Wall clock time and date at job start Tue Mar 31 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47349 * 264.98306 * 3 2 1 5 5 H 1.48500 * 109.47169 * 24.98779 * 3 2 1 6 6 H 1.48499 * 109.46786 * 144.98471 * 3 2 1 7 7 C 1.37872 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.16594 * 7 2 1 9 9 C 1.50696 * 120.00324 * 5.16915 * 7 2 1 10 10 O 1.42891 * 110.89073 * 59.46063 * 9 7 2 11 11 C 1.55160 * 111.00455 * 183.34668 * 9 7 2 12 12 C 1.54326 * 102.93981 * 153.61097 * 11 9 7 13 13 N 1.47027 * 107.27415 * 337.80715 * 12 11 9 14 14 C 1.34773 * 125.64611 * 178.98073 * 13 12 11 15 15 O 1.21606 * 119.99507 * 179.97438 * 14 13 12 16 16 C 1.47426 * 120.00378 * 359.97111 * 14 13 12 17 17 C 1.38042 * 126.41326 * 359.69431 * 16 14 13 18 18 N 1.34268 * 107.41737 * 179.83264 * 17 16 14 19 19 H 0.96998 * 125.75425 * 180.17310 * 18 17 16 20 20 N 1.39932 * 108.48596 * 0.42736 * 18 17 16 21 21 C 1.30449 * 108.90285 * 359.73149 * 20 18 17 22 22 N 1.48002 * 125.98865 * 179.97438 * 21 20 18 23 23 O 1.21804 * 119.99779 * 180.02562 * 22 21 20 24 24 O 1.21799 * 120.00328 * 0.02562 * 22 21 20 25 25 C 1.47529 * 108.71254 * 358.94046 * 13 12 11 26 26 H 0.97004 * 120.00275 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00352 * 294.09185 * 10 9 7 28 28 H 1.08994 * 110.71711 * 271.97246 * 11 9 7 29 29 H 1.08999 * 110.71918 * 35.25314 * 11 9 7 30 30 H 1.09001 * 109.88138 * 97.22545 * 12 11 9 31 31 H 1.09002 * 109.88321 * 218.38907 * 12 11 9 32 32 H 1.08002 * 126.29294 * 359.96080 * 17 16 14 33 33 H 1.08993 * 110.36909 * 265.30777 * 25 13 12 34 34 H 1.08997 * 110.40302 * 142.95324 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4896 1.4731 0.8034 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0837 9 6 1.2556 -2.4964 -0.1187 10 8 0.5059 -2.5446 -1.3341 11 6 2.2224 -3.7054 -0.0133 12 6 1.3124 -4.8297 0.5248 13 7 0.1686 -4.1860 1.1875 14 6 -0.8635 -4.8268 1.7710 15 8 -1.7586 -4.1894 2.2918 16 6 -0.9073 -6.3004 1.7779 17 6 0.0286 -7.1507 1.2242 18 7 -0.3851 -8.4074 1.4527 19 1 0.0769 -9.2149 1.1783 20 7 -1.5981 -8.3556 2.1485 21 6 -1.9183 -7.1067 2.3472 22 7 -3.1286 -6.6199 3.0462 23 8 -3.3203 -5.4234 3.1702 24 8 -3.9330 -7.4155 3.4973 25 6 0.3382 -2.7226 1.1089 26 1 -0.4851 0.8401 -0.0004 27 1 -0.2132 -1.8996 -1.3786 28 1 2.6205 -3.9674 -0.9935 29 1 3.0295 -3.4937 0.6881 30 1 0.9619 -5.4497 -0.3004 31 1 1.8614 -5.4396 1.2423 32 1 0.9293 -6.8587 0.7046 33 1 0.8157 -2.3469 2.0138 34 1 -0.6253 -2.2361 0.9573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261499392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:16 Heat of formation + Delta-G solvation = -5.948102 kcal Electronic energy + Delta-G solvation = -24336.362924 eV Core-core repulsion = 20467.693633 eV Total energy + Delta-G solvation = -3868.669290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.66757 -42.65332 -40.72950 -38.77874 -37.69083 -36.09084 -34.18299 -33.83132 -32.67036 -31.41312 -29.47811 -28.46882 -27.07800 -25.26599 -23.38831 -22.85136 -21.73529 -21.20358 -19.78251 -19.26776 -19.04619 -18.86419 -18.68583 -17.91387 -17.12703 -16.86533 -16.32522 -16.08954 -15.97203 -15.21136 -14.84587 -14.62919 -14.51493 -13.66800 -13.46294 -13.21386 -13.02446 -12.84394 -12.79238 -12.55349 -12.40498 -12.32257 -12.22056 -12.19083 -12.04447 -11.73804 -11.17026 -10.90797 -10.62709 -10.57077 -10.24349 -9.42918 -8.20907 -6.37143 -1.27687 -0.35288 0.04378 0.54125 1.41650 1.45159 1.47166 1.55214 2.03030 2.16626 2.41792 2.80099 3.05470 3.27973 3.56990 3.70490 3.81873 4.03500 4.17406 4.30622 4.42343 4.60391 4.80443 5.00777 5.13553 5.14806 5.25258 5.34858 5.45272 5.53833 5.80488 5.81125 6.12497 6.37772 6.63119 6.73136 7.21288 7.30894 7.38516 8.83784 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004362 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.419470 B = 6417.555524 C = 7201.730615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.585 6.585 11 C -0.111 4.111 12 C 0.084 3.916 13 N -0.606 5.606 14 C 0.570 3.430 15 O -0.555 6.555 16 C -0.250 4.250 17 C 0.155 3.845 18 N -0.379 5.379 19 H 0.486 0.514 20 N -0.221 5.221 21 C 0.151 3.849 22 N 0.042 4.958 23 O -0.118 6.118 24 O -0.144 6.144 25 C 0.110 3.890 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.267 0.733 33 H 0.044 0.956 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -18.088 -0.609 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.190 3.810 10 O -0.392 6.392 11 C -0.149 4.149 12 C -0.037 4.037 13 N -0.339 5.339 14 C 0.358 3.642 15 O -0.433 6.433 16 C -0.267 4.267 17 C 0.003 3.997 18 N -0.097 5.097 19 H 0.341 0.659 20 N -0.055 5.055 21 C -0.094 4.094 22 N 0.564 4.436 23 O -0.334 6.334 24 O -0.360 6.360 25 C -0.013 4.013 26 H 0.076 0.924 27 H 0.219 0.781 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.282 0.718 33 H 0.062 0.938 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.062 -19.561 -0.539 20.804 hybrid contribution -0.551 2.448 0.276 2.525 sum 6.511 -17.113 -0.264 18.311 Atomic orbital electron populations 1.69863 1.07197 1.28266 1.50128 1.25785 0.95602 1.02744 0.93247 0.85557 0.78684 0.78957 0.78350 1.20068 1.21693 1.18866 1.21836 0.94355 0.91487 1.51656 0.91086 1.19881 0.87551 0.93455 0.80068 1.86083 1.49961 1.62108 1.41093 1.22641 0.96981 0.92812 1.02441 1.22734 0.86522 0.96816 0.97600 1.48573 1.21967 1.08427 1.54933 1.17221 0.81645 0.86045 0.79298 1.90970 1.37648 1.68107 1.46616 1.20168 0.98443 0.94760 1.13331 1.24711 0.99159 0.81983 0.93893 1.46169 1.14228 1.09871 1.39438 0.65881 1.77065 1.00217 1.14743 1.13474 1.22606 0.90252 0.93059 1.03515 1.42593 1.00422 1.01191 0.99349 1.94907 1.80326 0.97104 1.61020 1.94502 1.39805 1.52980 1.48730 1.22895 1.00443 0.77886 1.00030 0.92353 0.78070 0.88839 0.89017 0.88614 0.86992 0.71826 0.93758 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.33 10.76 21.45 0.23 -49.10 16 2 C 0.03 1.39 5.31 84.65 0.45 1.84 16 3 Si 0.96 40.79 29.54 68.60 2.03 42.82 16 4 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.56 -27.23 8.25 25.60 0.21 -27.02 16 8 H 0.07 3.33 7.79 -2.91 -0.02 3.31 16 9 C 0.23 10.15 0.86 -10.15 -0.01 10.14 16 10 O -0.59 -27.74 13.14 -148.98 -1.96 -29.70 16 11 C -0.11 -3.37 6.13 31.78 0.19 -3.17 16 12 C 0.08 1.94 4.98 86.73 0.43 2.38 16 13 N -0.61 -21.81 3.33 -815.38 -2.71 -24.52 16 14 C 0.57 21.96 7.85 86.66 0.68 22.64 16 15 O -0.55 -27.32 13.46 19.75 0.27 -27.05 16 16 C -0.25 -6.97 6.10 -20.15 -0.12 -7.09 16 17 C 0.15 1.97 10.50 84.27 0.88 2.86 16 18 N -0.38 -3.71 7.29 -56.31 -0.41 -4.12 16 19 H 0.49 -0.70 8.96 -213.43 -1.91 -2.61 16 20 N -0.22 -4.98 12.60 -48.75 -0.61 -5.59 16 21 C 0.15 4.63 8.20 130.80 1.07 5.70 16 22 N 0.04 1.58 4.45 -48.78 -0.22 1.36 16 23 O -0.12 -5.19 15.35 26.42 0.41 -4.79 16 24 O -0.14 -5.21 19.23 18.89 0.36 -4.85 16 25 C 0.11 5.07 5.42 86.84 0.47 5.54 16 26 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.37 19.04 7.59 -74.06 -0.56 18.48 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.09 2.57 8.03 -2.39 -0.02 2.55 16 30 H 0.10 1.62 6.83 -2.39 -0.02 1.60 16 31 H 0.11 1.45 7.03 -2.39 -0.02 1.43 16 32 H 0.27 0.86 4.42 -2.91 -0.01 0.85 16 33 H 0.04 2.15 8.03 -2.39 -0.02 2.13 16 34 H 0.04 2.42 7.36 -2.39 -0.02 2.41 16 Total: -1.00 -78.92 296.55 0.37 -78.55 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -1.27 Total: 13.18 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 4.26 Total: 13.81 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.73 Total: -81.97 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -0.92 Total: -66.39 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -78.92 0.37 -78.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.603 kcal (2) G-P(sol) polarization free energy of solvation -78.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds