Wall clock time and date at job start Tue Mar 31 2020 04:37:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46506 * 119.99936 * 2 1
4 4 C 1.50701 * 109.46970 * 85.00357 * 3 2 1
5 5 H 1.08005 * 119.99694 * 359.97438 * 4 3 2
6 6 C 1.37871 * 120.00052 * 180.02562 * 4 3 2
7 7 N 1.31513 * 120.00074 * 180.02562 * 6 4 3
8 8 Si 1.86801 * 120.00171 * 359.97438 * 6 4 3
9 9 H 1.48502 * 109.47010 * 90.00165 * 8 6 4
10 10 H 1.48496 * 109.47338 * 210.00715 * 8 6 4
11 11 H 1.48504 * 109.46968 * 330.00328 * 8 6 4
12 12 S 1.65597 * 119.99926 * 180.27960 * 2 1 3
13 13 O 1.42095 * 106.40469 * 23.26116 * 12 2 1
14 14 O 1.42098 * 106.40441 * 156.18457 * 12 2 1
15 15 N 1.65602 * 107.21619 * 269.72326 * 12 2 1
16 16 C 1.47424 * 125.64724 * 269.69122 * 15 12 2
17 17 C 1.55137 * 104.72004 * 155.81808 * 16 15 12
18 18 C 1.55150 * 101.48424 * 37.29690 * 17 16 15
19 19 F 1.39896 * 110.72399 * 82.69520 * 18 17 16
20 20 C 1.53003 * 110.86906 * 205.89701 * 18 17 16
21 21 O 1.42899 * 109.47315 * 293.60971 * 20 18 17
22 22 C 1.47022 * 125.64970 * 89.99816 * 15 12 2
23 23 H 1.09003 * 109.47269 * 89.99349 * 1 2 3
24 24 H 1.08994 * 109.47173 * 210.00167 * 1 2 3
25 25 H 1.09005 * 109.47077 * 330.00338 * 1 2 3
26 26 H 1.08999 * 109.46864 * 204.99706 * 3 2 1
27 27 H 1.08999 * 109.46950 * 325.00088 * 3 2 1
28 28 H 0.97000 * 120.00214 * 179.97438 * 7 6 4
29 29 H 1.09003 * 110.36524 * 274.74582 * 16 15 12
30 30 H 1.09003 * 110.36907 * 37.07448 * 16 15 12
31 31 H 1.09002 * 111.18787 * 279.18805 * 17 16 15
32 32 H 1.08998 * 110.90296 * 155.27436 * 17 16 15
33 33 H 1.09000 * 109.47133 * 53.61473 * 20 18 17
34 34 H 1.09007 * 109.47149 * 173.60893 * 20 18 17
35 35 H 0.96699 * 114.00211 * 179.97438 * 21 20 18
36 36 H 1.08997 * 109.88311 * 300.44753 * 22 15 12
37 37 H 1.09001 * 109.87960 * 61.45124 * 22 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3415 1.7657 1.4154
5 1 1.9283 1.1937 2.2332
6 6 2.9997 2.9508 1.6664
7 7 3.1258 3.3842 2.9017
8 14 3.7138 3.9403 0.2521
9 1 2.6949 4.8995 -0.2450
10 1 4.9080 4.6866 0.7233
11 1 4.1061 3.0213 -0.8465
12 16 2.2930 -1.4341 -0.0070
13 8 1.4091 -2.4051 -0.5501
14 8 3.5736 -1.1554 -0.5561
15 7 2.5446 -1.8625 1.5727
16 6 3.7158 -1.4911 2.3875
17 6 3.2152 -1.5652 3.8540
18 6 2.2715 -2.7953 3.7966
19 9 2.9996 -3.9838 3.9169
20 6 1.1968 -2.7090 4.8821
21 8 1.8093 -2.8172 6.1686
22 6 1.6402 -2.6815 2.3930
23 1 -0.3634 0.0001 -1.0277
24 1 -0.3633 -0.8899 0.5138
25 1 -0.3633 0.8901 0.5138
26 1 3.1858 1.1177 -0.4343
27 1 1.6501 2.0043 -0.5894
28 1 3.5893 4.2178 3.0783
29 1 4.5298 -2.1977 2.2259
30 1 4.0386 -0.4779 2.1481
31 1 2.6666 -0.6643 4.1291
32 1 4.0443 -1.7404 4.5396
33 1 0.6788 -1.7530 4.8055
34 1 0.4816 -3.5212 4.7508
35 1 1.1859 -2.7701 6.9063
36 1 0.6650 -2.1998 2.4630
37 1 1.5333 -3.6719 1.9506
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001340028035.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:37:18
Heat of formation + Delta-G solvation = -189.181178 kcal
Electronic energy + Delta-G solvation = -23866.686761 eV
Core-core repulsion = 20105.595878 eV
Total energy + Delta-G solvation = -3761.090883 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 296.104 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-48.70797 -39.28371 -38.42364 -37.42837 -37.30337 -36.99127 -34.46600 -32.19424
-30.64539 -30.20460 -26.81332 -26.41091 -23.96123 -23.43400 -21.55681 -20.09772
-19.23210 -18.76661 -18.49797 -18.40047 -17.56131 -17.04928 -16.53187 -16.26493
-15.99239 -15.58099 -15.31346 -15.08526 -14.66191 -14.56299 -14.36918 -14.25560
-14.06344 -13.72283 -13.50937 -13.43349 -13.27551 -13.13091 -13.02758 -12.77774
-12.44501 -12.41233 -12.28946 -11.99797 -11.93595 -11.63880 -11.55273 -10.96961
-10.73681 -10.14952 -9.76730 -8.25823 -6.28714 -0.46781 1.36231 1.42035
1.50151 1.84260 2.36606 2.46695 2.75305 3.08957 3.20407 3.35217
3.43863 3.53321 3.92327 4.06140 4.13912 4.23778 4.37147 4.45236
4.57072 4.63103 4.67144 4.75803 4.82334 4.91867 4.96031 5.00413
5.04996 5.16341 5.27075 5.36641 5.49304 5.78446 6.33670 6.75940
6.87698 7.35221 8.88165
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.015423 B = 0.006904 C = 0.005543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1815.048975 B = 4054.598713 C = 5050.489019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.995 5.995
3 C 0.217 3.783
4 C -0.531 4.531
5 H 0.062 0.938
6 C 0.028 3.972
7 N -0.930 5.930
8 Si 0.916 3.084
9 H -0.262 1.262
10 H -0.285 1.285
11 H -0.256 1.256
12 S 2.815 3.185
13 O -0.994 6.994
14 O -1.006 7.006
15 N -1.015 6.015
16 C 0.119 3.881
17 C -0.129 4.129
18 C 0.111 3.889
19 F -0.205 7.205
20 C 0.070 3.930
21 O -0.584 6.584
22 C 0.103 3.897
23 H 0.064 0.936
24 H 0.077 0.923
25 H 0.077 0.923
26 H 0.034 0.966
27 H 0.046 0.954
28 H 0.266 0.734
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.082 0.918
34 H 0.084 0.916
35 H 0.404 0.596
36 H 0.105 0.895
37 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.913 -10.217 2.689 12.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.836 5.836
3 C 0.092 3.908
4 C -0.570 4.570
5 H 0.080 0.920
6 C -0.172 4.172
7 N -0.570 5.570
8 Si 0.741 3.259
9 H -0.187 1.187
10 H -0.211 1.211
11 H -0.180 1.180
12 S 2.824 3.176
13 O -0.978 6.978
14 O -0.991 6.991
15 N -0.855 5.855
16 C -0.006 4.006
17 C -0.168 4.168
18 C 0.091 3.909
19 F -0.186 7.186
20 C -0.009 4.009
21 O -0.393 6.393
22 C -0.023 4.023
23 H 0.083 0.917
24 H 0.095 0.905
25 H 0.095 0.905
26 H 0.052 0.948
27 H 0.064 0.936
28 H 0.075 0.925
29 H 0.090 0.910
30 H 0.090 0.910
31 H 0.109 0.891
32 H 0.114 0.886
33 H 0.100 0.900
34 H 0.102 0.898
35 H 0.255 0.745
36 H 0.123 0.877
37 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -6.055 -10.612 1.546 12.315
hybrid contribution 0.097 1.064 0.272 1.102
sum -5.957 -9.548 1.818 11.400
Atomic orbital electron populations
1.21547 0.77428 1.03618 1.02415 1.57457 1.15948 1.21472 1.88760
1.19416 0.92273 0.82304 0.96788 1.21585 1.35913 1.06820 0.92706
0.91981 1.25515 0.95972 0.98391 0.97325 1.69984 1.43799 1.22660
1.20563 0.86181 0.78930 0.79858 0.80977 1.18651 1.21096 1.17999
1.00767 0.72246 0.72369 0.72171 1.93533 1.67080 1.60132 1.77065
1.93525 1.42784 1.85688 1.77068 1.58878 1.30697 1.65364 1.30581
1.22074 0.87406 1.00864 0.90284 1.23228 1.00287 0.97503 0.95830
1.21979 0.92003 0.81758 0.95162 1.92841 1.79770 1.48923 1.97028
1.22575 0.92725 1.03219 0.82377 1.86449 1.39972 1.97014 1.15876
1.22310 0.93937 0.96893 0.89172 0.91712 0.90475 0.90460 0.94837
0.93608 0.92515 0.90999 0.90977 0.89060 0.88617 0.89958 0.89778
0.74533 0.87722 0.89015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 2.80 10.30 127.77 1.32 4.12 16
2 N -1.00 -37.62 3.23 -543.21 -1.75 -39.37 16
3 C 0.22 9.60 4.48 85.63 0.38 9.99 16
4 C -0.53 -26.76 9.94 25.60 0.25 -26.51 16
5 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16
6 C 0.03 1.47 5.47 84.65 0.46 1.93 16
7 N -0.93 -52.64 13.96 21.44 0.30 -52.34 16
8 Si 0.92 41.16 27.47 68.60 1.88 43.04 16
9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
11 H -0.26 -11.23 6.54 99.48 0.65 -10.58 16
12 S 2.81 107.53 6.32 -56.49 -0.36 107.17 16
13 O -0.99 -37.77 16.79 -128.00 -2.15 -39.92 16
14 O -1.01 -45.33 16.27 -128.00 -2.08 -47.41 16
15 N -1.02 -34.27 3.75 -506.00 -1.90 -36.17 16
16 C 0.12 4.12 6.99 86.94 0.61 4.73 16
17 C -0.13 -3.92 6.21 32.06 0.20 -3.72 16
18 C 0.11 2.89 1.31 -9.61 -0.01 2.88 16
19 F -0.21 -6.09 16.89 44.97 0.76 -5.33 16
20 C 0.07 1.35 6.14 71.98 0.44 1.79 16
21 O -0.58 -12.03 13.44 -148.98 -2.00 -14.04 16
22 C 0.10 2.71 6.40 86.73 0.55 3.26 16
23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
24 H 0.08 1.91 7.79 -2.39 -0.02 1.89 16
25 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16
26 H 0.03 1.59 5.97 -2.39 -0.01 1.58 16
27 H 0.05 1.91 7.54 -2.39 -0.02 1.90 16
28 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16
29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
30 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16
31 H 0.09 2.97 8.03 -2.39 -0.02 2.95 16
32 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16
33 H 0.08 1.42 8.11 -2.39 -0.02 1.41 16
34 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16
35 H 0.40 4.09 9.12 -74.06 -0.68 3.42 16
36 H 0.10 2.23 7.82 -2.39 -0.02 2.21 16
37 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16
Total: -1.00 -68.82 323.75 -2.74 -71.56
By element:
Atomic # 1 Polarization: 13.97 SS G_CDS: 0.35 Total: 14.33 kcal
Atomic # 6 Polarization: -5.74 SS G_CDS: 4.21 Total: -1.53 kcal
Atomic # 7 Polarization: -124.52 SS G_CDS: -3.35 Total: -127.88 kcal
Atomic # 8 Polarization: -95.13 SS G_CDS: -6.23 Total: -101.36 kcal
Atomic # 9 Polarization: -6.09 SS G_CDS: 0.76 Total: -5.33 kcal
Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.04 kcal
Atomic # 16 Polarization: 107.53 SS G_CDS: -0.36 Total: 107.17 kcal
Total: -68.82 -2.74 -71.56 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340028035.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.624 kcal
(2) G-P(sol) polarization free energy of solvation -68.819 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.738 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) -189.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds