Wall clock time and date at job start Tue Mar 31 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48499 * 109.47104 * 269.99881 * 3 2 1 5 5 H 1.48500 * 109.47327 * 30.00054 * 3 2 1 6 6 H 1.48502 * 109.47453 * 149.99958 * 3 2 1 7 7 C 1.38813 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00266 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00249 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47000 * 34.99478 * 10 9 7 12 12 C 1.50698 * 109.47069 * 154.99901 * 10 9 7 13 13 O 1.21281 * 120.00601 * 359.97438 * 12 10 9 14 14 N 1.34784 * 119.99711 * 179.97438 * 12 10 9 15 15 C 1.39925 * 119.99625 * 174.92039 * 14 12 10 16 16 C 1.38870 * 120.07286 * 326.45274 * 15 14 12 17 17 C 1.38112 * 119.93075 * 179.76924 * 16 15 14 18 18 C 1.38286 * 120.06722 * 0.48690 * 17 16 15 19 19 C 1.38279 * 120.14244 * 359.77081 * 18 17 16 20 20 C 1.38117 * 120.07203 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.46774 * 274.99692 * 10 9 7 22 22 C 1.38237 * 119.99996 * 319.72622 * 21 10 9 23 23 C 1.38237 * 120.00154 * 179.80730 * 22 21 10 24 24 C 1.38238 * 119.99489 * 0.39894 * 23 22 21 25 25 C 1.38240 * 120.00171 * 359.85923 * 24 23 22 26 26 C 1.38229 * 120.00172 * 359.94642 * 25 24 23 27 27 H 0.97004 * 120.00147 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99759 * 359.97438 * 9 7 2 29 29 H 0.96996 * 119.99824 * 354.63616 * 14 12 10 30 30 H 1.08002 * 120.03636 * 359.97438 * 16 15 14 31 31 H 1.07993 * 119.96459 * 180.25548 * 17 16 15 32 32 H 1.08003 * 119.92649 * 179.74219 * 18 17 16 33 33 H 1.07997 * 119.96394 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.03526 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00281 * 359.97438 * 22 21 10 36 36 H 1.07991 * 120.00232 * 180.23045 * 23 22 21 37 37 H 1.08004 * 119.99779 * 179.83063 * 24 23 22 38 38 H 1.08000 * 119.99608 * 179.97438 * 25 24 23 39 39 H 1.08000 * 120.00170 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5888 12 6 1.1941 -4.7357 0.5999 13 8 0.0766 -4.4708 0.9900 14 7 1.6632 -5.9950 0.7035 15 6 0.9043 -6.9727 1.3563 16 6 0.1039 -6.6259 2.4369 17 6 -0.6475 -7.5924 3.0761 18 6 -0.5958 -8.9061 2.6475 19 6 0.2043 -9.2557 1.5752 20 6 0.9542 -8.2929 0.9284 21 6 2.4164 -4.0299 -1.4160 22 6 1.5054 -3.8274 -2.4358 23 6 1.8355 -4.1659 -3.7348 24 6 3.0736 -4.7146 -4.0127 25 6 3.9825 -4.9220 -2.9920 26 6 3.6539 -4.5798 -1.6937 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0002 29 1 2.5249 -6.2244 0.3220 30 1 0.0666 -5.6008 2.7750 31 1 -1.2733 -7.3226 3.9139 32 1 -1.1812 -9.6609 3.1516 33 1 0.2429 -10.2826 1.2431 34 1 1.5792 -8.5666 0.0912 35 1 0.5368 -3.4023 -2.2182 36 1 1.1253 -4.0043 -4.5321 37 1 3.3305 -4.9816 -5.0271 38 1 4.9496 -5.3511 -3.2091 39 1 4.3639 -4.7422 -0.8962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049067919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:41 Heat of formation + Delta-G solvation = 36.647390 kcal Electronic energy + Delta-G solvation = -22959.116327 eV Core-core repulsion = 19638.976474 eV Total energy + Delta-G solvation = -3320.139853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.41782 -38.93404 -37.98598 -34.84356 -34.42978 -32.11338 -30.83767 -30.52616 -29.67587 -29.38979 -26.28533 -23.48017 -22.80349 -22.36870 -22.03596 -21.13124 -19.66786 -17.92127 -17.51380 -16.72209 -16.12855 -15.96048 -15.27793 -15.01113 -14.61445 -14.39704 -14.15392 -13.90509 -13.69814 -13.30507 -13.06577 -12.98695 -12.85642 -12.57070 -12.25156 -11.86527 -11.63794 -11.17885 -11.05881 -10.96913 -10.78834 -10.63589 -10.19730 -10.17100 -9.83776 -9.60693 -9.06110 -8.86100 -8.52273 -8.25115 -7.98554 -7.13093 -5.83240 -3.15841 1.36042 1.47229 1.71854 1.81964 2.96592 3.24941 3.40944 3.46075 3.47314 3.92427 4.18539 4.53032 4.90839 4.99143 5.11332 5.20028 5.21839 5.25412 5.35744 5.46794 5.48886 5.57417 5.65508 5.71533 5.79320 5.90860 6.00354 6.07709 6.11487 6.36114 6.40108 6.44144 6.48257 6.58983 6.65926 6.79814 6.91698 7.13201 7.15381 7.40819 7.55833 7.64808 8.31322 8.46216 9.45322 9.93565 10.32216 11.37734 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.004999 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.142829 B = 5600.292192 C = 7199.562144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.696 5.696 10 C 0.199 3.801 11 H 0.086 0.914 12 C 0.514 3.486 13 O -0.502 6.502 14 N -0.679 5.679 15 C 0.159 3.841 16 C -0.123 4.123 17 C -0.100 4.100 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.089 4.089 22 C -0.079 4.079 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.258 0.742 28 H 0.397 0.603 29 H 0.409 0.591 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 -17.737 -0.877 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.200 4.200 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.084 3.916 11 H 0.104 0.896 12 C 0.301 3.699 13 O -0.374 6.374 14 N -0.325 5.325 15 C 0.064 3.936 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.165 4.165 19 C -0.122 4.122 20 C -0.174 4.174 21 C -0.093 4.093 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.234 0.766 29 H 0.245 0.755 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.430 -17.233 -0.565 17.803 hybrid contribution 0.630 0.910 -0.392 1.175 sum 5.060 -16.323 -0.957 17.116 Atomic orbital electron populations 1.69699 1.05152 1.25974 1.55927 1.24776 0.95491 0.97764 1.01975 0.86168 0.78684 0.83552 0.77595 1.21539 1.21630 1.20588 1.19166 0.91006 0.83388 1.44524 0.90905 1.42262 1.06489 0.97980 1.87033 1.19023 0.94903 0.86464 0.91253 0.89639 1.21603 0.87875 0.82540 0.77916 1.90700 1.19289 1.80853 1.46523 1.43775 1.22430 1.09098 1.57229 1.17851 0.94997 0.88463 0.92248 1.21262 0.97853 1.00938 0.94315 1.21047 0.98514 0.92741 0.99587 1.21069 1.00670 0.96347 0.98384 1.20881 0.96502 0.98797 0.96000 1.20896 1.03059 0.92077 1.01345 1.20950 0.94048 0.96573 0.97713 1.21053 1.00115 0.96532 0.92033 1.21128 0.96803 0.99613 0.96685 1.21020 0.94410 1.00841 0.98642 1.20974 0.99040 1.01418 0.93094 1.20992 0.96338 1.00350 0.96691 0.93234 0.76570 0.75546 0.84593 0.85913 0.86328 0.86047 0.85915 0.85755 0.86659 0.86903 0.86745 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.81 13.06 55.49 0.72 -27.09 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.80 9.92 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.70 -17.45 4.25 -55.69 -0.24 -17.69 16 10 C 0.20 3.90 2.91 -70.23 -0.20 3.69 16 11 H 0.09 1.58 7.94 -51.93 -0.41 1.17 16 12 C 0.51 9.64 6.94 -10.98 -0.08 9.56 16 13 O -0.50 -11.29 13.53 5.56 0.08 -11.22 16 14 N -0.68 -9.96 5.27 -9.86 -0.05 -10.01 16 15 C 0.16 2.33 6.28 -83.69 -0.53 1.80 16 16 C -0.12 -1.91 8.66 -39.39 -0.34 -2.25 16 17 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 18 C -0.15 -1.62 10.04 -39.55 -0.40 -2.02 16 19 C -0.10 -1.12 10.04 -39.61 -0.40 -1.51 16 20 C -0.15 -1.85 9.96 -39.39 -0.39 -2.24 16 21 C -0.09 -1.57 4.65 -104.62 -0.49 -2.05 16 22 C -0.08 -1.47 9.32 -39.58 -0.37 -1.84 16 23 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 24 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 26 C -0.12 -1.80 9.40 -39.58 -0.37 -2.17 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.40 11.07 6.99 -40.82 -0.29 10.78 16 29 H 0.41 4.78 8.36 -40.82 -0.34 4.44 16 30 H 0.14 2.40 6.43 -52.49 -0.34 2.06 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.12 2.61 7.73 -52.49 -0.41 2.20 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -32.38 338.79 -9.51 -41.89 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -5.40 Total: -14.48 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.44 Total: -54.79 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.38 -9.51 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049067919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.540 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds