Wall clock time and date at job start Tue Mar 31 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99640 * 2 1 4 4 O 1.20828 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99686 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47023 * 180.02562 * 5 3 2 7 7 C 1.36969 * 120.00074 * 264.91196 * 6 5 3 8 8 H 1.08001 * 120.00190 * 125.37323 * 7 6 5 9 9 C 1.38983 * 119.99681 * 305.37766 * 7 6 5 10 10 N 1.31403 * 120.00142 * 4.57801 * 9 7 6 11 11 Si 1.86805 * 119.99733 * 184.58578 * 9 7 6 12 12 H 1.48499 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47031 * 119.99682 * 11 9 7 14 14 H 1.48498 * 109.46747 * 239.99366 * 11 9 7 15 15 C 1.34780 * 120.00148 * 84.90768 * 6 5 3 16 16 O 1.21627 * 119.99487 * 3.50607 * 15 6 5 17 17 C 1.47404 * 120.00026 * 183.50190 * 15 6 5 18 18 C 1.37882 * 126.78295 * 172.16276 * 17 15 6 19 19 O 1.33510 * 108.33068 * 179.89223 * 18 17 15 20 20 C 1.34880 * 109.89595 * 0.38479 * 19 18 17 21 21 C 1.46777 * 125.64881 * 179.76208 * 20 19 18 22 22 N 1.34779 * 119.99848 * 359.97438 * 21 20 19 23 23 O 1.21684 * 120.00075 * 180.02562 * 21 20 19 24 24 C 1.36060 * 108.70996 * 359.76122 * 20 19 18 25 25 H 1.08998 * 109.47593 * 59.99480 * 1 2 3 26 26 H 1.09007 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47012 * 299.99397 * 1 2 3 28 28 H 1.09003 * 109.47158 * 60.00663 * 5 3 2 29 29 H 1.08991 * 109.47375 * 300.00319 * 5 3 2 30 30 H 0.97000 * 119.99968 * 180.02562 * 10 9 7 31 31 H 1.07999 * 125.83193 * 0.02562 * 18 17 15 32 32 H 0.96997 * 120.00094 * 0.02562 * 22 21 20 33 33 H 0.97002 * 120.00106 * 179.97438 * 22 21 20 34 34 H 1.07993 * 126.68446 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2771 3.3071 -1.1802 8 1 3.7750 4.2262 -1.4439 9 6 5.2231 2.7607 -2.0394 10 7 5.7682 1.5976 -1.7624 11 14 5.7197 3.6799 -3.5879 12 1 4.9655 4.9565 -3.6691 13 1 7.1763 3.9667 -3.5476 14 1 5.4120 2.8470 -4.7781 15 6 4.0729 3.3552 1.1639 16 8 3.8725 2.7816 2.2175 17 6 4.4156 4.7888 1.1586 18 6 4.4001 5.6454 2.2389 19 8 4.7762 6.8561 1.8203 20 6 5.0309 6.8253 0.4961 21 6 5.4636 7.9670 -0.3186 22 7 5.6373 9.1752 0.2528 23 8 5.6645 7.8228 -1.5100 24 6 4.8204 5.5607 0.0405 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.9564 0.7807 -0.8892 29 1 3.9556 0.7810 0.8907 30 1 6.4287 1.2164 -2.3619 31 1 4.1317 5.3815 3.2512 32 1 5.4767 9.2902 1.2025 33 1 5.9236 9.9297 -0.2855 34 1 4.9382 5.2129 -0.9751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321049693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:36 Heat of formation + Delta-G solvation = -124.703524 kcal Electronic energy + Delta-G solvation = -24160.325537 eV Core-core repulsion = 20254.213874 eV Total energy + Delta-G solvation = -3906.111663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25532 -39.79529 -38.94290 -38.31976 -35.76742 -34.86271 -33.69806 -32.58423 -31.72344 -29.51397 -28.64963 -26.53839 -25.14688 -23.30689 -22.48728 -20.83021 -19.96754 -19.29159 -18.52458 -17.06978 -16.98381 -16.49827 -16.01069 -15.98869 -15.85572 -15.60675 -15.23310 -14.68524 -14.33206 -14.17089 -13.84028 -13.58033 -12.91023 -12.68283 -12.62011 -12.52592 -12.04254 -11.70391 -11.42645 -11.28539 -11.07104 -10.67518 -10.36362 -10.25301 -10.23123 -9.74449 -9.72657 -9.34578 -9.20720 -8.85249 -8.27455 -7.57663 -6.54336 -4.43953 1.40035 2.31173 2.98327 3.04877 3.11781 3.21895 3.26630 3.33248 3.46792 3.68520 4.02019 4.37758 4.53927 4.85122 5.04254 5.44092 5.47575 5.50516 5.61183 5.67483 5.90657 6.07670 6.17224 6.30556 6.46048 6.72638 6.75048 6.92529 7.00819 7.10073 7.30105 7.47188 7.75865 8.16747 8.26590 8.55165 8.87459 9.19975 9.66514 10.49702 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.006156 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.351854 B = 4547.322200 C = 5780.323624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.445 3.555 4 O -0.507 6.507 5 C 0.128 3.872 6 N -0.417 5.417 7 C -0.349 4.349 8 H 0.097 0.903 9 C 0.055 3.945 10 N -0.863 5.863 11 Si 0.908 3.092 12 H -0.256 1.256 13 H -0.273 1.273 14 H -0.277 1.277 15 C 0.564 3.436 16 O -0.596 6.596 17 C -0.198 4.198 18 C 0.043 3.957 19 O -0.167 6.167 20 C -0.134 4.134 21 C 0.614 3.386 22 N -0.851 5.851 23 O -0.523 6.523 24 C -0.056 4.056 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.276 0.724 31 H 0.219 0.781 32 H 0.404 0.596 33 H 0.404 0.596 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 5.915 3.884 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.287 3.713 4 O -0.394 6.394 5 C 0.003 3.997 6 N -0.135 5.135 7 C -0.477 4.477 8 H 0.114 0.886 9 C -0.153 4.153 10 N -0.498 5.498 11 Si 0.732 3.268 12 H -0.179 1.179 13 H -0.198 1.198 14 H -0.203 1.203 15 C 0.354 3.646 16 O -0.482 6.482 17 C -0.202 4.202 18 C -0.030 4.030 19 O -0.063 6.063 20 C -0.184 4.184 21 C 0.401 3.599 22 N -0.415 5.415 23 O -0.400 6.400 24 C -0.076 4.076 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.233 0.767 33 H 0.235 0.765 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.256 5.772 3.689 7.212 hybrid contribution -0.022 0.558 -0.604 0.823 sum -2.278 6.330 3.085 7.401 Atomic orbital electron populations 1.23090 0.78159 1.02608 1.01956 1.86557 1.22172 1.34848 1.84904 1.25430 0.93693 0.80833 0.71367 1.90577 1.67105 1.36452 1.45246 1.21111 0.83735 0.87961 1.06899 1.42666 1.57144 1.08327 1.05393 1.19597 1.21544 1.09583 0.96945 0.88624 1.25655 0.94515 0.95709 0.99388 1.69694 1.26510 1.15864 1.37737 0.86131 0.79544 0.80373 0.80718 1.17926 1.19844 1.20253 1.17413 0.78414 0.84987 0.83737 1.90637 1.56105 1.69945 1.31532 1.20675 1.09928 0.96241 0.93392 1.24879 0.97738 0.80640 0.99750 1.83798 1.66183 1.32702 1.23614 1.21848 1.17370 0.97481 0.81727 1.16557 0.76261 0.81255 0.85868 1.43675 1.72538 1.11098 1.14145 1.90930 1.51529 1.83648 1.13897 1.23416 0.92321 0.89211 1.02665 0.92493 0.88911 0.92565 0.83912 0.88212 0.91390 0.76472 0.76697 0.76473 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.06 10.57 -39.26 -0.41 -7.48 16 3 C 0.44 10.05 7.99 36.01 0.29 10.33 16 4 O -0.51 -12.65 16.07 -18.75 -0.30 -12.95 16 5 C 0.13 3.00 5.46 -5.19 -0.03 2.98 16 6 N -0.42 -10.51 1.98 -117.32 -0.23 -10.74 16 7 C -0.35 -8.77 6.37 -14.98 -0.10 -8.87 16 8 H 0.10 2.42 5.87 -52.49 -0.31 2.11 16 9 C 0.06 1.36 5.34 -17.46 -0.09 1.26 16 10 N -0.86 -21.68 11.44 55.50 0.64 -21.05 16 11 Si 0.91 19.70 29.03 -169.99 -4.93 14.76 16 12 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 C 0.56 13.99 7.46 -12.53 -0.09 13.89 16 16 O -0.60 -15.43 16.56 5.25 0.09 -15.35 16 17 C -0.20 -4.27 6.05 -104.95 -0.63 -4.90 16 18 C 0.04 0.73 11.95 30.60 0.37 1.09 16 19 O -0.17 -2.63 10.32 6.17 0.06 -2.57 16 20 C -0.13 -2.40 7.09 -36.91 -0.26 -2.66 16 21 C 0.61 10.12 8.06 -12.81 -0.10 10.02 16 22 N -0.85 -9.20 8.87 30.29 0.27 -8.93 16 23 O -0.52 -10.55 17.68 5.20 0.09 -10.46 16 24 C -0.06 -1.18 8.75 -39.02 -0.34 -1.52 16 25 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.14 3.40 6.05 -51.93 -0.31 3.09 16 29 H 0.10 2.29 7.53 -51.93 -0.39 1.89 16 30 H 0.28 6.52 8.31 -40.82 -0.34 6.19 16 31 H 0.22 2.96 8.06 -52.49 -0.42 2.54 16 32 H 0.40 3.39 8.57 -40.82 -0.35 3.04 16 33 H 0.40 3.47 8.93 -40.82 -0.36 3.10 16 34 H 0.20 4.46 4.37 -52.49 -0.23 4.23 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -32.79 311.02 -2.76 -35.55 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -2.78 Total: 11.29 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 0.07 Total: 23.23 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.67 Total: -40.72 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.47 Total: -48.80 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.93 Total: 14.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.79 -2.76 -35.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321049693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.153 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds