Wall clock time and date at job start Tue Mar 31 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00376 * 2 1 4 4 C 1.50700 * 109.47167 * 66.04666 * 3 2 1 5 5 O 1.21283 * 120.00001 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99893 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99497 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46958 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99795 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00282 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99429 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99983 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47193 * 90.00358 * 12 10 8 14 14 H 1.48504 * 109.47016 * 210.00154 * 12 10 8 15 15 H 1.48500 * 109.47115 * 330.00138 * 12 10 8 16 16 C 1.46909 * 110.99581 * 236.04785 * 2 1 3 17 17 C 1.50699 * 109.46961 * 293.95307 * 16 2 1 18 18 C 1.38237 * 120.00455 * 104.99910 * 17 16 2 19 19 C 1.38224 * 120.01313 * 179.74163 * 18 17 16 20 20 C 1.38264 * 120.02445 * 0.26351 * 19 18 17 21 21 C 1.38190 * 120.01695 * 0.02562 * 20 19 18 22 22 C 1.38328 * 120.01174 * 285.27645 * 17 16 2 23 23 Cl 1.73603 * 120.01189 * 0.02562 * 22 17 16 24 24 H 1.08993 * 109.47534 * 183.95445 * 1 2 3 25 25 H 1.09002 * 109.46770 * 303.95615 * 1 2 3 26 26 H 1.09006 * 109.47418 * 63.94914 * 1 2 3 27 27 H 1.08999 * 109.47131 * 186.04751 * 3 2 1 28 28 H 1.09000 * 109.47084 * 306.04639 * 3 2 1 29 29 H 0.96995 * 120.00344 * 359.97438 * 6 4 3 30 30 H 1.08999 * 109.47229 * 299.99906 * 7 6 4 31 31 H 1.09000 * 109.47471 * 60.00091 * 7 6 4 32 32 H 0.97009 * 119.99433 * 179.97438 * 11 10 8 33 33 H 1.08993 * 109.47031 * 173.95800 * 16 2 1 34 34 H 1.08991 * 109.47270 * 53.95292 * 16 2 1 35 35 H 1.08002 * 119.99593 * 0.02780 * 18 17 16 36 36 H 1.07996 * 119.98813 * 180.23496 * 19 18 17 37 37 H 1.08004 * 119.98845 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00844 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0056 1.4453 2.1411 6 7 2.0191 3.3198 1.5237 7 6 1.6711 3.9764 2.7862 8 6 2.2122 5.3829 2.7867 9 1 2.7609 5.7507 1.9322 10 6 2.0069 6.2002 3.8780 11 7 1.3392 5.7521 4.9186 12 14 2.6770 7.9439 3.8783 13 1 1.6603 8.8650 3.3099 14 1 2.9921 8.3528 5.2707 15 1 3.9113 7.9999 3.0545 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9730 18 6 0.6295 -2.7753 -1.7401 19 6 0.3041 -4.1106 -1.5929 20 6 0.9821 -4.8907 -0.6746 21 6 1.9852 -4.3358 0.0972 22 6 2.3116 -2.9991 -0.0500 23 17 3.5713 -2.3011 0.9193 24 1 -0.3634 -1.0251 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3634 0.4513 -0.9233 27 1 3.0798 1.3442 -0.1083 28 1 1.5612 1.9273 -0.8309 29 1 2.5251 3.8007 0.8503 30 1 0.5868 4.0038 2.8947 31 1 2.1054 3.4201 3.6169 32 1 1.1951 6.3270 5.6866 33 1 3.0796 -0.6612 -1.1757 34 1 1.5610 -0.3873 -2.0628 35 1 0.0998 -2.1665 -2.4579 36 1 -0.4803 -4.5445 -2.1952 37 1 0.7271 -5.9339 -0.5597 38 1 2.5149 -4.9454 0.8142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048272880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:36 Heat of formation + Delta-G solvation = -13.286361 kcal Electronic energy + Delta-G solvation = -20883.596216 eV Core-core repulsion = 17558.858223 eV Total energy + Delta-G solvation = -3324.737993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83712 -38.88105 -36.52294 -36.34088 -34.08601 -32.31064 -31.93638 -30.88218 -28.58424 -27.13013 -26.50678 -23.43200 -22.85667 -22.11369 -20.94511 -19.58113 -17.37075 -16.92005 -16.05017 -15.97023 -15.74346 -15.25956 -15.11444 -14.70683 -14.26253 -14.03840 -13.92202 -13.59374 -13.30269 -12.92486 -12.45715 -12.31226 -11.94145 -11.91467 -11.72054 -11.51745 -11.41790 -11.37193 -11.18121 -10.94569 -10.82718 -10.67032 -10.29097 -9.37231 -9.14525 -8.96816 -8.78901 -8.70772 -8.15894 -7.80771 -6.14786 -4.21516 0.98180 1.04135 2.20623 3.24978 3.30868 3.33107 3.35270 3.45018 3.85859 4.29761 4.46210 4.49839 4.59566 4.75565 4.97621 5.14693 5.21192 5.22605 5.30228 5.38849 5.44386 5.53054 5.64040 5.69896 5.71975 5.77771 6.02669 6.15830 6.19821 6.34185 6.57872 6.99725 7.12202 7.36200 7.50032 7.55778 7.70632 7.99873 8.68080 8.82285 9.18147 9.45389 10.95435 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.033326 B = 0.002874 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.977082 B = 9741.145400 C =10006.317003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.510 5.510 3 C 0.036 3.964 4 C 0.499 3.501 5 O -0.536 6.536 6 N -0.716 5.716 7 C 0.252 3.748 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.091 3.909 17 C -0.069 4.069 18 C -0.103 4.103 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.010 4.010 23 Cl -0.052 7.052 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.017 0.983 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.389 0.611 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -18.813 -16.217 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.234 5.234 3 C -0.095 4.095 4 C 0.283 3.717 5 O -0.414 6.414 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.581 4.581 9 H 0.080 0.920 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.037 4.037 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.037 4.037 23 Cl -0.023 7.023 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.035 0.965 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.708 -19.319 -14.862 24.385 hybrid contribution 0.382 1.629 -0.867 1.885 sum 1.090 -17.689 -15.729 23.696 Atomic orbital electron populations 1.22574 0.86440 1.02464 1.01261 1.61589 1.08812 1.11988 1.40973 1.22014 1.01578 0.89335 0.96551 1.20251 0.80697 0.82339 0.88384 1.90634 1.40064 1.64201 1.46470 1.46444 1.55802 1.12539 1.21758 1.19063 0.96390 0.91432 0.79986 1.21235 1.36687 0.97256 1.02918 0.91952 1.24955 0.94993 0.98956 0.95151 1.69980 1.39613 1.36720 1.05967 0.86425 0.79227 0.83871 0.77432 1.20495 1.21007 1.19760 1.21085 1.01025 0.89247 0.92312 1.19642 0.96028 0.95557 0.95780 1.21044 0.96373 0.95385 0.99335 1.21175 1.00000 0.93953 0.98786 1.21094 0.95719 1.00116 0.95932 1.21089 0.98582 0.93366 1.00445 1.20828 0.94317 0.93302 0.95261 1.98400 1.49891 1.84544 1.69451 0.91787 0.88864 0.96481 0.88412 0.92475 0.77894 0.95681 0.95580 0.92472 0.89390 0.93738 0.85476 0.85615 0.85371 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.98 60.06 0.54 0.83 16 2 N -0.51 -7.31 4.37 -245.83 -1.08 -8.39 16 3 C 0.04 0.53 5.45 -4.98 -0.03 0.50 16 4 C 0.50 10.00 7.52 -10.98 -0.08 9.91 16 5 O -0.54 -12.95 14.33 5.56 0.08 -12.87 16 6 N -0.72 -15.11 5.55 -61.47 -0.34 -15.45 16 7 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 8 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 9 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 12 Si 0.90 20.97 29.54 -169.99 -5.02 15.94 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 16 C 0.09 1.02 4.43 -4.97 -0.02 1.00 16 17 C -0.07 -0.77 4.42 -104.59 -0.46 -1.23 16 18 C -0.10 -0.94 9.12 -39.59 -0.36 -1.31 16 19 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 20 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 21 C -0.12 -1.16 9.83 -39.55 -0.39 -1.55 16 22 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 23 Cl -0.05 -0.68 27.55 -51.86 -1.43 -2.11 16 24 H 0.06 0.88 6.88 -51.93 -0.36 0.52 16 25 H 0.09 1.66 5.83 -51.93 -0.30 1.36 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 1.23 7.93 -51.93 -0.41 0.82 16 28 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 29 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.09 0.95 7.39 -51.93 -0.38 0.57 16 34 H 0.04 0.43 7.93 -51.93 -0.41 0.01 16 35 H 0.13 0.95 8.00 -52.49 -0.42 0.53 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -32.79 337.17 -9.38 -42.18 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.12 Total: 2.86 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.29 Total: -1.66 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.68 Total: -49.42 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.43 Total: -2.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.79 -9.38 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048272880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.889 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds