -0.57 -1.46 16 24 O -0.16 -2.92 19.23 -29.46 -0.57 -3.48 16 25 C 0.10 2.16 5.42 -2.47 -0.01 2.15 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.38 9.39 7.59 45.56 0.35 9.73 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 30 H 0.06 0.74 6.83 -51.93 -0.35 0.39 16 31 H 0.06 0.59 7.03 -51.93 -0.36 0.23 16 32 H 0.22 1.33 4.42 -52.49 -0.23 1.09 16 33 H 0.06 1.50 8.03 -51.93 -0.42 1.08 16 34 H 0.09 2.32 7.36 -51.93 -0.38 1.94 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -31.93 296.55 -7.78 -39.71 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.43 Total: 6.51 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -2.75 Total: 4.27 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.82 Total: -38.73 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.87 Total: -30.86 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.93 -7.78 -39.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.461 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds