Wall clock time and date at job start Tue Mar 31 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36094 * 116.99811 * 2 1 4 4 C 1.38863 * 120.03993 * 86.05892 * 3 2 1 5 5 C 1.39138 * 119.85754 * 179.72927 * 4 3 2 6 6 C 1.38605 * 119.94447 * 0.02562 * 5 4 3 7 7 C 1.38260 * 120.16990 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.94108 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47170 * 261.31635 * 8 7 6 10 10 H 1.09002 * 109.47211 * 303.87204 * 9 8 7 11 11 O 1.42906 * 109.47399 * 63.86961 * 9 8 7 12 12 C 1.50691 * 109.47366 * 183.86818 * 9 8 7 13 13 H 1.07999 * 120.00131 * 0.02562 * 12 9 8 14 14 C 1.37882 * 120.00231 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00061 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00049 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47001 * 60.00008 * 16 14 12 18 18 H 1.48500 * 109.46979 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47227 * 299.99934 * 16 14 12 20 20 C 1.38596 * 120.12560 * 359.96667 * 7 6 5 21 21 O 1.36070 * 120.01214 * 180.02562 * 20 7 6 22 22 C 1.42905 * 116.99726 * 95.38800 * 21 20 7 23 23 O 1.36611 * 108.63047 * 180.02562 * 5 4 3 24 24 C 1.43983 * 105.48835 * 17.29116 * 23 5 4 25 25 O 1.36600 * 131.48011 * 359.74692 * 4 3 2 26 26 H 1.09002 * 109.47059 * 304.59124 * 1 2 3 27 27 H 1.08993 * 109.47426 * 64.59422 * 1 2 3 28 28 H 1.09007 * 109.47165 * 184.59450 * 1 2 3 29 29 H 1.08002 * 119.91255 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46728 * 21.30964 * 8 7 6 31 31 H 1.08998 * 109.47091 * 141.31601 * 8 7 6 32 32 H 0.96696 * 113.99882 * 59.99378 * 11 9 8 33 33 H 0.97001 * 120.00402 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.46626 * 185.09108 * 22 21 20 35 35 H 1.08996 * 109.47331 * 305.09136 * 22 21 20 36 36 H 1.09007 * 109.47001 * 65.09355 * 22 21 20 37 37 H 1.09000 * 110.57250 * 91.43369 * 24 23 5 38 38 H 1.08999 * 110.57454 * 214.16089 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.2887 1.8695 1.1993 5 6 2.9257 3.1065 1.1952 6 6 3.3163 3.6797 -0.0048 7 6 3.0741 3.0256 -1.1986 8 6 3.5005 3.6539 -2.5004 9 6 2.3005 4.3462 -3.1497 10 1 1.4912 3.6272 -3.2768 11 8 1.8588 5.4176 -2.3135 12 6 2.7032 4.8924 -4.4952 13 1 3.7138 4.7587 -4.8518 14 6 1.7814 5.5628 -5.2711 15 7 0.5506 5.7252 -4.8371 16 14 2.2804 6.2393 -6.9393 17 1 2.7383 5.1255 -7.8082 18 1 1.1157 6.9113 -7.5694 19 1 3.3836 7.2182 -6.7667 20 6 2.4401 1.7932 -1.2003 21 8 2.2035 1.1513 -2.3765 22 6 3.1639 0.1765 -2.7883 23 8 3.0459 3.5397 2.4853 24 6 2.8448 2.3720 3.3033 25 8 2.0088 1.5262 2.4914 26 1 -0.3633 0.5834 0.8460 27 1 -0.3634 0.4409 -0.9282 28 1 -0.3634 -1.0244 0.0823 29 1 3.8110 4.6397 -0.0073 30 1 4.2840 4.3874 -2.3103 31 1 3.8801 2.8816 -3.1693 32 1 2.5294 6.0963 -2.1568 33 1 -0.0978 6.1972 -5.3827 34 1 2.9041 -0.1929 -3.7803 35 1 4.1538 0.6316 -2.8178 36 1 3.1662 -0.6528 -2.0808 37 1 3.7960 1.8830 3.5132 38 1 2.3386 2.6371 4.2315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012418009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:28 Heat of formation + Delta-G solvation = -179.091714 kcal Electronic energy + Delta-G solvation = -24856.046984 eV Core-core repulsion = 21051.117215 eV Total energy + Delta-G solvation = -3804.929768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.118 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.26497 -41.01750 -39.11355 -38.07876 -37.28225 -36.85410 -34.19485 -32.82611 -30.79266 -29.77890 -28.22784 -27.53191 -27.31813 -26.08099 -23.82681 -23.61728 -22.18811 -19.66991 -19.32375 -18.99437 -18.64462 -18.12637 -17.24854 -16.93001 -16.62295 -16.52401 -16.22482 -16.21585 -15.74939 -15.53040 -15.31442 -15.06819 -14.83390 -14.38604 -14.02381 -13.76828 -13.55379 -13.28571 -13.13495 -12.82877 -12.77180 -12.59627 -12.42205 -12.32688 -11.93637 -11.64404 -11.51782 -10.96617 -10.80757 -10.62804 -10.16471 -9.64060 -8.98944 -8.06988 -6.33052 -0.16621 -0.07656 1.44417 1.46151 1.53923 1.57127 2.05177 2.36091 2.44126 2.69196 2.90870 3.18871 3.49403 3.74917 3.87697 3.97611 4.04239 4.29570 4.30071 4.33721 4.41066 4.43706 4.47860 4.52116 4.58307 4.68035 4.74707 4.77964 4.81248 4.97441 5.02893 5.29264 5.30466 5.68953 5.82461 5.89076 6.13133 6.14612 6.56218 6.79336 7.39981 7.64094 8.97044 Molecular weight = 296.12amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.004781 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.012733 B = 5855.256381 C = 6555.208197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.081 3.919 4 C 0.002 3.998 5 C 0.038 3.962 6 C -0.084 4.084 7 C -0.061 4.061 8 C -0.084 4.084 9 C 0.242 3.758 10 H 0.017 0.983 11 O -0.580 6.580 12 C -0.582 4.582 13 H 0.065 0.935 14 C 0.025 3.975 15 N -0.903 5.903 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.081 3.919 21 O -0.338 6.338 22 C 0.033 3.967 23 O -0.314 6.314 24 C 0.202 3.798 25 O -0.315 6.315 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.126 0.874 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.356 0.644 33 H 0.259 0.741 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -9.902 13.071 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.036 3.964 4 C -0.043 4.043 5 C -0.006 4.006 6 C -0.103 4.103 7 C -0.062 4.062 8 C -0.121 4.121 9 C 0.185 3.815 10 H 0.035 0.965 11 O -0.384 6.384 12 C -0.620 4.620 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.540 5.540 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.189 1.189 20 C 0.036 3.964 21 O -0.255 6.255 22 C -0.061 4.061 23 O -0.231 6.231 24 C 0.092 3.908 25 O -0.232 6.232 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.144 0.856 29 H 0.176 0.824 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.201 0.799 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.737 -10.317 13.121 17.650 hybrid contribution 0.288 0.710 -0.658 1.010 sum 6.025 -9.608 12.463 16.850 Atomic orbital electron populations 1.23191 0.77293 1.04901 1.00517 1.85965 1.21555 1.23499 1.94150 1.18011 1.02396 0.87599 0.88437 1.19926 1.03184 0.95081 0.86120 1.19631 1.01573 0.92693 0.86733 1.20013 1.01934 1.01529 0.86823 1.20039 0.96717 0.93421 0.95985 1.21165 0.99699 0.99807 0.91447 1.19102 0.90351 0.84984 0.87075 0.96534 1.86542 1.44097 1.36360 1.71378 1.22048 0.97656 1.38155 1.04093 0.91670 1.25910 0.94587 0.95767 1.01454 1.70233 1.04335 1.40913 1.38502 0.85637 0.77732 0.78782 0.79553 1.19320 1.21466 1.18929 1.18461 1.01042 0.92451 0.84459 1.86102 1.49141 1.55605 1.34658 1.23198 0.91627 0.89883 1.01372 1.87361 1.88867 1.33876 1.12979 1.26221 0.96158 0.76210 0.92208 1.87345 1.62292 1.60790 1.12748 0.93683 0.94103 0.85611 0.82432 0.89637 0.90551 0.79913 0.93193 0.87253 0.92786 0.92595 0.87372 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.13 113.37 1.26 2.21 16 2 O -0.33 -11.09 10.20 -80.01 -0.82 -11.91 16 3 C 0.08 2.87 5.75 22.61 0.13 3.00 16 4 C 0.00 0.07 7.08 22.64 0.16 0.23 16 5 C 0.04 1.23 7.15 22.57 0.16 1.40 16 6 C -0.08 -2.80 9.68 22.36 0.22 -2.59 16 7 C -0.06 -2.25 4.89 -19.77 -0.10 -2.35 16 8 C -0.08 -3.31 4.65 29.85 0.14 -3.17 16 9 C 0.24 12.37 2.82 29.84 0.08 12.45 16 10 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 11 O -0.58 -30.01 12.46 -148.98 -1.86 -31.86 16 12 C -0.58 -31.44 8.76 25.60 0.22 -31.22 16 13 H 0.07 3.32 7.74 -2.91 -0.02 3.29 16 14 C 0.02 1.39 5.40 84.66 0.46 1.84 16 15 N -0.90 -54.70 12.84 21.45 0.28 -54.42 16 16 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 C 0.08 3.04 5.71 22.54 0.13 3.17 16 21 O -0.34 -12.89 9.42 -80.34 -0.76 -13.65 16 22 C 0.03 0.92 10.90 113.37 1.24 2.15 16 23 O -0.31 -8.62 11.41 -77.35 -0.88 -9.51 16 24 C 0.20 3.96 8.89 113.37 1.01 4.97 16 25 O -0.32 -8.98 11.41 -76.94 -0.88 -9.86 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.16 4.56 8.04 -2.91 -0.02 4.54 16 30 H 0.09 2.99 8.01 -2.39 -0.02 2.97 16 31 H 0.08 2.94 7.22 -2.39 -0.02 2.92 16 32 H 0.36 15.83 9.04 -74.06 -0.67 15.16 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.05 1.40 7.78 -2.39 -0.02 1.38 16 36 H 0.06 1.43 8.14 -2.38 -0.02 1.42 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -72.68 332.67 2.65 -70.03 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.42 Total: 24.00 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 5.11 Total: -7.90 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.28 Total: -54.42 kcal Atomic # 8 Polarization: -71.59 SS G_CDS: -5.19 Total: -76.78 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.68 2.65 -70.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012418009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.057 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds