Wall clock time and date at job start Tue Mar 31 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86808 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47022 * 239.99970 * 3 2 1 5 5 H 1.48500 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47111 * 119.99834 * 3 2 1 7 7 C 1.37875 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99869 * 185.12104 * 7 2 1 9 9 C 1.50692 * 119.99763 * 5.12190 * 7 2 1 10 10 H 1.08999 * 109.47625 * 26.21818 * 9 7 2 11 11 C 1.53000 * 109.46932 * 146.22100 * 9 7 2 12 12 C 1.50695 * 109.47050 * 294.99558 * 11 9 7 13 13 C 1.38235 * 120.00157 * 269.72302 * 12 11 9 14 14 C 1.38235 * 119.99858 * 179.76272 * 13 12 11 15 15 C 1.38239 * 119.99940 * 0.51767 * 14 13 12 16 16 C 1.38236 * 120.00110 * 359.74116 * 15 14 13 17 17 C 1.38235 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.50703 * 109.47003 * 266.21920 * 9 7 2 19 19 C 1.38256 * 119.92906 * 302.61418 * 18 9 7 20 20 C 1.38239 * 120.14337 * 179.97438 * 19 18 9 21 21 C 1.38541 * 120.03105 * 0.04670 * 20 19 18 22 22 C 1.39272 * 119.82713 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.93044 * 122.60013 * 18 9 7 24 24 O 1.36499 * 108.63872 * 180.02562 * 22 21 20 25 25 C 1.43990 * 105.48622 * 17.27444 * 24 22 21 26 26 O 1.36505 * 131.53255 * 179.97438 * 21 20 19 27 27 H 0.97001 * 120.00186 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47459 * 55.00153 * 11 9 7 29 29 H 1.09002 * 109.47281 * 174.99444 * 11 9 7 30 30 H 1.08004 * 119.99895 * 0.02562 * 13 12 11 31 31 H 1.08002 * 119.99885 * 180.22960 * 14 13 12 32 32 H 1.08001 * 119.99630 * 179.71935 * 15 14 13 33 33 H 1.07995 * 119.99758 * 179.97438 * 16 15 14 34 34 H 1.07995 * 119.99918 * 179.97438 * 17 16 15 35 35 H 1.08002 * 119.92756 * 359.97438 * 19 18 9 36 36 H 1.07997 * 119.98096 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.98460 * 359.97438 * 23 18 9 38 38 H 1.08999 * 110.56986 * 214.31848 * 25 24 22 39 39 H 1.09000 * 110.56751 * 91.44728 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0840 9 6 1.2557 -2.4965 -0.1154 10 1 0.3134 -2.3287 -0.6369 11 6 2.1005 -3.5025 -0.8997 12 6 2.2755 -3.0159 -2.3151 13 6 1.3646 -3.3805 -3.2889 14 6 1.5224 -2.9301 -4.5863 15 6 2.5971 -2.1240 -4.9122 16 6 3.5110 -1.7638 -3.9395 17 6 3.3505 -2.2103 -2.6411 18 6 0.9774 -3.0402 1.2623 19 6 2.0238 -3.2810 2.1332 20 6 1.7736 -3.7793 3.3981 21 6 0.4723 -4.0396 3.7959 22 6 -0.5818 -3.7974 2.9185 23 6 -0.3236 -3.2969 1.6527 24 8 -1.7512 -4.1301 3.5391 25 6 -1.4374 -4.1915 4.9430 26 8 -0.0367 -4.5245 4.9660 27 1 -0.4850 0.8400 -0.0004 28 1 3.0774 -3.6035 -0.4267 29 1 1.5990 -4.4702 -0.9075 30 1 0.5272 -4.0137 -3.0352 31 1 0.8087 -3.2119 -5.3463 32 1 2.7229 -1.7759 -5.9268 33 1 4.3508 -1.1344 -4.1943 34 1 4.0647 -1.9292 -1.8813 35 1 3.0390 -3.0794 1.8245 36 1 2.5929 -3.9660 4.0765 37 1 -1.1392 -3.1073 0.9706 38 1 -2.0238 -4.9688 5.4329 39 1 -1.6095 -3.2248 5.4165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000169043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:17 Heat of formation + Delta-G solvation = -21.860344 kcal Electronic energy + Delta-G solvation = -23109.011876 eV Core-core repulsion = 19754.042186 eV Total energy + Delta-G solvation = -3354.969690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55847 -38.74038 -37.52401 -35.75360 -34.23353 -31.99112 -30.31539 -30.24872 -29.67330 -27.51660 -25.28290 -25.13271 -22.89813 -22.21824 -21.88456 -20.93374 -19.76227 -17.35451 -17.13873 -16.84623 -16.25517 -15.77653 -15.64010 -14.71894 -14.42895 -14.38068 -13.89358 -13.80370 -13.21492 -13.03645 -12.80781 -12.76973 -12.49497 -12.34710 -12.16657 -12.10576 -11.76046 -11.21476 -10.95277 -10.88075 -10.77534 -10.53680 -10.38319 -10.21231 -9.95059 -9.48692 -9.12346 -8.55851 -8.26244 -8.08726 -7.89440 -7.24229 -6.11167 -4.14345 1.91353 1.99963 2.05827 2.10983 3.26358 3.30351 3.32752 3.35386 3.91704 4.34627 4.41658 4.52251 4.99355 5.14675 5.16007 5.23525 5.46717 5.48444 5.60207 5.70110 5.74673 5.79708 6.05368 6.08496 6.11623 6.20160 6.24670 6.30770 6.52849 6.60989 6.70821 6.74455 6.84089 6.87637 7.07177 7.10865 7.11625 7.23969 7.36210 7.42989 7.69262 7.70868 7.81418 7.87544 8.23931 8.89858 9.49238 10.97055 Molecular weight = 296.12amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004973 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.424951 B = 5628.945828 C = 6552.434092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.076 3.924 10 H 0.068 0.932 11 C -0.072 4.072 12 C -0.036 4.036 13 C -0.124 4.124 14 C -0.127 4.127 15 C -0.141 4.141 16 C -0.127 4.127 17 C -0.094 4.094 18 C -0.008 4.008 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.010 4.010 22 C 0.023 3.977 23 C -0.096 4.096 24 O -0.317 6.317 25 C 0.215 3.785 26 O -0.320 6.320 27 H 0.263 0.737 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -6.736 0.318 6.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.058 3.942 10 H 0.086 0.914 11 C -0.109 4.109 12 C -0.036 4.036 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.112 4.112 18 C -0.009 4.009 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.053 4.053 22 C -0.021 4.021 23 C -0.115 4.115 24 O -0.234 6.234 25 C 0.102 3.898 26 O -0.237 6.237 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.536 -6.762 0.417 6.947 hybrid contribution 0.070 1.296 0.398 1.358 sum 1.606 -5.466 0.815 5.755 Atomic orbital electron populations 1.69909 1.05941 1.26970 1.48912 1.24934 0.94759 0.99121 0.94350 0.86754 0.79840 0.83398 0.78739 1.19959 1.21375 1.20198 1.20840 0.92844 0.89335 1.51020 0.92340 1.17991 0.97723 0.91992 0.86528 0.91369 1.20797 1.00742 0.97836 0.91571 1.19809 0.93399 0.95262 0.95110 1.20984 0.99021 1.01193 0.92974 1.20948 0.97967 0.99125 0.96433 1.20911 0.96046 1.00219 0.98750 1.21038 0.99342 1.00401 0.93769 1.20999 0.98197 0.96557 0.95400 1.20590 0.90129 0.90561 0.99583 1.20759 1.00136 0.99769 0.91793 1.19966 0.92134 1.02756 0.97467 1.19604 0.95036 1.04668 0.86036 1.19853 0.83100 1.03029 0.96077 1.20108 0.98194 1.00474 0.92722 1.87287 1.30545 1.86441 1.19110 1.25404 0.80323 1.01425 0.82616 1.87247 1.22762 1.75957 1.37751 0.92743 0.92108 0.93275 0.86831 0.87174 0.87333 0.87146 0.86252 0.85096 0.86138 0.85464 0.86224 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.08 12.86 55.43 0.71 -23.37 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.20 6.57 -34.44 -0.23 -12.43 16 8 H 0.06 1.39 7.51 -52.49 -0.39 0.99 16 9 C 0.08 1.68 2.01 -92.93 -0.19 1.50 16 10 H 0.07 1.70 7.15 -51.93 -0.37 1.33 16 11 C -0.07 -1.35 4.60 -27.89 -0.13 -1.48 16 12 C -0.04 -0.67 4.84 -104.63 -0.51 -1.18 16 13 C -0.12 -2.17 9.70 -39.58 -0.38 -2.56 16 14 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 15 C -0.14 -2.23 10.05 -39.58 -0.40 -2.63 16 16 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 17 C -0.09 -1.71 8.85 -39.58 -0.35 -2.06 16 18 C -0.01 -0.16 4.77 -104.61 -0.50 -0.66 16 19 C -0.11 -2.04 8.85 -39.57 -0.35 -2.39 16 20 C -0.10 -1.90 10.06 -39.47 -0.40 -2.29 16 21 C -0.01 -0.20 7.15 -39.09 -0.28 -0.48 16 22 C 0.02 0.46 7.15 -39.08 -0.28 0.18 16 23 C -0.10 -2.05 9.68 -39.47 -0.38 -2.43 16 24 O -0.32 -5.85 11.40 -45.68 -0.52 -6.37 16 25 C 0.21 3.11 8.89 101.05 0.90 4.01 16 26 O -0.32 -5.58 11.40 -45.70 -0.52 -6.10 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.07 7.66 -51.93 -0.40 0.68 16 29 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.12 7.73 -52.49 -0.41 1.71 16 35 H 0.13 2.32 7.72 -52.49 -0.41 1.92 16 36 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.13 2.73 7.94 -52.49 -0.42 2.31 16 38 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -28.55 333.92 -9.59 -38.13 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.91 Total: 5.28 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -4.36 Total: -28.07 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.71 Total: -23.37 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.04 Total: -12.47 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.55 -9.59 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000169043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.271 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds