Wall clock time and date at job start Tue Mar 31 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00059 * 2 1 4 4 H 1.48495 * 109.47269 * 270.00284 * 3 2 1 5 5 H 1.48508 * 109.46911 * 30.00239 * 3 2 1 6 6 H 1.48502 * 109.47091 * 149.99812 * 3 2 1 7 7 C 1.37875 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00254 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.28392 * 313.06394 * 9 7 2 11 11 C 1.53501 * 114.20952 * 179.97438 * 9 7 2 12 12 N 1.47060 * 87.98710 * 220.14740 * 11 9 7 13 13 C 1.34778 * 136.05609 * 207.08659 * 12 11 9 14 14 O 1.21595 * 120.00102 * 359.97438 * 13 12 11 15 15 C 1.47524 * 119.99998 * 180.02562 * 13 12 11 16 16 C 1.36594 * 125.77230 * 180.02562 * 15 13 12 17 17 N 1.34808 * 106.84316 * 179.97438 * 16 15 13 18 18 C 1.46499 * 126.59848 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47547 * 124.99914 * 18 17 16 20 20 O 1.20833 * 119.99747 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00262 * 179.72203 * 19 18 17 22 22 N 1.40210 * 106.80988 * 0.24115 * 17 16 15 23 23 N 1.28763 * 108.36469 * 359.58592 * 22 17 16 24 24 C 1.47068 * 87.88815 * 27.34040 * 12 11 9 25 25 H 0.97002 * 120.00096 * 359.97438 * 1 2 3 26 26 H 0.96708 * 114.00078 * 46.92836 * 10 9 7 27 27 H 1.09007 * 113.46599 * 105.36434 * 11 9 7 28 28 H 1.09005 * 113.51722 * 334.93910 * 11 9 7 29 29 H 1.08007 * 126.57809 * 359.97213 * 16 15 13 30 30 H 1.09004 * 109.47039 * 5.00098 * 18 17 16 31 31 H 1.09000 * 109.47206 * 245.00641 * 18 17 16 32 32 H 0.96699 * 116.99771 * 180.27188 * 21 19 18 33 33 H 1.09001 * 113.46619 * 87.43412 * 24 12 11 34 34 H 1.08996 * 113.46942 * 217.88016 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.1921 -2.5400 0.9591 11 6 2.1488 -3.7443 0.0005 12 7 1.2073 -4.3594 -0.9471 13 6 0.8318 -5.6140 -1.2657 14 8 1.3299 -6.5623 -0.6903 15 6 -0.1826 -5.8367 -2.3134 16 6 -0.6485 -7.0519 -2.7282 17 7 -1.5586 -6.8125 -3.6935 18 6 -2.3267 -7.8138 -4.4375 19 6 -3.7983 -7.5162 -4.3082 20 8 -4.1677 -6.5648 -3.6613 21 8 -4.6985 -8.3043 -4.9167 22 7 -1.6242 -5.4210 -3.8528 23 7 -0.8051 -4.8783 -3.0206 24 6 0.8604 -3.0034 -1.3985 25 1 -0.4850 0.8401 0.0004 26 1 -0.3716 -1.7542 0.9563 27 1 2.1877 -4.2513 0.9647 28 1 3.1376 -3.5676 -0.4228 29 1 -0.3458 -8.0190 -2.3546 30 1 -2.1195 -8.8047 -4.0332 31 1 -2.0408 -7.7835 -5.4889 32 1 -5.6306 -8.0711 -4.8081 33 1 1.5093 -2.6305 -2.1910 34 1 -0.1982 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:22 Heat of formation + Delta-G solvation = -20.102259 kcal Electronic energy + Delta-G solvation = -23401.176650 eV Core-core repulsion = 19531.893590 eV Total energy + Delta-G solvation = -3869.283060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.19965 -40.59065 -39.33289 -37.26019 -36.68558 -34.82603 -33.90765 -32.09312 -30.98378 -29.62203 -28.26515 -25.46315 -24.94689 -23.55137 -22.87964 -21.60936 -20.18686 -18.75884 -18.68510 -17.62845 -17.32620 -16.86572 -16.57333 -15.84747 -15.54094 -15.47786 -14.96199 -14.58226 -14.41135 -14.05782 -13.66856 -13.58086 -13.02025 -12.59117 -12.40668 -12.07426 -11.97241 -11.88360 -11.46386 -11.33969 -11.17010 -10.99637 -10.81512 -10.46056 -10.39924 -10.14132 -9.77612 -9.21002 -9.20196 -8.70045 -8.27748 -7.77438 -6.30641 -4.41046 1.03898 1.61978 1.65838 2.01212 2.48728 3.21153 3.28696 3.31663 3.51110 3.75832 4.00038 4.25477 4.27670 4.37736 4.58504 4.78734 4.92439 5.02869 5.24460 5.63225 5.76356 5.95285 6.09648 6.16565 6.24586 6.49658 6.68694 6.71739 6.98732 7.21331 7.31782 7.72075 7.89708 8.04060 8.47201 8.61679 8.75508 9.29671 9.59305 10.76163 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.003596 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.909033 B = 7784.281032 C = 8497.947559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.073 0.927 9 C 0.238 3.762 10 O -0.572 6.572 11 C 0.109 3.891 12 N -0.616 5.616 13 C 0.619 3.381 14 O -0.565 6.565 15 C -0.075 4.075 16 C 0.087 3.913 17 N -0.374 5.374 18 C 0.140 3.860 19 C 0.463 3.537 20 O -0.477 6.477 21 O -0.514 6.514 22 N -0.045 5.045 23 N -0.184 5.184 24 C 0.079 3.921 25 H 0.274 0.726 26 H 0.394 0.606 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.207 0.793 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -15.564 -10.808 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.196 3.804 10 O -0.385 6.385 11 C -0.012 4.012 12 N -0.346 5.346 13 C 0.405 3.595 14 O -0.445 6.445 15 C -0.213 4.213 16 C -0.067 4.067 17 N -0.161 5.161 18 C 0.016 3.984 19 C 0.301 3.699 20 O -0.362 6.362 21 O -0.327 6.327 22 N -0.025 5.025 23 N -0.059 5.059 24 C -0.044 4.044 25 H 0.084 0.916 26 H 0.251 0.749 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.223 0.777 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.280 0.720 33 H 0.099 0.901 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.822 -15.395 -11.037 19.818 hybrid contribution -0.275 0.579 0.157 0.660 sum -6.097 -14.816 -10.880 19.367 Atomic orbital electron populations 1.69279 1.06183 1.28149 1.49958 1.25083 0.95004 0.99892 0.93106 0.86314 0.79740 0.81987 0.78343 1.20309 1.20955 1.19567 1.21402 0.93847 0.89728 1.52177 0.90932 1.19608 0.85379 0.90872 0.84546 1.86029 1.45180 1.48488 1.58777 1.23399 0.93674 0.92163 0.91999 1.49486 1.41263 1.04715 1.39144 1.16152 0.80694 0.81818 0.80788 1.90736 1.58111 1.41004 1.54696 1.21570 1.05928 0.89065 1.04758 1.23256 0.91422 1.01669 0.90328 1.49901 1.29487 1.08444 1.28230 1.21052 0.85143 0.91570 1.00625 1.23055 0.89446 0.80544 0.76838 1.90911 1.80742 1.27504 1.37007 1.84428 1.22059 1.55942 1.70233 1.82144 1.17958 0.83287 1.19093 1.74835 1.02617 1.26323 1.02129 1.24309 1.01647 0.76564 1.01855 0.91594 0.74919 0.91339 0.89391 0.77655 0.83592 0.84212 0.72008 0.90147 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.64 11.01 55.43 0.61 -23.03 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 3 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.53 -13.71 8.70 -34.44 -0.30 -14.01 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.24 5.96 1.58 -91.12 -0.14 5.81 16 10 O -0.57 -15.46 13.55 -35.23 -0.48 -15.94 16 11 C 0.11 2.46 8.02 -8.50 -0.07 2.39 16 12 N -0.62 -13.89 3.69 -186.27 -0.69 -14.58 16 13 C 0.62 13.24 8.07 -12.47 -0.10 13.14 16 14 O -0.57 -12.69 17.64 5.28 0.09 -12.59 16 15 C -0.08 -1.39 6.97 -83.55 -0.58 -1.97 16 16 C 0.09 1.14 11.27 -16.84 -0.19 0.95 16 17 N -0.37 -4.54 3.40 -62.24 -0.21 -4.75 16 18 C 0.14 0.85 7.13 -5.20 -0.04 0.81 16 19 C 0.46 3.90 8.36 36.00 0.30 4.21 16 20 O -0.48 -6.71 16.50 -18.76 -0.31 -7.02 16 21 O -0.51 -2.56 13.42 -39.26 -0.53 -3.09 16 22 N -0.04 -0.76 12.91 60.35 0.78 0.02 16 23 N -0.18 -3.62 10.80 32.85 0.35 -3.27 16 24 C 0.08 1.85 7.20 -8.36 -0.06 1.79 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.39 10.81 6.32 45.56 0.29 11.10 16 27 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 29 H 0.21 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.15 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.42 0.69 9.10 45.56 0.41 1.11 16 33 H 0.08 1.81 8.10 -51.93 -0.42 1.39 16 34 H 0.08 1.90 7.42 -51.93 -0.39 1.51 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -36.25 314.08 -3.70 -39.94 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -1.76 Total: 9.81 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -1.28 Total: 14.87 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.85 Total: -45.61 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.22 Total: -38.64 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.25 -3.70 -39.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.841 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds