Wall clock time and date at job start Tue Mar 31 2020 04:37:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46506 * 119.99936 * 2 1
4 4 C 1.50701 * 109.46970 * 85.00357 * 3 2 1
5 5 H 1.08005 * 119.99694 * 359.97438 * 4 3 2
6 6 C 1.37871 * 120.00052 * 180.02562 * 4 3 2
7 7 N 1.31513 * 120.00074 * 180.02562 * 6 4 3
8 8 Si 1.86801 * 120.00171 * 359.97438 * 6 4 3
9 9 H 1.48502 * 109.47010 * 90.00165 * 8 6 4
10 10 H 1.48496 * 109.47338 * 210.00715 * 8 6 4
11 11 H 1.48504 * 109.46968 * 330.00328 * 8 6 4
12 12 S 1.65597 * 119.99926 * 180.27960 * 2 1 3
13 13 O 1.42095 * 106.40469 * 23.26116 * 12 2 1
14 14 O 1.42098 * 106.40441 * 156.18457 * 12 2 1
15 15 N 1.65602 * 107.21619 * 269.72326 * 12 2 1
16 16 C 1.47424 * 125.64724 * 269.69122 * 15 12 2
17 17 C 1.55137 * 104.72004 * 155.81808 * 16 15 12
18 18 C 1.55150 * 101.48424 * 37.29690 * 17 16 15
19 19 F 1.39896 * 110.72399 * 82.69520 * 18 17 16
20 20 C 1.53003 * 110.86906 * 205.89701 * 18 17 16
21 21 O 1.42899 * 109.47315 * 293.60971 * 20 18 17
22 22 C 1.47022 * 125.64970 * 89.99816 * 15 12 2
23 23 H 1.09003 * 109.47269 * 89.99349 * 1 2 3
24 24 H 1.08994 * 109.47173 * 210.00167 * 1 2 3
25 25 H 1.09005 * 109.47077 * 330.00338 * 1 2 3
26 26 H 1.08999 * 109.46864 * 204.99706 * 3 2 1
27 27 H 1.08999 * 109.46950 * 325.00088 * 3 2 1
28 28 H 0.97000 * 120.00214 * 179.97438 * 7 6 4
29 29 H 1.09003 * 110.36524 * 274.74582 * 16 15 12
30 30 H 1.09003 * 110.36907 * 37.07448 * 16 15 12
31 31 H 1.09002 * 111.18787 * 279.18805 * 17 16 15
32 32 H 1.08998 * 110.90296 * 155.27436 * 17 16 15
33 33 H 1.09000 * 109.47133 * 53.61473 * 20 18 17
34 34 H 1.09007 * 109.47149 * 173.60893 * 20 18 17
35 35 H 0.96699 * 114.00211 * 179.97438 * 21 20 18
36 36 H 1.08997 * 109.88311 * 300.44753 * 22 15 12
37 37 H 1.09001 * 109.87960 * 61.45124 * 22 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3415 1.7657 1.4154
5 1 1.9283 1.1937 2.2332
6 6 2.9997 2.9508 1.6664
7 7 3.1258 3.3842 2.9017
8 14 3.7138 3.9403 0.2521
9 1 2.6949 4.8995 -0.2450
10 1 4.9080 4.6866 0.7233
11 1 4.1061 3.0213 -0.8465
12 16 2.2930 -1.4341 -0.0070
13 8 1.4091 -2.4051 -0.5501
14 8 3.5736 -1.1554 -0.5561
15 7 2.5446 -1.8625 1.5727
16 6 3.7158 -1.4911 2.3875
17 6 3.2152 -1.5652 3.8540
18 6 2.2715 -2.7953 3.7966
19 9 2.9996 -3.9838 3.9169
20 6 1.1968 -2.7090 4.8821
21 8 1.8093 -2.8172 6.1686
22 6 1.6402 -2.6815 2.3930
23 1 -0.3634 0.0001 -1.0277
24 1 -0.3633 -0.8899 0.5138
25 1 -0.3633 0.8901 0.5138
26 1 3.1858 1.1177 -0.4343
27 1 1.6501 2.0043 -0.5894
28 1 3.5893 4.2178 3.0783
29 1 4.5298 -2.1977 2.2259
30 1 4.0386 -0.4779 2.1481
31 1 2.6666 -0.6643 4.1291
32 1 4.0443 -1.7404 4.5396
33 1 0.6788 -1.7530 4.8055
34 1 0.4816 -3.5212 4.7508
35 1 1.1859 -2.7701 6.9063
36 1 0.6650 -2.1998 2.4630
37 1 1.5333 -3.6719 1.9506
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001340028035.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:37:19
Heat of formation + Delta-G solvation = -162.422794 kcal
Electronic energy + Delta-G solvation = -23865.526431 eV
Core-core repulsion = 20105.595878 eV
Total energy + Delta-G solvation = -3759.930552 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 296.104 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-47.54642 -38.10035 -36.80754 -36.50168 -35.69182 -35.36326 -32.51032 -31.01711
-29.39515 -28.45714 -25.46676 -25.19604 -22.43375 -21.82311 -20.44073 -18.62946
-17.60146 -17.58675 -17.04637 -16.78882 -16.34790 -15.57919 -15.35785 -14.89948
-14.38225 -14.19276 -14.04200 -13.91127 -13.25880 -13.20502 -12.96263 -12.62881
-12.49082 -12.46867 -12.22952 -11.92447 -11.65782 -11.43098 -11.39029 -11.33129
-11.12996 -10.82259 -10.75629 -10.58410 -10.48661 -10.22348 -10.12672 -9.66015
-8.78802 -8.71053 -8.17681 -6.22598 -4.23345 1.05898 3.20659 3.27146
3.33089 3.35162 3.76319 3.96695 4.30160 4.41506 4.46285 4.55325
4.79438 4.92104 5.10473 5.19911 5.25163 5.42222 5.45971 5.49345
5.64770 5.91425 5.96130 6.05161 6.08832 6.16473 6.34070 6.41399
6.43435 6.61374 6.77578 7.04320 7.31907 7.43462 7.47415 8.34133
8.79697 9.38375 10.89239
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.015423 B = 0.006904 C = 0.005543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1815.048975 B = 4054.598713 C = 5050.489019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.105 3.895
2 N -0.991 5.991
3 C 0.212 3.788
4 C -0.542 4.542
5 H 0.082 0.918
6 C 0.078 3.922
7 N -0.891 5.891
8 Si 0.866 3.134
9 H -0.275 1.275
10 H -0.283 1.283
11 H -0.260 1.260
12 S 2.804 3.196
13 O -0.992 6.992
14 O -0.972 6.972
15 N -1.012 6.012
16 C 0.121 3.879
17 C -0.135 4.135
18 C 0.111 3.889
19 F -0.195 7.195
20 C 0.066 3.934
21 O -0.562 6.562
22 C 0.111 3.889
23 H 0.046 0.954
24 H 0.054 0.946
25 H 0.076 0.924
26 H 0.048 0.952
27 H 0.032 0.968
28 H 0.266 0.734
29 H 0.065 0.935
30 H 0.102 0.898
31 H 0.102 0.898
32 H 0.092 0.908
33 H 0.072 0.928
34 H 0.057 0.943
35 H 0.382 0.618
36 H 0.079 0.921
37 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.498 -9.552 2.923 11.402
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.832 5.832
3 C 0.088 3.912
4 C -0.581 4.581
5 H 0.100 0.900
6 C -0.126 4.126
7 N -0.529 5.529
8 Si 0.693 3.307
9 H -0.200 1.200
10 H -0.209 1.209
11 H -0.185 1.185
12 S 2.813 3.187
13 O -0.976 6.976
14 O -0.956 6.956
15 N -0.851 5.851
16 C -0.004 4.004
17 C -0.174 4.174
18 C 0.091 3.909
19 F -0.175 7.175
20 C -0.013 4.013
21 O -0.367 6.367
22 C -0.016 4.016
23 H 0.065 0.935
24 H 0.073 0.927
25 H 0.095 0.905
26 H 0.066 0.934
27 H 0.050 0.950
28 H 0.076 0.924
29 H 0.083 0.917
30 H 0.120 0.880
31 H 0.121 0.879
32 H 0.111 0.889
33 H 0.090 0.910
34 H 0.075 0.925
35 H 0.229 0.771
36 H 0.098 0.902
37 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.597 -9.930 1.784 11.087
hybrid contribution -0.313 0.938 0.137 0.998
sum -4.910 -8.992 1.921 10.424
Atomic orbital electron populations
1.21263 0.79658 1.02429 1.00782 1.57510 1.14405 1.22778 1.88507
1.19645 0.92191 0.80789 0.98555 1.21424 1.37329 1.07562 0.91822
0.90040 1.24838 0.95243 0.97082 0.95453 1.69874 1.42237 1.21975
1.18801 0.86986 0.79392 0.80913 0.83425 1.20032 1.20873 1.18477
1.01281 0.73023 0.72498 0.71920 1.93544 1.67232 1.60229 1.76587
1.93574 1.41004 1.85230 1.75811 1.59062 1.30047 1.65053 1.30893
1.22094 0.86930 1.02386 0.88956 1.23331 0.99826 0.96929 0.97302
1.21870 0.91830 0.83135 0.94075 1.92861 1.79304 1.48412 1.96933
1.22587 0.93773 1.01554 0.83345 1.86511 1.38322 1.96914 1.15001
1.22012 0.93497 0.96618 0.89435 0.93542 0.92731 0.90507 0.93442
0.94956 0.92441 0.91705 0.88024 0.87949 0.88941 0.90989 0.92462
0.77060 0.90234 0.89997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.68 10.30 59.85 0.62 2.30 16
2 N -0.99 -19.38 3.23 -123.05 -0.40 -19.78 16
3 C 0.21 4.77 4.48 -5.19 -0.02 4.75 16
4 C -0.54 -13.66 9.94 -34.44 -0.34 -14.00 16
5 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16
6 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16
7 N -0.89 -24.90 13.96 55.43 0.77 -24.13 16
8 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16
9 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16
10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
11 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16
12 S 2.80 54.82 6.32 -107.50 -0.68 54.14 16
13 O -0.99 -19.78 16.79 -57.17 -0.96 -20.74 16
14 O -0.97 -21.83 16.27 -57.17 -0.93 -22.76 16
15 N -1.01 -17.48 3.75 -111.29 -0.42 -17.90 16
16 C 0.12 2.08 6.99 -2.41 -0.02 2.06 16
17 C -0.13 -2.06 6.21 -24.46 -0.15 -2.21 16
18 C 0.11 1.54 1.31 -88.79 -0.12 1.42 16
19 F -0.19 -3.04 16.89 2.25 0.04 -3.01 16
20 C 0.07 0.73 6.14 37.16 0.23 0.96 16
21 O -0.56 -6.41 13.44 -35.23 -0.47 -6.88 16
22 C 0.11 1.59 6.40 -3.07 -0.02 1.57 16
23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
24 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16
25 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16
26 H 0.05 1.14 5.97 -51.93 -0.31 0.83 16
27 H 0.03 0.70 7.54 -51.93 -0.39 0.31 16
28 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16
29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
30 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16
31 H 0.10 1.65 8.03 -51.93 -0.42 1.24 16
32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
33 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16
34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
35 H 0.38 2.40 9.12 45.56 0.42 2.82 16
36 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16
37 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16
LS Contribution 323.75 15.07 4.88 4.88
Total: -1.00 -32.54 323.75 -7.24 -39.78
By element:
Atomic # 1 Polarization: 6.59 SS G_CDS: -4.48 Total: 2.11 kcal
Atomic # 6 Polarization: -1.28 SS G_CDS: 0.08 Total: -1.21 kcal
Atomic # 7 Polarization: -61.77 SS G_CDS: -0.04 Total: -61.81 kcal
Atomic # 8 Polarization: -48.02 SS G_CDS: -2.36 Total: -50.38 kcal
Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.01 kcal
Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal
Atomic # 16 Polarization: 54.82 SS G_CDS: -0.68 Total: 54.14 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -32.54 -7.24 -39.78 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340028035.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -122.647 kcal
(2) G-P(sol) polarization free energy of solvation -32.539 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.185 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds