Wall clock time and date at job start Tue Mar 31 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00364 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00102 * 3 2 1 7 7 C 1.38985 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.37325 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.36486 * 126.07127 * 179.97438 * 9 7 2 11 11 C 1.35688 * 107.50964 * 179.97438 * 10 9 7 12 12 N 1.40593 * 126.07995 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99462 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00585 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99856 * 180.02562 * 13 12 11 16 16 H 1.08996 * 108.86411 * 41.41307 * 15 13 12 17 17 C 1.52827 * 108.88612 * 282.91923 * 15 13 12 18 18 S 1.82043 * 108.21721 * 187.42007 * 17 15 13 19 19 C 1.81850 * 101.24842 * 61.39531 * 18 17 15 20 20 C 1.50142 * 109.06522 * 315.92047 * 19 18 17 21 21 O 1.21282 * 116.83351 * 200.59878 * 20 19 18 22 22 N 1.31768 * 126.34376 * 20.56575 * 20 19 18 23 23 C 1.40648 * 107.83285 * 359.97438 * 11 10 9 24 24 N 1.30906 * 108.38919 * 359.75795 * 23 11 10 25 25 H 0.97001 * 119.99764 * 359.97438 * 1 2 3 26 26 H 1.08000 * 126.24923 * 359.92497 * 10 9 7 27 27 H 0.96996 * 120.00201 * 0.02562 * 12 11 10 28 28 H 1.09006 * 109.71082 * 307.10182 * 17 15 13 29 29 H 1.08992 * 109.71658 * 67.73895 * 17 15 13 30 30 H 1.08998 * 109.54297 * 196.04061 * 19 18 17 31 31 H 1.09005 * 109.60771 * 75.83458 * 19 18 17 32 32 H 0.97003 * 115.08145 * 173.50874 * 22 20 19 33 33 H 1.08001 * 125.80214 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 1.2820 2.7465 -0.0006 5 1 3.1007 1.6964 1.2124 6 1 3.1007 1.6964 -1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3214 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0005 11 6 0.8578 -4.5385 0.0011 12 7 0.9892 -5.9383 0.0008 13 6 -0.1100 -6.7181 0.0020 14 8 -1.2126 -6.2124 0.0028 15 6 0.0306 -8.2186 0.0022 16 1 0.8343 -8.4971 0.6839 17 6 0.3975 -8.6813 -1.4074 18 16 0.3457 -10.5007 -1.4406 19 6 -1.3987 -10.8135 -1.0327 20 6 -1.8052 -9.9180 0.1018 21 8 -2.7805 -10.2521 0.7405 22 7 -1.2052 -8.8046 0.4714 23 6 -0.3512 -3.8199 0.0021 24 7 -0.0715 -2.5410 0.0073 25 1 -0.4850 0.8401 0.0004 26 1 2.9301 -3.8709 -0.0006 27 1 1.8708 -6.3427 0.0005 28 1 -0.3190 -8.2799 -2.1242 29 1 1.4009 -8.3374 -1.6578 30 1 -1.5229 -11.8553 -0.7374 31 1 -2.0210 -10.6046 -1.9030 32 1 -1.6619 -8.3016 1.1638 33 1 -1.3419 -4.2500 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341743124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:29 Heat of formation + Delta-G solvation = 1.263061 kcal Electronic energy + Delta-G solvation = -20868.522297 eV Core-core repulsion = 17442.918577 eV Total energy + Delta-G solvation = -3425.603720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.073 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.00274 -41.33243 -40.19943 -36.87300 -35.98598 -35.02325 -32.35996 -31.87630 -31.11875 -29.56575 -27.07161 -25.90976 -23.05490 -22.45428 -21.25782 -21.01509 -19.52682 -19.03958 -18.00190 -17.98845 -17.41404 -17.14954 -16.73567 -16.49576 -16.04989 -15.73902 -15.48653 -15.09986 -15.00977 -14.77898 -14.32516 -14.06600 -13.49009 -13.45387 -13.28820 -12.89012 -12.86685 -12.81413 -12.14506 -11.99294 -11.87003 -11.33057 -11.01877 -10.83133 -10.76974 -10.31685 -10.10657 -8.87869 -8.55095 -8.46601 -6.24508 0.34490 0.90866 1.20026 1.39058 1.41578 1.47564 1.56715 1.72266 1.86123 2.11713 2.32440 2.48317 2.87906 3.09322 3.11074 3.35857 3.67381 3.83475 4.05049 4.31231 4.37282 4.45470 4.55098 4.60960 5.00515 5.05383 5.29531 5.32409 5.40803 5.95831 6.09423 6.30151 6.63208 6.73999 6.83502 7.27122 7.46760 7.68453 8.52305 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.043268 B = 0.003014 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.968644 B = 9286.442427 C = 9736.881844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.006 4.006 3 Si 1.017 2.983 4 H -0.281 1.281 5 H -0.253 1.253 6 H -0.253 1.253 7 C -0.354 4.354 8 H 0.143 0.857 9 N -0.169 5.169 10 C -0.073 4.073 11 C -0.047 4.047 12 N -0.598 5.598 13 C 0.491 3.509 14 O -0.567 6.567 15 C 0.146 3.854 16 H 0.148 0.852 17 C -0.098 4.098 18 S -0.200 6.200 19 C -0.104 4.104 20 C 0.526 3.474 21 O -0.590 6.590 22 N -0.694 5.694 23 C -0.058 4.058 24 N -0.314 5.314 25 H 0.275 0.725 26 H 0.193 0.807 27 H 0.426 0.574 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.401 0.599 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.216 -17.117 -3.211 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.206 1.206 5 H -0.177 1.177 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.160 0.840 9 N 0.063 4.937 10 C -0.224 4.224 11 C -0.153 4.153 12 N -0.244 5.244 13 C 0.275 3.725 14 O -0.446 6.446 15 C 0.036 3.964 16 H 0.165 0.835 17 C -0.247 4.247 18 S 0.028 5.972 19 C -0.254 4.254 20 C 0.312 3.688 21 O -0.472 6.472 22 N -0.344 5.344 23 C -0.234 4.234 24 N -0.145 5.145 25 H 0.085 0.915 26 H 0.209 0.791 27 H 0.264 0.736 28 H 0.114 0.886 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.156 0.844 32 H 0.237 0.763 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.273 -16.560 -3.345 18.393 hybrid contribution -0.692 1.014 0.526 1.335 sum 6.580 -15.546 -2.819 17.115 Atomic orbital electron populations 1.70392 1.08428 1.29099 1.37444 1.26855 0.96417 1.04347 0.94158 0.84674 0.77544 0.73851 0.80301 1.20595 1.17727 1.17653 1.20590 0.93009 0.80893 1.54043 0.83972 1.44845 1.03589 1.04946 1.40361 1.22065 0.99003 0.83992 1.17325 1.17243 0.92563 0.83607 1.21885 1.42239 1.09692 1.02197 1.70265 1.21062 0.84161 0.89603 0.77679 1.90675 1.27641 1.75408 1.50842 1.20879 0.88616 0.87730 0.99203 0.83506 1.23809 1.09819 0.95121 0.95951 1.87299 1.11427 1.05695 1.92765 1.23657 0.97806 1.04495 0.99440 1.19805 0.82429 0.81187 0.85400 1.90814 1.29388 1.72411 1.54578 1.44747 1.24678 1.23307 1.41646 1.24161 0.99079 0.91007 1.09114 1.78184 0.92172 1.16748 1.27435 0.91491 0.79056 0.73575 0.88647 0.81762 0.82543 0.84433 0.76319 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.88 11.81 21.66 0.26 -46.63 16 2 C -0.01 -0.31 5.50 84.95 0.47 0.15 16 3 Si 1.02 37.47 29.55 68.60 2.03 39.50 16 4 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.35 -18.02 10.25 84.01 0.86 -17.16 16 8 H 0.14 6.16 7.83 -2.91 -0.02 6.14 16 9 N -0.17 -8.92 3.74 -190.01 -0.71 -9.63 16 10 C -0.07 -3.08 11.49 83.38 0.96 -2.12 16 11 C -0.05 -1.91 6.90 37.73 0.26 -1.65 16 12 N -0.60 -16.15 5.47 -303.92 -1.66 -17.81 16 13 C 0.49 13.40 6.88 87.66 0.60 14.00 16 14 O -0.57 -21.79 13.35 -3.10 -0.04 -21.83 16 15 C 0.15 2.50 3.33 44.55 0.15 2.65 16 16 H 0.15 1.53 8.14 -2.39 -0.02 1.52 16 17 C -0.10 -1.28 5.89 71.92 0.42 -0.85 16 18 S -0.20 -2.62 22.40 -56.49 -1.27 -3.89 16 19 C -0.10 -1.56 6.61 71.06 0.47 -1.09 16 20 C 0.53 12.23 7.65 87.94 0.67 12.90 16 21 O -0.59 -18.82 17.60 -3.03 -0.05 -18.87 16 22 N -0.69 -15.47 4.64 -454.78 -2.11 -17.58 16 23 C -0.06 -2.99 10.85 85.42 0.93 -2.06 16 24 N -0.31 -18.26 10.40 -56.47 -0.59 -18.85 16 25 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.19 6.03 8.06 -2.91 -0.02 6.01 16 27 H 0.43 6.96 8.83 -92.71 -0.82 6.14 16 28 H 0.09 1.50 8.13 -2.38 -0.02 1.48 16 29 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.40 10.54 7.85 -92.71 -0.73 9.82 16 33 H 0.17 8.60 5.92 -2.91 -0.02 8.59 16 Total: -1.00 -79.52 303.11 1.29 -78.23 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.36 Total: 32.58 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.79 Total: 4.76 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.81 Total: -110.49 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.09 Total: -40.70 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.27 Total: -3.89 kcal Total: -79.52 1.29 -78.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341743124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.496 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds