Wall clock time and date at job start Tue Mar 31 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 C 1.50701 * 109.47064 * 269.67433 * 8 7 5 10 10 O 1.20826 * 119.99939 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.45192 * 117.00018 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47278 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99756 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00197 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99793 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47086 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99869 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99905 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00159 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47459 * 89.99742 * 21 19 17 23 23 H 1.48503 * 109.47307 * 210.00247 * 21 19 17 24 24 H 1.48508 * 109.46837 * 329.99649 * 21 19 17 25 25 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 26 26 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 27 27 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 28 28 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 29 29 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 30 30 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 31 31 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 32 32 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 33 33 H 1.09001 * 109.47630 * 300.00318 * 12 11 9 34 34 H 1.08998 * 109.47321 * 60.00129 * 12 11 9 35 35 H 0.96999 * 119.99738 * 0.02562 * 15 13 12 36 36 H 1.08992 * 109.47623 * 300.00311 * 16 15 13 37 37 H 1.08998 * 109.46832 * 60.00650 * 16 15 13 38 38 H 0.97000 * 119.99889 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 6 1.8261 -3.0712 -1.4210 10 8 2.0314 -2.3136 -2.3396 11 8 1.4806 -4.3449 -1.6660 12 6 1.3720 -4.7423 -3.0582 13 6 0.9775 -6.1947 -3.1368 14 8 0.8045 -6.8319 -2.1194 15 7 0.8160 -6.7852 -4.3375 16 6 0.4331 -8.1972 -4.4137 17 6 0.3202 -8.6097 -5.8587 18 1 0.5147 -7.8920 -6.6420 19 6 -0.0314 -9.9034 -6.1809 20 7 -0.1294 -10.2635 -7.4421 21 14 -0.3685 -11.1446 -4.8263 22 1 -1.8089 -11.1064 -4.4671 23 1 -0.0129 -12.5056 -5.3022 24 1 0.4485 -10.8085 -3.6326 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5143 28 1 5.2201 -1.5548 -1.0150 29 1 5.6637 -0.7851 0.5274 30 1 4.7628 -2.3202 0.5255 31 1 1.0054 -2.7038 0.5144 32 1 2.7232 -3.1702 0.5128 33 1 0.6147 -4.1333 -3.5520 34 1 2.3326 -4.5992 -3.5530 35 1 0.9540 -6.2755 -5.1511 36 1 1.1905 -8.8063 -3.9205 37 1 -0.5274 -8.3404 -3.9186 38 1 -0.3764 -11.1737 -7.6687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021494009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:04 Heat of formation + Delta-G solvation = -68.843438 kcal Electronic energy + Delta-G solvation = -22872.639264 eV Core-core repulsion = 19104.782970 eV Total energy + Delta-G solvation = -3767.856293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.22720 -40.72269 -38.94992 -36.73327 -35.57784 -34.42513 -34.01341 -32.47270 -30.88728 -29.41132 -28.95734 -27.72825 -26.93196 -23.06839 -22.10707 -21.05302 -20.38108 -20.17377 -18.25504 -17.71538 -17.68212 -17.20728 -16.85577 -16.46754 -15.63842 -15.17524 -15.13990 -14.64924 -14.33046 -14.11814 -13.80320 -13.48232 -13.47375 -13.25714 -13.17712 -12.94964 -12.66898 -12.55823 -12.43259 -12.39910 -12.08668 -11.29084 -11.10757 -10.89513 -10.82377 -10.79316 -10.16169 -10.03483 -9.58548 -9.52759 -9.39197 -8.85321 -8.32018 -6.27310 -4.30682 1.09753 1.74680 1.96353 2.42397 2.78597 2.96759 3.22632 3.29675 3.36911 3.80927 3.83348 4.08063 4.27683 4.28047 4.46097 4.67321 4.87751 4.89775 4.98814 5.04656 5.06611 5.08974 5.11254 5.15931 5.16559 5.26411 5.33714 5.40241 5.59748 5.80468 6.19103 6.68594 6.96607 7.04091 7.27707 7.51685 7.98456 8.00373 8.36897 8.63274 8.75355 9.31519 10.84441 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.036416 B = 0.002444 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.701003 B =11452.507155 C =11526.086560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.038 3.962 3 N -0.366 5.366 4 O 0.098 5.902 5 C -0.007 4.007 6 C -0.079 4.079 7 C -0.199 4.199 8 C -0.031 4.031 9 C 0.460 3.540 10 O -0.501 6.501 11 O -0.329 6.329 12 C 0.050 3.950 13 C 0.502 3.498 14 O -0.537 6.537 15 N -0.699 5.699 16 C 0.222 3.778 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 18.691 16.306 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 N -0.073 5.073 4 O 0.034 5.966 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.203 4.203 8 C -0.069 4.069 9 C 0.302 3.698 10 O -0.388 6.388 11 O -0.244 6.244 12 C -0.028 4.028 13 C 0.285 3.715 14 O -0.414 6.414 15 N -0.349 5.349 16 C 0.101 3.899 17 C -0.585 4.585 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.331 19.574 16.589 26.427 hybrid contribution -0.259 -1.201 -0.167 1.240 sum 6.072 18.373 16.422 25.379 Atomic orbital electron populations 1.20203 0.85871 1.04125 1.03424 1.23380 0.98921 0.88200 1.01649 1.73838 0.89172 1.23738 1.20547 1.84809 1.21723 1.22213 1.67808 1.24245 0.98037 0.83992 1.00819 1.20428 0.90038 0.98594 1.04599 1.20190 0.92177 0.95630 1.12302 1.19427 1.06269 0.89917 0.91288 1.23593 0.73511 0.80128 0.92601 1.90701 1.45644 1.55932 1.46519 1.86543 1.79496 1.28919 1.29416 1.22831 1.04175 0.95333 0.80439 1.19920 0.79131 0.87545 0.84903 1.90701 1.50895 1.65219 1.34605 1.46076 1.68132 1.14266 1.06473 1.19557 0.95543 0.76452 0.98387 1.21061 1.49606 0.97810 0.89980 0.90134 1.24794 0.94096 0.98044 0.95654 1.69879 1.46872 1.19246 1.16730 0.86812 0.79592 0.80693 0.82566 1.19782 1.20827 1.18457 0.89858 0.90244 0.90099 0.88950 0.89472 0.88869 0.85972 0.86045 0.88308 0.88283 0.76690 0.95402 0.95856 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.39 36.00 0.37 -0.25 16 2 C 0.04 0.40 7.33 -82.10 -0.60 -0.20 16 3 N -0.37 -4.48 12.07 33.42 0.40 -4.07 16 4 O 0.10 1.08 11.20 17.18 0.19 1.27 16 5 C -0.01 -0.06 7.49 -35.30 -0.26 -0.33 16 6 C -0.08 -0.42 10.30 36.00 0.37 -0.04 16 7 C -0.20 -1.91 4.82 -104.42 -0.50 -2.41 16 8 C -0.03 -0.25 6.14 -29.03 -0.18 -0.43 16 9 C 0.46 5.37 7.95 36.01 0.29 5.66 16 10 O -0.50 -7.10 15.78 -18.75 -0.30 -7.39 16 11 O -0.33 -4.50 9.75 -45.90 -0.45 -4.95 16 12 C 0.05 0.68 5.94 36.01 0.21 0.89 16 13 C 0.50 9.14 7.91 -10.98 -0.09 9.05 16 14 O -0.54 -11.86 16.50 -14.10 -0.23 -12.09 16 15 N -0.70 -13.42 5.55 -61.48 -0.34 -13.76 16 16 C 0.22 5.26 4.50 -5.20 -0.02 5.24 16 17 C -0.55 -14.56 9.83 -34.44 -0.34 -14.90 16 18 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 19 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 21 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.34 7.44 -51.93 -0.39 -0.05 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 0.67 7.44 -51.93 -0.39 0.28 16 33 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 34 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 35 H 0.40 6.61 8.32 -40.82 -0.34 6.27 16 36 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -35.23 340.33 -5.17 -40.40 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.84 Total: 0.09 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.85 Total: 4.34 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.84 Total: -43.00 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.78 Total: -23.16 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.23 -5.17 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021494009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.440 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds