Wall clock time and date at job start Tue Mar 31 2020 03:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99640 * 2 1 4 4 O 1.20828 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99686 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47023 * 180.02562 * 5 3 2 7 7 C 1.36969 * 120.00074 * 264.91196 * 6 5 3 8 8 H 1.08001 * 120.00190 * 125.37323 * 7 6 5 9 9 C 1.38983 * 119.99681 * 305.37766 * 7 6 5 10 10 N 1.31403 * 120.00142 * 4.57801 * 9 7 6 11 11 Si 1.86805 * 119.99733 * 184.58578 * 9 7 6 12 12 H 1.48499 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47031 * 119.99682 * 11 9 7 14 14 H 1.48498 * 109.46747 * 239.99366 * 11 9 7 15 15 C 1.34780 * 120.00148 * 84.90768 * 6 5 3 16 16 O 1.21627 * 119.99487 * 3.50607 * 15 6 5 17 17 C 1.47404 * 120.00026 * 183.50190 * 15 6 5 18 18 C 1.37882 * 126.78295 * 172.16276 * 17 15 6 19 19 O 1.33510 * 108.33068 * 179.89223 * 18 17 15 20 20 C 1.34880 * 109.89595 * 0.38479 * 19 18 17 21 21 C 1.46777 * 125.64881 * 179.76208 * 20 19 18 22 22 N 1.34779 * 119.99848 * 359.97438 * 21 20 19 23 23 O 1.21684 * 120.00075 * 180.02562 * 21 20 19 24 24 C 1.36060 * 108.70996 * 359.76122 * 20 19 18 25 25 H 1.08998 * 109.47593 * 59.99480 * 1 2 3 26 26 H 1.09007 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47012 * 299.99397 * 1 2 3 28 28 H 1.09003 * 109.47158 * 60.00663 * 5 3 2 29 29 H 1.08991 * 109.47375 * 300.00319 * 5 3 2 30 30 H 0.97000 * 119.99968 * 180.02562 * 10 9 7 31 31 H 1.07999 * 125.83193 * 0.02562 * 18 17 15 32 32 H 0.96997 * 120.00094 * 0.02562 * 22 21 20 33 33 H 0.97002 * 120.00106 * 179.97438 * 22 21 20 34 34 H 1.07993 * 126.68446 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2771 3.3071 -1.1802 8 1 3.7750 4.2262 -1.4439 9 6 5.2231 2.7607 -2.0394 10 7 5.7682 1.5976 -1.7624 11 14 5.7197 3.6799 -3.5879 12 1 4.9655 4.9565 -3.6691 13 1 7.1763 3.9667 -3.5476 14 1 5.4120 2.8470 -4.7781 15 6 4.0729 3.3552 1.1639 16 8 3.8725 2.7816 2.2175 17 6 4.4156 4.7888 1.1586 18 6 4.4001 5.6454 2.2389 19 8 4.7762 6.8561 1.8203 20 6 5.0309 6.8253 0.4961 21 6 5.4636 7.9670 -0.3186 22 7 5.6373 9.1752 0.2528 23 8 5.6645 7.8228 -1.5100 24 6 4.8204 5.5607 0.0405 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.9564 0.7807 -0.8892 29 1 3.9556 0.7810 0.8907 30 1 6.4287 1.2164 -2.3619 31 1 4.1317 5.3815 3.2512 32 1 5.4767 9.2902 1.2025 33 1 5.9236 9.9297 -0.2855 34 1 4.9382 5.2129 -0.9751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321049693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:35 Heat of formation + Delta-G solvation = -150.009861 kcal Electronic energy + Delta-G solvation = -24161.422902 eV Core-core repulsion = 20254.213874 eV Total energy + Delta-G solvation = -3907.209028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.70417 -41.54117 -40.30908 -40.07858 -37.48672 -36.74371 -34.90896 -34.09468 -33.62932 -30.98548 -30.29820 -28.01224 -26.99710 -24.66743 -24.13916 -22.41898 -21.58669 -20.94128 -20.01218 -18.72723 -18.31792 -18.19373 -17.51559 -17.42030 -17.38942 -17.20989 -16.88296 -16.49516 -16.01327 -15.56022 -15.29412 -15.21196 -14.53883 -14.40683 -14.24393 -14.15147 -13.56164 -13.41622 -13.11102 -12.94909 -12.87579 -12.46684 -12.11038 -11.77661 -11.65448 -11.55671 -11.10461 -10.95537 -10.82105 -10.72944 -9.76551 -9.44310 -8.43587 -6.37151 0.00171 0.69961 1.25294 1.37188 1.43870 1.54558 1.58046 1.71649 2.05849 2.23504 2.51649 2.57660 2.81450 2.98534 3.82130 3.98533 4.06197 4.08742 4.29801 4.32589 4.41016 4.59464 4.65234 4.70189 4.86398 4.93626 5.31176 5.34233 5.37329 5.63661 5.81829 5.89290 6.25374 6.33436 6.81214 6.96217 7.15883 7.31824 7.77872 8.61720 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.006156 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.351854 B = 4547.322200 C = 5780.323624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.536 6.536 5 C 0.126 3.874 6 N -0.431 5.431 7 C -0.354 4.354 8 H 0.087 0.913 9 C 0.026 3.974 10 N -0.885 5.885 11 Si 0.961 3.039 12 H -0.264 1.264 13 H -0.274 1.274 14 H -0.267 1.267 15 C 0.552 3.448 16 O -0.619 6.619 17 C -0.245 4.245 18 C 0.082 3.918 19 O -0.139 6.139 20 C -0.121 4.121 21 C 0.615 3.385 22 N -0.816 5.816 23 O -0.565 6.565 24 C -0.085 4.085 25 H 0.057 0.943 26 H 0.139 0.861 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.280 0.720 31 H 0.258 0.742 32 H 0.421 0.579 33 H 0.420 0.580 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 7.220 4.703 8.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.294 3.706 4 O -0.425 6.425 5 C 0.001 3.999 6 N -0.148 5.148 7 C -0.481 4.481 8 H 0.105 0.895 9 C -0.180 4.180 10 N -0.520 5.520 11 Si 0.784 3.216 12 H -0.188 1.188 13 H -0.199 1.199 14 H -0.191 1.191 15 C 0.344 3.656 16 O -0.507 6.507 17 C -0.249 4.249 18 C 0.009 3.991 19 O -0.033 6.033 20 C -0.172 4.172 21 C 0.400 3.600 22 N -0.380 5.380 23 O -0.446 6.446 24 C -0.106 4.106 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.273 0.727 32 H 0.253 0.747 33 H 0.254 0.746 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.496 7.103 4.535 8.789 hybrid contribution -0.018 0.160 -0.758 0.775 sum -2.514 7.264 3.777 8.564 Atomic orbital electron populations 1.23526 0.75211 1.05701 1.02068 1.86517 1.24916 1.32693 1.84080 1.25096 0.93365 0.81339 0.70791 1.90554 1.67611 1.37563 1.46767 1.21027 0.84840 0.87565 1.06429 1.42854 1.57510 1.08805 1.05668 1.19596 1.21872 1.09475 0.97193 0.89533 1.26179 0.94288 0.96172 1.01350 1.69749 1.26982 1.16568 1.38722 0.85342 0.78779 0.79056 0.78404 1.18846 1.19931 1.19141 1.17919 0.77911 0.86404 0.83321 1.90588 1.57370 1.70830 1.31906 1.20629 1.13486 0.95356 0.95457 1.25464 0.94116 0.79639 0.99913 1.83851 1.65080 1.31921 1.22418 1.21886 1.16018 0.97001 0.82264 1.16444 0.76312 0.82206 0.85086 1.43380 1.69998 1.09527 1.15138 1.90918 1.53665 1.84378 1.15627 1.23131 0.94647 0.90902 1.01900 0.92412 0.84326 0.92505 0.84619 0.88331 0.90967 0.72659 0.74738 0.74595 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.37 -13.85 10.57 -51.44 -0.54 -14.39 16 3 C 0.45 20.69 7.99 71.24 0.57 21.25 16 4 O -0.54 -27.18 16.07 21.96 0.35 -26.83 16 5 C 0.13 6.12 5.46 85.63 0.47 6.58 16 6 N -0.43 -22.38 1.98 -643.32 -1.28 -23.65 16 7 C -0.35 -18.41 6.37 84.07 0.54 -17.87 16 8 H 0.09 4.60 5.87 -2.91 -0.02 4.58 16 9 C 0.03 1.29 5.34 84.94 0.45 1.74 16 10 N -0.88 -45.35 11.44 21.67 0.25 -45.10 16 11 Si 0.96 41.38 29.03 68.60 1.99 43.37 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 15 C 0.55 27.99 7.46 86.66 0.65 28.64 16 16 O -0.62 -32.47 16.56 -4.12 -0.07 -32.54 16 17 C -0.25 -10.57 6.05 -20.08 -0.12 -10.69 16 18 C 0.08 2.60 11.95 67.74 0.81 3.41 16 19 O -0.14 -3.96 10.32 -0.85 -0.01 -3.97 16 20 C -0.12 -4.17 7.09 24.00 0.17 -4.00 16 21 C 0.61 19.22 8.06 86.47 0.70 19.92 16 22 N -0.82 -15.02 8.87 -176.32 -1.56 -16.58 16 23 O -0.57 -22.55 17.68 -4.30 -0.08 -22.63 16 24 C -0.09 -3.64 8.75 22.63 0.20 -3.44 16 25 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 26 H 0.14 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.06 1.59 8.13 -2.38 -0.02 1.57 16 28 H 0.14 6.70 6.05 -2.39 -0.01 6.69 16 29 H 0.10 4.69 7.53 -2.39 -0.02 4.67 16 30 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 31 H 0.26 6.01 8.06 -2.91 -0.02 5.99 16 32 H 0.42 5.33 8.57 -92.71 -0.79 4.53 16 33 H 0.42 5.80 8.93 -92.71 -0.83 4.97 16 34 H 0.17 8.14 4.37 -2.91 -0.01 8.12 16 Total: -1.00 -73.32 311.02 4.26 -69.05 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.42 Total: 25.73 kcal Atomic # 6 Polarization: 41.91 SS G_CDS: 5.62 Total: 47.53 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.59 Total: -85.34 kcal Atomic # 8 Polarization: -100.01 SS G_CDS: -0.34 Total: -100.35 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.99 Total: 43.37 kcal Total: -73.32 4.26 -69.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321049693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.956 kcal (2) G-P(sol) polarization free energy of solvation -73.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds