Wall clock time and date at job start Tue Mar 31 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86792 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47366 * 274.65189 * 3 2 1 5 5 H 1.48497 * 109.47465 * 34.65493 * 3 2 1 6 6 H 1.48503 * 109.47330 * 154.65197 * 3 2 1 7 7 C 1.39872 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99380 * 162.12460 * 7 2 1 9 9 C 1.41134 * 120.00097 * 342.12395 * 7 2 1 10 10 C 1.40894 * 120.15238 * 155.08555 * 9 7 2 11 11 C 1.36339 * 119.83293 * 180.02562 * 10 9 7 12 12 C 1.39560 * 120.16143 * 359.97438 * 11 10 9 13 13 N 1.38867 * 119.83981 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99920 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.47095 * 34.99203 * 14 13 12 16 16 C 1.50706 * 109.46551 * 275.00076 * 14 13 12 17 17 N 1.34780 * 119.99978 * 180.02562 * 16 14 13 18 18 O 1.21280 * 120.00574 * 359.97438 * 16 14 13 19 19 C 1.50696 * 109.47129 * 155.00377 * 14 13 12 20 20 C 1.38233 * 120.00094 * 39.72051 * 19 14 13 21 21 C 1.38240 * 119.99528 * 179.79260 * 20 19 14 22 22 C 1.38229 * 120.00264 * 0.43820 * 21 20 19 23 23 C 1.38243 * 120.00065 * 359.81683 * 22 21 20 24 24 C 1.38231 * 119.99795 * 359.97438 * 23 22 21 25 25 C 1.39560 * 120.32077 * 0.26130 * 12 11 10 26 26 C 1.36344 * 120.16043 * 359.47857 * 25 12 11 27 27 H 0.96998 * 119.99836 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.08017 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.91437 * 179.97438 * 11 10 9 30 30 H 0.97002 * 119.99717 * 0.02562 * 13 12 11 31 31 H 0.97006 * 119.99274 * 359.97438 * 17 16 14 32 32 H 0.96998 * 120.00176 * 179.97438 * 17 16 14 33 33 H 1.07995 * 120.00140 * 359.97438 * 20 19 14 34 34 H 1.08002 * 119.99562 * 180.27799 * 21 20 19 35 35 H 1.08004 * 120.00303 * 179.83253 * 22 21 20 36 36 H 1.07995 * 120.00157 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.99981 * 179.97438 * 24 23 22 38 38 H 1.08002 * 119.92157 * 179.72052 * 25 12 11 39 39 H 1.07994 * 120.08278 * 180.23688 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3923 2.1031 -1.3954 5 1 1.4933 2.6222 0.7961 6 1 3.5864 1.4137 0.5994 7 6 2.0083 -1.2114 0.0005 8 1 3.0492 -1.2341 -0.2865 9 6 1.3537 -2.4039 0.3763 10 6 1.8227 -3.6468 -0.0931 11 6 1.1850 -4.7948 0.2735 12 6 0.0707 -4.7408 1.1120 13 7 -0.5741 -5.9141 1.4807 14 6 -1.7445 -5.8614 2.3603 15 1 -2.3234 -4.9642 2.1413 16 6 -1.2918 -5.8288 3.7973 17 7 -2.2023 -5.7791 4.7898 18 8 -0.1081 -5.8481 4.0609 19 6 -2.6005 -7.0803 2.1309 20 6 -2.0082 -8.3131 1.9306 21 6 -2.7936 -9.4319 1.7245 22 6 -4.1710 -9.3162 1.7095 23 6 -4.7632 -8.0824 1.9045 24 6 -3.9779 -6.9644 2.1149 25 6 -0.4025 -3.5128 1.5768 26 6 0.2284 -2.3572 1.2226 27 1 -0.4850 0.8400 0.0004 28 1 2.6852 -3.6901 -0.7416 29 1 1.5432 -5.7483 -0.0858 30 1 -0.2494 -6.7685 1.1560 31 1 -3.1491 -5.7640 4.5790 32 1 -1.9110 -5.7584 5.7148 33 1 -0.9320 -8.4028 1.9382 34 1 -2.3309 -10.3959 1.5725 35 1 -4.7846 -10.1898 1.5457 36 1 -5.8393 -7.9919 1.8924 37 1 -4.4406 -6.0004 2.2669 38 1 -1.2681 -3.4782 2.2217 39 1 -0.1366 -1.4080 1.5861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026221375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:43 Heat of formation + Delta-G solvation = 16.246111 kcal Electronic energy + Delta-G solvation = -22733.759310 eV Core-core repulsion = 19412.734791 eV Total energy + Delta-G solvation = -3321.024519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22002 -38.61933 -37.64410 -35.05676 -33.63850 -33.07487 -31.27606 -31.02695 -29.44812 -28.57102 -26.54536 -24.18563 -22.71287 -22.21861 -21.19181 -20.57143 -19.49723 -17.46921 -17.30872 -17.16926 -16.61671 -16.06761 -15.24636 -15.15871 -14.85812 -14.42102 -14.26887 -13.81166 -13.64912 -13.47103 -12.87321 -12.79249 -12.58846 -12.37351 -11.91113 -11.71049 -11.43747 -11.21493 -11.08159 -10.99126 -10.83312 -10.50936 -10.03748 -9.68579 -9.51440 -9.27734 -9.21664 -9.10106 -8.85783 -8.53073 -7.44775 -6.61691 -6.38867 -4.00174 1.11859 1.21986 2.87169 2.93446 3.15012 3.17377 3.22650 3.33533 3.56306 3.67460 4.08590 4.35840 4.56085 4.71932 4.80851 4.81493 4.94981 5.17956 5.29290 5.33927 5.49554 5.75023 5.85371 5.88792 6.25015 6.27774 6.32169 6.34242 6.38027 6.78572 6.85515 6.92560 6.95346 7.23281 7.38434 7.42398 7.57672 7.71849 7.85010 8.18456 8.28427 8.45890 8.52559 8.66007 8.81137 9.09701 9.18235 10.40534 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.003453 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.469269 B = 8107.629512 C = 8211.573499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.077 3.923 10 C -0.186 4.186 11 C -0.152 4.152 12 C 0.097 3.903 13 N -0.730 5.730 14 C 0.187 3.813 15 H 0.108 0.892 16 C 0.498 3.502 17 N -0.861 5.861 18 O -0.517 6.517 19 C -0.083 4.083 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.160 4.160 26 C -0.124 4.124 27 H 0.275 0.725 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.389 0.611 31 H 0.396 0.604 32 H 0.396 0.604 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 -13.757 5.630 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.206 4.206 11 C -0.174 4.174 12 C 0.001 3.999 13 N -0.364 5.364 14 C 0.075 3.925 15 H 0.125 0.875 16 C 0.280 3.720 17 N -0.426 5.426 18 O -0.390 6.390 19 C -0.084 4.084 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.181 4.181 26 C -0.143 4.143 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.224 0.776 31 H 0.224 0.776 32 H 0.226 0.774 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.084 -13.491 5.651 18.353 hybrid contribution 0.035 0.517 0.198 0.555 sum -11.049 -12.974 5.849 18.018 Atomic orbital electron populations 1.69860 1.07356 1.28514 1.37851 1.25790 0.94655 1.00858 0.92699 0.86416 0.80796 0.81346 0.78765 1.19873 1.20316 1.18670 1.19367 0.97895 0.91375 1.41108 0.90935 1.17484 0.92376 0.92000 0.90730 1.20541 1.02637 0.92595 1.04834 1.19758 0.97449 0.97137 1.03013 1.17238 0.95844 0.85073 1.01730 1.43539 1.31886 1.06708 1.54306 1.19353 0.88619 0.96977 0.87544 0.87487 1.21701 0.86476 0.75166 0.88650 1.43943 1.10023 1.79175 1.09427 1.90753 1.16831 1.47293 1.84133 1.19782 0.93793 0.94169 1.00609 1.21022 1.00274 0.92099 0.98926 1.21141 0.93914 0.98464 0.99925 1.21178 0.94912 0.97661 1.00155 1.21115 0.99820 0.92610 0.99973 1.21040 0.92563 0.99124 1.00170 1.19990 1.01260 0.92100 1.04764 1.20886 0.98193 0.96325 0.98944 0.91409 0.88955 0.89509 0.77637 0.77598 0.77369 0.85846 0.85935 0.86104 0.85817 0.85545 0.90048 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.98 55.54 0.61 -21.07 16 2 C 0.07 1.97 5.13 -17.33 -0.09 1.88 16 3 Si 0.90 19.57 29.60 -169.99 -5.03 14.54 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.96 9.03 -37.87 -0.34 -13.30 16 8 H 0.07 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.08 2.14 5.57 -106.79 -0.59 1.54 16 10 C -0.19 -4.76 9.74 -39.26 -0.38 -5.14 16 11 C -0.15 -3.55 9.82 -39.77 -0.39 -3.94 16 12 C 0.10 2.21 6.55 -83.69 -0.55 1.66 16 13 N -0.73 -13.33 4.68 -54.29 -0.25 -13.58 16 14 C 0.19 2.83 2.29 -70.23 -0.16 2.67 16 15 H 0.11 1.63 6.30 -51.93 -0.33 1.30 16 16 C 0.50 7.95 7.31 -10.98 -0.08 7.87 16 17 N -0.86 -9.49 8.77 31.22 0.27 -9.22 16 18 O -0.52 -10.83 17.19 5.56 0.10 -10.73 16 19 C -0.08 -1.00 4.74 -104.62 -0.50 -1.50 16 20 C -0.10 -1.23 9.06 -39.58 -0.36 -1.59 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.11 -1.09 9.51 -39.58 -0.38 -1.47 16 25 C -0.16 -3.86 9.07 -39.77 -0.36 -4.22 16 26 C -0.12 -3.33 8.63 -39.26 -0.34 -3.67 16 27 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 28 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.39 6.50 6.85 -40.82 -0.28 6.22 16 31 H 0.40 3.16 8.55 -40.82 -0.35 2.81 16 32 H 0.40 3.92 8.93 -40.82 -0.36 3.56 16 33 H 0.12 1.48 6.90 -52.49 -0.36 1.12 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 1.01 8.04 -52.49 -0.42 0.58 16 38 H 0.08 1.78 6.14 -52.49 -0.32 1.46 16 39 H 0.12 3.26 6.18 -52.49 -0.32 2.94 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -33.09 333.52 -9.41 -42.50 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -4.41 Total: 16.13 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -5.71 Total: -23.58 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.63 Total: -43.87 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.10 Total: -10.73 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.09 -9.41 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026221375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.743 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds