Wall clock time and date at job start Tue Mar 31 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48505 * 109.46843 * 239.99956 * 3 2 1 5 5 H 1.48500 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47013 * 120.00387 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.65042 * 178.89586 * 13 12 11 15 15 O 1.21568 * 120.00188 * 180.02562 * 14 13 12 16 16 C 1.47704 * 119.99926 * 0.02562 * 14 13 12 17 17 N 1.31815 * 126.51850 * 0.02581 * 16 14 13 18 18 N 1.28467 * 110.07122 * 179.97438 * 17 16 14 19 19 H 0.97008 * 124.87971 * 179.97438 * 18 17 16 20 20 C 1.35033 * 110.23392 * 359.97438 * 18 17 16 21 21 C 1.35367 * 107.22782 * 359.76687 * 20 18 17 22 22 N 1.48002 * 127.24925 * 180.24393 * 21 20 18 23 23 O 1.21800 * 119.99758 * 0.14094 * 22 21 20 24 24 O 1.21796 * 119.99841 * 180.13408 * 22 21 20 25 25 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 26 26 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 28 28 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 29 29 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 30 30 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 31 31 H 1.08998 * 109.88332 * 218.23443 * 12 11 9 32 32 H 1.07997 * 126.38452 * 179.97438 * 20 18 17 33 33 H 1.09009 * 110.36844 * 265.29198 * 25 13 12 34 34 H 1.09002 * 110.37005 * 142.96697 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7051 -4.7411 2.1531 15 8 -1.5566 -4.0803 2.7153 16 6 -0.7460 -6.2157 2.2275 17 7 0.1063 -7.0532 1.6709 18 7 -0.2276 -8.2645 1.9382 19 1 0.2515 -9.0518 1.6350 20 6 -1.3411 -8.2844 2.7017 21 6 -1.7037 -6.9979 2.9155 22 7 -2.8601 -6.5117 3.7009 23 8 -3.6063 -7.3076 4.2424 24 8 -3.0655 -5.3158 3.8057 25 6 0.4363 -2.6710 1.3058 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2208 -1.8683 -1.2404 28 1 2.5435 -4.0093 -0.9176 29 1 3.0876 -3.4620 0.7006 30 1 0.9492 -5.4571 -0.0284 31 1 1.9710 -5.3826 1.4325 32 1 -1.8462 -9.1629 3.0751 33 1 0.9845 -2.2567 2.1520 34 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332492726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:08 Heat of formation + Delta-G solvation = 7.056076 kcal Electronic energy + Delta-G solvation = -24317.611460 eV Core-core repulsion = 20449.506073 eV Total energy + Delta-G solvation = -3868.105387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.57576 -41.53408 -39.26477 -37.18224 -36.16619 -34.33030 -32.74918 -32.19551 -31.89630 -30.07237 -27.88242 -26.63230 -25.66808 -23.97184 -22.25659 -21.79091 -20.07154 -19.56492 -18.71991 -18.24428 -17.48789 -17.45776 -17.24644 -16.77717 -16.12836 -15.27964 -14.86751 -14.76380 -14.48605 -13.98641 -13.14876 -13.02199 -12.87720 -12.11027 -12.03831 -11.60720 -11.46026 -11.27798 -11.06434 -10.95916 -10.80122 -10.73564 -10.58598 -10.51662 -10.27294 -10.22312 -10.06320 -9.57489 -9.36260 -8.69641 -8.41472 -7.81564 -6.28964 -4.39448 0.20743 1.09903 1.30672 1.82457 2.31526 3.21253 3.27603 3.29026 3.31713 3.50702 3.89099 4.07801 4.25905 4.36506 4.72148 4.97647 5.17338 5.44673 5.71162 5.82443 6.06009 6.09168 6.24799 6.50309 6.52007 6.71116 6.83995 6.90823 7.05716 7.24653 7.33138 7.73357 7.91300 7.97887 8.08692 8.57417 8.64830 9.29957 9.40600 10.78093 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.004359 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.165914 B = 6421.398880 C = 7188.314663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.112 3.888 13 N -0.590 5.590 14 C 0.580 3.420 15 O -0.491 6.491 16 C 0.075 3.925 17 N -0.233 5.233 18 N -0.369 5.369 19 H 0.461 0.539 20 C 0.083 3.917 21 C -0.122 4.122 22 N 0.052 4.948 23 O -0.199 6.199 24 O -0.075 6.075 25 C 0.095 3.905 26 H 0.273 0.727 27 H 0.385 0.615 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.212 0.788 33 H 0.065 0.935 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -17.490 2.969 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.157 4.157 12 C -0.012 4.012 13 N -0.323 5.323 14 C 0.363 3.637 15 O -0.364 6.364 16 C -0.090 4.090 17 N -0.067 5.067 18 N -0.081 5.081 19 H 0.309 0.691 20 C -0.067 4.067 21 C -0.218 4.218 22 N 0.575 4.425 23 O -0.400 6.400 24 O -0.307 6.307 25 C -0.025 4.025 26 H 0.083 0.917 27 H 0.236 0.764 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.512 -17.947 2.215 18.257 hybrid contribution -0.554 0.833 0.612 1.173 sum 1.958 -17.114 2.827 17.456 Atomic orbital electron populations 1.69631 1.05989 1.28223 1.49256 1.25086 0.95044 0.99782 0.93253 0.86449 0.79527 0.82069 0.78791 1.20030 1.21021 1.19986 1.21433 0.93671 0.90004 1.52832 0.91483 1.19594 0.86086 0.91751 0.81644 1.86078 1.53935 1.52135 1.47203 1.22661 0.97735 0.95089 1.00259 1.22031 0.88450 0.95591 0.95088 1.48593 1.25196 1.10138 1.48339 1.16411 0.82813 0.83004 0.81482 1.91008 1.37083 1.63360 1.44909 1.22527 0.92122 0.96608 0.97778 1.74158 1.22886 0.89208 1.20459 1.43398 1.20092 1.08032 1.36627 0.69097 1.22630 0.90324 0.98489 0.95304 1.21135 0.96797 0.93609 1.10269 1.42322 0.99774 1.01336 0.99047 1.94499 1.43672 1.53264 1.48581 1.94826 1.76008 0.97081 1.62830 1.23409 1.03156 0.75517 1.00466 0.91735 0.76409 0.90715 0.90423 0.91798 0.92392 0.77098 0.91633 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 10.68 55.43 0.59 -22.95 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.80 8.26 -34.44 -0.28 -14.08 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.26 16 9 C 0.25 5.95 0.89 -89.63 -0.08 5.87 16 10 O -0.58 -14.76 13.19 -35.23 -0.46 -15.23 16 11 C -0.12 -2.32 6.13 -24.90 -0.15 -2.48 16 12 C 0.11 1.98 5.54 -3.07 -0.02 1.96 16 13 N -0.59 -12.25 3.33 -171.68 -0.57 -12.82 16 14 C 0.58 12.00 7.86 -12.39 -0.10 11.90 16 15 O -0.49 -11.67 13.70 -19.24 -0.26 -11.93 16 16 C 0.07 1.22 6.98 -82.76 -0.58 0.64 16 17 N -0.23 -2.90 9.76 33.42 0.33 -2.58 16 18 N -0.37 -2.66 6.83 30.47 0.21 -2.45 16 19 H 0.46 0.97 8.96 -190.43 -1.71 -0.74 16 20 C 0.08 0.69 11.77 -17.17 -0.20 0.48 16 21 C -0.12 -1.75 7.25 -79.74 -0.58 -2.33 16 22 N 0.05 0.90 4.45 34.07 0.15 1.05 16 23 O -0.20 -3.17 19.07 -29.46 -0.56 -3.73 16 24 O -0.07 -1.53 15.61 -37.23 -0.58 -2.11 16 25 C 0.10 2.26 5.51 -2.53 -0.01 2.25 16 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.38 10.05 7.18 45.56 0.33 10.38 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 30 H 0.06 1.10 7.66 -51.93 -0.40 0.70 16 31 H 0.06 0.89 7.77 -51.93 -0.40 0.49 16 32 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.07 1.58 8.03 -51.92 -0.42 1.17 16 34 H 0.09 2.38 7.48 -51.93 -0.39 1.99 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -32.76 300.31 -7.55 -40.30 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.79 Total: 6.91 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.10 Total: 5.95 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.71 Total: -39.74 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.87 Total: -33.00 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.76 -7.55 -40.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332492726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.361 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds