Wall clock time and date at job start Tue Mar 31 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00031 * 2 1 4 4 H 1.48504 * 109.47083 * 269.99907 * 3 2 1 5 5 H 1.48498 * 109.47395 * 30.00010 * 3 2 1 6 6 H 1.48501 * 109.47242 * 150.00406 * 3 2 1 7 7 C 1.37880 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00284 * 185.92319 * 7 2 1 9 9 C 1.50701 * 119.99893 * 5.92116 * 7 2 1 10 10 H 1.08996 * 109.47456 * 333.75322 * 9 7 2 11 11 C 1.53004 * 109.47421 * 213.74997 * 9 7 2 12 12 C 1.50702 * 109.46870 * 64.99844 * 11 9 7 13 13 C 1.38234 * 119.99522 * 90.00043 * 12 11 9 14 14 C 1.38237 * 119.99885 * 180.02562 * 13 12 11 15 15 C 1.38245 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.38232 * 119.99844 * 0.25756 * 15 14 13 17 17 C 1.38230 * 120.00255 * 270.02658 * 12 11 9 18 18 C 1.50706 * 109.47136 * 93.75179 * 9 7 2 19 19 C 1.38248 * 119.92561 * 56.83286 * 18 9 7 20 20 C 1.38239 * 120.14036 * 179.97438 * 19 18 9 21 21 C 1.38546 * 120.03045 * 0.02562 * 20 19 18 22 22 C 1.39268 * 119.82634 * 359.97438 * 21 20 19 23 23 C 1.38229 * 119.92705 * 236.56208 * 18 9 7 24 24 O 1.36511 * 108.63902 * 180.02562 * 22 21 20 25 25 C 1.43988 * 105.48109 * 342.72115 * 24 22 21 26 26 O 1.36499 * 131.53343 * 179.97438 * 21 20 19 27 27 H 0.96998 * 120.00120 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46665 * 305.00332 * 11 9 7 29 29 H 1.08991 * 109.47167 * 185.00046 * 11 9 7 30 30 H 1.08004 * 120.00388 * 0.02562 * 13 12 11 31 31 H 1.08000 * 120.00272 * 179.97438 * 14 13 12 32 32 H 1.07994 * 119.99902 * 179.97438 * 15 14 13 33 33 H 1.08001 * 119.99940 * 179.72339 * 16 15 14 34 34 H 1.08005 * 120.00084 * 0.02562 * 17 12 11 35 35 H 1.08001 * 119.93275 * 359.96271 * 19 18 9 36 36 H 1.08000 * 119.98535 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.99184 * 359.97438 * 23 18 9 38 38 H 1.08995 * 110.57332 * 268.54960 * 25 24 22 39 39 H 1.09002 * 110.56851 * 145.68354 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0802 -1.1967 0.0960 9 6 1.2570 -2.4956 -0.1358 10 1 0.2402 -2.3710 0.2363 11 6 1.9684 -3.5792 0.6772 12 6 1.9030 -3.2322 2.1423 13 6 0.8434 -3.6763 2.9110 14 6 0.7831 -3.3576 4.2548 15 6 1.7821 -2.5943 4.8297 16 6 2.8386 -2.1454 4.0596 17 6 2.9022 -2.4695 2.7172 18 6 1.2148 -2.9024 -1.5863 19 6 2.3924 -3.0558 -2.2941 20 6 2.3589 -3.4292 -3.6247 21 6 1.1437 -3.6502 -4.2524 22 6 -0.0425 -3.4957 -3.5393 23 6 -0.0010 -3.1266 -2.2045 24 8 -1.0902 -3.7680 -4.3710 25 6 -0.5521 -3.6923 -5.7044 26 8 0.8393 -4.0188 -5.5309 27 1 -0.4850 0.8400 0.0004 28 1 3.0108 -3.6422 0.3649 29 1 1.4800 -4.5390 0.5090 30 1 0.0626 -4.2722 2.4618 31 1 -0.0450 -3.7041 4.8553 32 1 1.7348 -2.3450 5.8794 33 1 3.6168 -1.5454 4.5077 34 1 3.7296 -2.1219 2.1164 35 1 3.3406 -2.8833 -1.8066 36 1 3.2804 -3.5487 -4.1751 37 1 -0.9192 -3.0107 -1.6479 38 1 -0.6616 -2.6846 -6.1050 39 1 -1.0381 -4.4192 -6.3553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000169039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:15 Heat of formation + Delta-G solvation = -21.727051 kcal Electronic energy + Delta-G solvation = -23102.797491 eV Core-core repulsion = 19747.833581 eV Total energy + Delta-G solvation = -3354.963910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59017 -38.72210 -37.54472 -35.78314 -34.23610 -31.98207 -30.33261 -30.22386 -29.70095 -27.52053 -25.30121 -25.13442 -22.91001 -22.24508 -21.86397 -20.93686 -19.76014 -17.37873 -17.16291 -16.87354 -16.24556 -15.77768 -15.66336 -14.71310 -14.40632 -14.36126 -13.92176 -13.81034 -13.24588 -13.06054 -12.78605 -12.76687 -12.52234 -12.35044 -12.18144 -12.10379 -11.75511 -11.25053 -10.93879 -10.89453 -10.75996 -10.54358 -10.38355 -10.20813 -9.94099 -9.45504 -9.14170 -8.55719 -8.23541 -8.12068 -7.88214 -7.27251 -6.11624 -4.13729 1.88757 1.96861 2.08200 2.12538 3.24115 3.28551 3.33796 3.34968 3.88955 4.33650 4.40701 4.52641 4.96924 5.12635 5.12876 5.23108 5.48974 5.50360 5.62342 5.67447 5.76114 5.77600 6.03188 6.08480 6.11552 6.20726 6.22440 6.32495 6.53679 6.61700 6.70810 6.74034 6.81004 6.87890 7.08611 7.09772 7.13164 7.23023 7.34589 7.44579 7.71856 7.72822 7.78542 7.86569 8.24194 8.91132 9.49285 10.96865 Molecular weight = 296.12amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.005011 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.311837 B = 5586.636076 C = 6536.578328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.073 3.927 10 H 0.073 0.927 11 C -0.071 4.071 12 C -0.035 4.035 13 C -0.122 4.122 14 C -0.127 4.127 15 C -0.141 4.141 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.011 4.011 19 C -0.105 4.105 20 C -0.104 4.104 21 C -0.010 4.010 22 C 0.023 3.977 23 C -0.100 4.100 24 O -0.317 6.317 25 C 0.215 3.785 26 O -0.320 6.320 27 H 0.262 0.738 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -6.696 -1.181 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.054 3.946 10 H 0.091 0.909 11 C -0.108 4.108 12 C -0.035 4.035 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.159 4.159 16 C -0.146 4.146 17 C -0.111 4.111 18 C -0.012 4.012 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.053 4.053 22 C -0.020 4.020 23 C -0.119 4.119 24 O -0.234 6.234 25 C 0.102 3.898 26 O -0.237 6.237 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.091 0.909 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.682 -6.714 -1.307 7.044 hybrid contribution 0.124 1.329 -0.433 1.403 sum 1.807 -5.385 -1.740 5.941 Atomic orbital electron populations 1.69894 1.05956 1.26851 1.49059 1.24928 0.94750 0.99138 0.94287 0.86701 0.80110 0.83799 0.78142 1.20661 1.21296 1.19678 1.20869 0.93162 0.89501 1.50453 0.92304 1.18029 0.99629 0.92209 0.84728 0.90915 1.20778 1.00899 0.98238 0.90923 1.19791 0.93335 0.95001 0.95391 1.20970 0.98062 1.01242 0.93764 1.20943 0.98505 0.99739 0.95294 1.20904 0.95633 1.00252 0.99130 1.21028 0.98470 1.00428 0.94626 1.20990 0.99234 0.96897 0.93986 1.20633 0.90154 0.90632 0.99733 1.20777 0.99381 1.00232 0.91966 1.19986 0.93921 1.03246 0.95135 1.19612 0.95308 1.06287 0.84070 1.19854 0.84504 1.03795 0.93862 1.20128 0.99752 1.01909 0.90083 1.87293 1.32590 1.87368 1.16113 1.25404 0.77441 1.01532 0.85396 1.87242 1.27147 1.80597 1.28690 0.92781 0.92174 0.93339 0.86874 0.87206 0.87362 0.87165 0.86288 0.84994 0.86074 0.85430 0.90852 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.12 12.78 55.43 0.71 -23.41 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 3 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.50 -12.19 6.55 -34.44 -0.23 -12.42 16 8 H 0.06 1.40 7.50 -52.49 -0.39 1.00 16 9 C 0.07 1.60 2.09 -92.92 -0.19 1.41 16 10 H 0.07 1.82 7.00 -51.93 -0.36 1.46 16 11 C -0.07 -1.34 4.61 -27.88 -0.13 -1.46 16 12 C -0.04 -0.67 4.85 -104.63 -0.51 -1.17 16 13 C -0.12 -2.18 9.70 -39.58 -0.38 -2.56 16 14 C -0.13 -2.07 10.05 -39.58 -0.40 -2.46 16 15 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 16 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 17 C -0.09 -1.71 8.85 -39.58 -0.35 -2.06 16 18 C -0.01 -0.22 4.77 -104.62 -0.50 -0.72 16 19 C -0.11 -2.00 8.85 -39.58 -0.35 -2.35 16 20 C -0.10 -1.87 10.06 -39.47 -0.40 -2.26 16 21 C -0.01 -0.18 7.15 -39.09 -0.28 -0.46 16 22 C 0.02 0.47 7.15 -39.08 -0.28 0.19 16 23 C -0.10 -2.10 9.68 -39.47 -0.38 -2.48 16 24 O -0.32 -5.78 11.40 -45.72 -0.52 -6.30 16 25 C 0.21 3.07 8.89 101.05 0.90 3.97 16 26 O -0.32 -5.51 11.40 -45.69 -0.52 -6.03 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 29 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.14 7.73 -52.48 -0.41 1.73 16 35 H 0.13 2.32 7.74 -52.49 -0.41 1.91 16 36 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.13 2.70 7.94 -52.49 -0.42 2.28 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -28.59 333.80 -9.59 -38.18 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.90 Total: 5.30 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -4.37 Total: -28.25 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.71 Total: -23.41 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.04 Total: -12.34 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.59 -9.59 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000169039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds