Wall clock time and date at job start Tue Mar 31 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46902 * 120.00275 * 2 1 3 5 5 C 1.38234 * 120.00277 * 120.00076 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 5 9 9 S 1.81399 * 109.47418 * 89.99860 * 8 7 6 10 10 O 1.42098 * 108.57764 * 294.49010 * 9 8 7 11 11 O 1.42106 * 108.57467 * 65.51255 * 9 8 7 12 12 C 1.81400 * 101.92248 * 179.97438 * 9 8 7 13 13 C 1.52990 * 109.47053 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.47222 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99373 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99952 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00267 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99594 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47202 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46786 * 120.00384 * 18 16 14 21 21 H 1.48502 * 109.47061 * 239.99839 * 18 16 14 22 22 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 23 23 C 1.38235 * 119.99518 * 300.01759 * 4 2 1 24 24 H 1.08995 * 109.47212 * 300.00100 * 1 2 3 25 25 H 1.09007 * 109.47020 * 59.99975 * 1 2 3 26 26 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46966 * 239.99231 * 2 1 3 28 28 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47004 * 300.00035 * 3 2 1 30 30 H 1.08995 * 109.46969 * 59.99751 * 3 2 1 31 31 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 34 34 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 35 35 H 1.09002 * 109.46784 * 300.00255 * 12 9 8 36 36 H 1.08998 * 109.46834 * 59.99759 * 12 9 8 37 37 H 1.09002 * 109.47530 * 299.99794 * 13 12 9 38 38 H 1.08998 * 109.47500 * 60.00163 * 13 12 9 39 39 H 0.96998 * 119.99806 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.00299 * 179.97438 * 22 7 6 41 41 H 1.07997 * 120.00423 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2872 -2.4863 2.2324 7 6 2.9532 -2.0141 3.4879 8 6 3.4495 -2.7288 4.7184 9 16 5.0501 -2.0353 5.2162 10 8 6.0037 -2.3250 4.2035 11 8 4.8535 -0.6867 5.6189 12 6 5.4465 -3.0241 6.6844 13 6 6.7919 -2.5721 7.2557 14 6 7.1216 -3.3940 8.4751 15 1 6.4399 -4.1622 8.8088 16 6 8.2940 -3.1659 9.1638 17 7 9.1243 -2.2307 8.7570 18 14 8.7022 -4.1843 10.6757 19 1 7.6127 -5.1626 10.9225 20 1 9.9783 -4.9107 10.4534 21 1 8.8407 -3.2894 11.8527 22 6 2.1594 -0.8896 3.6147 23 6 1.6979 -0.2384 2.4860 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8899 31 1 3.0876 -2.2036 0.1228 32 1 3.9078 -3.3647 2.1334 33 1 2.7305 -2.6008 5.5276 34 1 3.5655 -3.7903 4.5000 35 1 4.6687 -2.8871 7.4356 36 1 5.5038 -4.0771 6.4086 37 1 7.5700 -2.7088 6.5046 38 1 6.7342 -1.5192 7.5315 39 1 9.9493 -2.0705 9.2414 40 1 1.8980 -0.5208 4.5956 41 1 1.0771 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:33 Heat of formation + Delta-G solvation = -74.892374 kcal Electronic energy + Delta-G solvation = -21128.158646 eV Core-core repulsion = 17906.333265 eV Total energy + Delta-G solvation = -3221.825380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.123 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81916 -36.43580 -36.05305 -35.45393 -33.87254 -31.99739 -31.17167 -31.03316 -27.40548 -27.25180 -25.54512 -23.16826 -22.45651 -21.38593 -20.10438 -18.40023 -16.97287 -16.70467 -16.07369 -15.80771 -15.54536 -15.24656 -14.88687 -14.50918 -14.20887 -13.92347 -13.78874 -13.53514 -13.40127 -12.75369 -12.64078 -12.53702 -12.38912 -12.21577 -11.73981 -11.55451 -11.47881 -11.46394 -11.40455 -11.08791 -10.98033 -10.93069 -10.83070 -10.68458 -10.36567 -10.33568 -9.69598 -9.17325 -9.01649 -8.53888 -8.49438 -6.11194 -4.17026 0.31720 1.27997 1.31204 3.25769 3.27421 3.32972 3.36191 3.61682 4.01702 4.30341 4.36082 4.41246 4.54718 4.61927 4.84080 4.90766 4.93100 5.10234 5.18095 5.23925 5.32172 5.35386 5.41089 5.42380 5.55964 5.62389 5.65711 5.69482 5.70093 5.90004 5.92448 5.96711 5.99430 6.29484 6.42435 6.49074 6.49447 6.86508 7.35468 7.40918 7.81751 8.18398 8.86886 9.47553 10.99789 Molecular weight = 296.12amu Principal moments of inertia in cm(-1) A = 0.045864 B = 0.002816 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.349152 B = 9941.561069 C =10036.661660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.075 4.075 5 C -0.117 4.117 6 C -0.101 4.101 7 C -0.086 4.086 8 C -0.582 4.582 9 S 2.397 3.603 10 O -0.940 6.940 11 O -0.940 6.940 12 C -0.574 4.574 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.102 4.102 23 C -0.114 4.114 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.130 0.870 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 1.616 -15.712 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.204 4.204 4 C -0.076 4.076 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.087 4.087 8 C -0.706 4.706 9 S 2.582 3.418 10 O -0.937 6.937 11 O -0.937 6.937 12 C -0.706 4.706 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.120 4.120 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.148 0.852 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.362 2.387 -16.098 23.797 hybrid contribution -0.176 -1.270 1.291 1.820 sum -17.537 1.117 -14.807 22.979 Atomic orbital electron populations 1.21858 0.94317 1.01981 1.01944 1.20145 0.95936 0.96202 0.95302 1.21877 1.01599 0.94927 1.01952 1.19935 0.97347 0.95526 0.94766 1.21030 0.98246 0.95706 0.98534 1.21152 0.98994 1.00234 0.91644 1.18987 1.00385 0.96677 0.92676 1.29528 1.24528 1.11561 1.04992 1.08937 0.76577 0.77812 0.78518 1.93535 1.57034 1.85870 1.57265 1.93536 1.85317 1.31817 1.83034 1.30245 1.11021 1.13251 1.16122 1.18990 0.86660 0.98092 0.97317 1.21060 1.05286 1.19073 1.10602 0.91984 1.25076 0.96160 0.95405 0.97903 1.69971 1.11151 1.31532 1.40098 0.86417 0.78396 0.80023 0.82454 1.19651 1.20792 1.20785 1.21153 0.96729 0.94718 0.99446 1.20939 1.00633 0.99997 0.91662 0.92381 0.92396 0.92560 0.90398 0.92261 0.92382 0.92296 0.85701 0.85188 0.84406 0.84403 0.86160 0.86166 0.94632 0.94622 0.92580 0.85211 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.01 37.16 0.33 -0.66 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.15 -1.15 9.01 37.16 0.33 -0.81 16 4 C -0.08 -0.80 4.78 -104.62 -0.50 -1.30 16 5 C -0.12 -1.32 9.67 -39.59 -0.38 -1.70 16 6 C -0.10 -1.29 9.70 -39.59 -0.38 -1.67 16 7 C -0.09 -1.16 5.14 -104.62 -0.54 -1.69 16 8 C -0.58 -7.12 5.93 36.01 0.21 -6.91 16 9 S 2.40 42.17 4.70 -107.50 -0.51 41.67 16 10 O -0.94 -19.51 18.10 -57.83 -1.05 -20.55 16 11 O -0.94 -19.50 18.10 -57.83 -1.05 -20.55 16 12 C -0.57 -10.72 5.74 37.15 0.21 -10.50 16 13 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 23 C -0.11 -1.28 8.71 -39.58 -0.34 -1.63 16 24 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 25 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 31 H 0.13 1.11 7.95 -52.49 -0.42 0.69 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.14 1.31 8.08 -51.92 -0.42 0.89 16 34 H 0.14 1.31 8.09 -51.92 -0.42 0.89 16 35 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 36 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 1.13 7.10 -52.49 -0.37 0.76 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -35.65 356.25 -10.36 -46.01 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.57 Total: -0.23 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: -2.27 Total: -41.96 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.09 Total: -41.10 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 42.17 SS G_CDS: -0.51 Total: 41.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.65 -10.36 -46.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.886 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds