Wall clock time and date at job start Tue Mar 31 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47443 * 2 1 4 4 C 1.36573 * 119.34436 * 270.02811 * 3 2 1 5 5 N 1.36064 * 120.53600 * 0.02562 * 4 3 2 6 6 C 1.40558 * 118.92532 * 179.97438 * 4 3 2 7 7 C 1.41129 * 121.07239 * 179.97438 * 6 4 3 8 8 O 1.21466 * 119.99318 * 6.11315 * 7 6 4 9 9 C 1.50693 * 120.00518 * 186.11480 * 7 6 4 10 10 N 1.46500 * 109.47414 * 179.97438 * 9 7 6 11 11 C 1.46498 * 119.99943 * 89.99688 * 10 9 7 12 12 C 1.36939 * 120.00105 * 270.00130 * 10 9 7 13 13 H 1.08005 * 119.99849 * 24.84172 * 12 10 9 14 14 C 1.38804 * 119.99927 * 204.84243 * 12 10 9 15 15 N 1.31621 * 120.00065 * 5.84498 * 14 12 10 16 16 Si 1.86806 * 119.99970 * 185.84600 * 14 12 10 17 17 H 1.48496 * 109.47114 * 60.00044 * 16 14 12 18 18 H 1.48503 * 109.47082 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47209 * 299.99931 * 16 14 12 20 20 C 1.46868 * 117.86379 * 359.76840 * 6 4 3 21 21 O 1.21711 * 120.68914 * 180.24527 * 20 6 4 22 22 N 1.34897 * 118.61266 * 0.44536 * 20 6 4 23 23 H 0.96995 * 119.56502 * 179.82084 * 22 20 6 24 24 C 1.34215 * 119.33718 * 89.99511 * 3 2 1 25 25 O 1.21551 * 118.79417 * 0.02940 * 24 3 2 26 26 H 1.08995 * 109.47027 * 299.99607 * 1 2 3 27 27 H 1.08990 * 109.47028 * 60.00007 * 1 2 3 28 28 H 1.09010 * 109.46876 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47300 * 239.99701 * 2 1 3 30 30 H 1.09001 * 109.47175 * 120.00454 * 2 1 3 31 31 H 0.97001 * 119.99415 * 24.94079 * 5 4 3 32 32 H 0.96995 * 119.99787 * 204.93812 * 5 4 3 33 33 H 1.08997 * 109.47359 * 299.99789 * 9 7 6 34 34 H 1.08999 * 109.47146 * 59.99995 * 9 7 6 35 35 H 1.09001 * 109.47058 * 95.03119 * 11 10 9 36 36 H 1.08997 * 109.47441 * 215.02846 * 11 10 9 37 37 H 1.09004 * 109.47272 * 335.03278 * 11 10 9 38 38 H 0.97003 * 119.99396 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2410 2.0123 -1.1905 5 7 2.0123 1.3690 -2.3674 6 6 2.7090 3.3377 -1.1802 7 6 2.9547 4.0327 -2.3836 8 8 2.6579 3.5280 -3.4478 9 6 3.5854 5.4009 -2.3484 10 7 3.7342 5.9054 -3.7157 11 6 2.6575 6.6864 -4.3296 12 6 4.8798 5.6469 -4.4200 13 1 5.4816 4.7844 -4.1745 14 6 5.2675 6.4935 -5.4495 15 7 4.5996 7.6052 -5.6742 16 14 6.7372 6.0549 -6.5160 17 1 6.4875 4.7573 -7.1934 18 1 6.9418 7.1142 -7.5365 19 1 7.9500 5.9445 -5.6663 20 6 2.9298 3.9776 0.1232 21 8 3.3301 5.1249 0.1920 22 7 2.6837 3.2657 1.2423 23 1 2.8273 3.6739 2.1104 24 6 2.2375 2.0012 1.1700 25 8 2.0240 1.3960 2.2023 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.3772 0.6367 -2.4044 32 1 2.4843 1.6427 -3.1694 33 1 2.9508 6.0789 -1.7777 34 1 4.5658 5.3370 -1.8764 35 1 2.8568 7.7494 -4.1939 36 1 2.6056 6.4596 -5.3944 37 1 1.7088 6.4315 -3.8571 38 1 4.8705 8.1965 -6.3939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:19 Heat of formation + Delta-G solvation = -32.343696 kcal Electronic energy + Delta-G solvation = -24687.320895 eV Core-core repulsion = 20953.340100 eV Total energy + Delta-G solvation = -3733.980795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47446 -39.36217 -38.93411 -37.58022 -35.21934 -34.86854 -34.21966 -31.96867 -31.08614 -30.10420 -26.94836 -25.61660 -24.76220 -24.26421 -23.17247 -21.55142 -20.30773 -19.43610 -18.11896 -17.97331 -17.16503 -16.88196 -16.48273 -16.07885 -15.71220 -15.08770 -14.75620 -14.63788 -14.32868 -14.21859 -13.93496 -13.52515 -13.33339 -13.02174 -12.90253 -12.46882 -12.27440 -11.79463 -11.63195 -11.33497 -10.96440 -10.73159 -10.56948 -10.39071 -10.25018 -10.09282 -10.01243 -9.80760 -9.66421 -9.00527 -8.33738 -8.16381 -6.51176 -5.54051 -3.00995 0.86938 1.55710 1.77260 2.83707 2.93599 3.22233 3.49203 3.52915 3.54587 3.77231 4.10644 4.41994 4.44298 4.62471 4.67192 4.86368 4.97261 5.20310 5.27830 5.53308 5.56942 5.62813 5.71984 5.90573 6.11052 6.52177 6.63848 6.68468 6.85800 6.87467 7.00713 7.27793 7.36003 7.63407 7.91301 7.97870 7.99315 8.48779 8.65903 9.42841 10.04697 10.55245 11.50952 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.004174 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.233929 B = 6706.698546 C = 7133.739168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 N -0.543 5.543 4 C 0.529 3.471 5 N -0.807 5.807 6 C -0.423 4.423 7 C 0.397 3.603 8 O -0.484 6.484 9 C 0.126 3.874 10 N -0.589 5.589 11 C 0.170 3.830 12 C -0.241 4.241 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.912 5.912 16 Si 0.905 3.095 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.571 3.429 21 O -0.493 6.493 22 N -0.661 5.661 23 H 0.430 0.570 24 C 0.717 3.283 25 O -0.544 6.544 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.402 0.598 32 H 0.439 0.561 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.043 0.957 37 H -0.009 1.009 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 -17.491 12.498 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.270 5.270 4 C 0.306 3.694 5 N -0.358 5.358 6 C -0.440 4.440 7 C 0.278 3.722 8 O -0.364 6.364 9 C -0.003 4.003 10 N -0.310 5.310 11 C 0.026 3.974 12 C -0.371 4.371 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.558 5.558 16 Si 0.736 3.264 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.211 1.211 20 C 0.366 3.634 21 O -0.366 6.366 22 N -0.330 5.330 23 H 0.273 0.727 24 C 0.418 3.582 25 O -0.417 6.417 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.234 0.766 32 H 0.284 0.716 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.009 0.991 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.921 -17.351 12.275 23.050 hybrid contribution 0.703 -0.406 -0.441 0.924 sum -8.219 -17.757 11.834 22.867 Atomic orbital electron populations 1.22218 0.93825 1.03776 1.03482 1.21966 0.96006 0.78942 1.05857 1.44922 1.62482 1.15676 1.03892 1.18509 0.83148 0.87783 0.79961 1.42840 1.45911 1.37686 1.09359 1.20904 1.33438 0.92885 0.96797 1.21975 0.74524 0.90753 0.84979 1.90248 1.45070 1.68181 1.32868 1.21010 1.00039 0.91147 0.88128 1.43687 1.16337 1.61311 1.09626 1.20764 0.85482 0.94728 0.96438 1.19087 0.99866 1.05299 1.12828 0.91969 1.25043 0.98444 0.95646 1.00570 1.70055 1.41217 1.11876 1.32698 0.86324 0.82824 0.77163 0.80119 1.21272 1.21710 1.21056 1.18024 0.76449 0.85892 0.83053 1.90940 1.43682 1.16059 1.85961 1.44506 1.62836 1.12550 1.13124 0.72749 1.15378 0.77998 0.81798 0.83034 1.91040 1.55754 1.64053 1.30855 0.91103 0.92000 0.89904 0.88668 0.87041 0.76624 0.71559 0.90475 0.90193 0.95236 0.93854 0.99078 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.17 37.16 0.38 -0.47 16 2 C 0.09 0.53 5.44 -4.04 -0.02 0.51 16 3 N -0.54 -5.08 2.59 -120.43 -0.31 -5.39 16 4 C 0.53 6.00 7.53 -153.55 -1.16 4.85 16 5 N -0.81 -7.40 7.89 31.60 0.25 -7.15 16 6 C -0.42 -6.54 5.92 -104.44 -0.62 -7.16 16 7 C 0.40 7.87 6.97 -33.22 -0.23 7.64 16 8 O -0.48 -10.25 13.90 5.40 0.08 -10.17 16 9 C 0.13 2.89 4.36 -5.20 -0.02 2.87 16 10 N -0.59 -16.14 2.41 -182.51 -0.44 -16.58 16 11 C 0.17 4.61 8.95 59.85 0.54 5.15 16 12 C -0.24 -7.05 9.66 -15.06 -0.15 -7.20 16 13 H 0.06 1.78 7.84 -52.48 -0.41 1.37 16 14 C 0.00 0.01 5.23 -17.43 -0.09 -0.09 16 15 N -0.91 -27.89 10.46 55.49 0.58 -27.31 16 16 Si 0.91 22.83 29.56 -169.99 -5.02 17.81 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.57 8.59 7.89 -12.71 -0.10 8.49 16 21 O -0.49 -8.91 14.62 5.18 0.08 -8.83 16 22 N -0.66 -7.70 5.20 -17.13 -0.09 -7.79 16 23 H 0.43 4.18 8.86 -40.82 -0.36 3.82 16 24 C 0.72 8.04 8.33 -87.85 -0.73 7.31 16 25 O -0.54 -6.78 16.51 5.32 0.09 -6.69 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.30 7.82 -51.93 -0.41 -0.11 16 28 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.10 0.32 6.82 -51.93 -0.35 -0.03 16 30 H 0.11 0.65 7.31 -51.93 -0.38 0.27 16 31 H 0.40 2.15 7.01 -40.82 -0.29 1.86 16 32 H 0.44 5.14 6.18 -40.82 -0.25 4.89 16 33 H 0.08 1.75 7.02 -51.93 -0.36 1.39 16 34 H 0.08 1.87 7.67 -51.93 -0.40 1.47 16 35 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 36 H 0.04 1.25 7.26 -51.93 -0.38 0.87 16 37 H -0.01 -0.23 8.03 -51.93 -0.42 -0.65 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -36.57 318.68 -6.57 -43.14 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.37 Total: 2.26 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: -2.20 Total: 21.90 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.01 Total: -64.22 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.24 Total: -25.70 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.57 -6.57 -43.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.797 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds