Wall clock time and date at job start Tue Mar 31 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99646 * 2 1 4 4 H 1.48496 * 109.47330 * 84.03903 * 3 2 1 5 5 H 1.48506 * 109.47106 * 204.03848 * 3 2 1 6 6 H 1.48498 * 109.47706 * 324.03632 * 3 2 1 7 7 C 1.38812 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99611 * 21.23299 * 7 2 1 9 9 N 1.36932 * 120.00215 * 201.23513 * 7 2 1 10 10 C 1.46501 * 119.99652 * 40.68794 * 9 7 2 11 11 C 1.52998 * 109.47318 * 90.00127 * 10 9 7 12 12 H 1.08998 * 109.46961 * 305.00118 * 11 10 9 13 13 O 1.42907 * 109.47086 * 64.99707 * 11 10 9 14 14 C 1.52999 * 109.47268 * 184.99518 * 11 10 9 15 15 N 1.46504 * 109.47240 * 174.99755 * 14 11 10 16 16 C 1.34948 * 126.03793 * 124.71784 * 15 14 11 17 17 C 1.35317 * 107.74789 * 179.84326 * 16 15 14 18 18 N 1.48014 * 126.03940 * 180.16333 * 17 16 15 19 19 O 1.21801 * 119.99756 * 180.33115 * 18 17 16 20 20 O 1.21804 * 120.00192 * 0.32406 * 18 17 16 21 21 C 1.39869 * 107.91635 * 0.42258 * 17 16 15 22 22 N 1.30836 * 108.20706 * 359.74026 * 21 17 16 23 23 C 1.46496 * 120.00108 * 220.68658 * 9 7 2 24 24 C 1.52996 * 117.49722 * 14.25974 * 23 9 7 25 25 C 1.53003 * 117.50042 * 305.59830 * 23 9 7 26 26 H 0.96995 * 120.00194 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46731 * 209.99817 * 10 9 7 28 28 H 1.08996 * 109.47445 * 329.99534 * 10 9 7 29 29 H 0.96702 * 113.99705 * 60.00195 * 13 11 10 30 30 H 1.08997 * 109.47171 * 294.99899 * 14 11 10 31 31 H 1.09007 * 109.46986 * 55.00169 * 14 11 10 32 32 H 1.08002 * 126.12587 * 359.97438 * 16 15 14 33 33 H 1.07995 * 125.89476 * 179.75915 * 21 17 16 34 34 H 1.09000 * 115.54800 * 159.92626 * 23 9 7 35 35 H 1.08995 * 117.50132 * 359.97438 * 24 23 9 36 36 H 1.09005 * 117.49926 * 145.02463 * 24 23 9 37 37 H 1.08997 * 117.49682 * 214.97859 * 25 23 9 38 38 H 1.09001 * 117.49657 * 359.97405 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3717 2.1192 1.3924 5 1 3.6050 1.4072 -0.5703 6 1 1.5162 2.6131 -0.8222 7 6 2.0103 -1.2021 -0.0005 8 1 1.5253 -2.1056 -0.3397 9 7 3.3099 -1.2425 0.4290 10 6 3.7173 -0.4686 1.6043 11 6 3.5438 -1.3221 2.8622 12 1 2.5177 -1.6860 2.9156 13 8 4.4410 -2.4332 2.8115 14 6 3.8499 -0.4755 4.0992 15 7 3.5690 -1.2559 5.3069 16 6 4.4345 -1.5014 6.3127 17 6 3.7910 -2.2519 7.2367 18 7 4.3640 -2.7482 8.5080 19 8 3.6841 -3.4236 9.2597 20 8 5.5154 -2.4813 8.8023 21 6 2.4906 -2.4807 6.7753 22 7 2.3563 -1.8842 5.6185 23 6 4.2929 -2.0596 -0.2868 24 6 3.9080 -2.5721 -1.6761 25 6 3.9659 -3.5402 -0.4917 26 1 -0.4850 0.8400 0.0004 27 1 4.7631 -0.1785 1.5035 28 1 3.0984 0.4250 1.6833 29 1 5.3740 -2.1834 2.7626 30 1 4.9006 -0.1856 4.0902 31 1 3.2262 0.4185 4.0911 32 1 5.4569 -1.1583 6.3709 33 1 1.7288 -3.0511 7.2858 34 1 5.3365 -1.7931 -0.1200 35 1 2.9233 -2.3018 -2.0573 36 1 4.6986 -2.6433 -2.4231 37 1 4.7945 -4.2476 -0.4600 38 1 3.0196 -3.9064 -0.0935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075681058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:22 Heat of formation + Delta-G solvation = 60.333682 kcal Electronic energy + Delta-G solvation = -23995.438352 eV Core-core repulsion = 20265.476350 eV Total energy + Delta-G solvation = -3729.962002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.40874 -42.35816 -39.57646 -37.96333 -37.52576 -35.21094 -34.62846 -33.33226 -32.33007 -30.74651 -27.92727 -26.62214 -25.65496 -23.50650 -22.96532 -22.63484 -22.22377 -21.55899 -20.12687 -19.51462 -18.86257 -18.56378 -17.68802 -17.35516 -17.14583 -16.90943 -16.78115 -15.91685 -15.55946 -15.31319 -15.04980 -14.49083 -14.45764 -14.04987 -13.68074 -13.35948 -13.00208 -12.75908 -12.68117 -12.56173 -12.26675 -12.21377 -12.20674 -12.04485 -11.93410 -11.83242 -11.59822 -11.24103 -10.98841 -10.90924 -10.61694 -10.42485 -8.54989 -8.22065 -5.66158 -0.76653 0.24839 0.45194 1.22554 1.25859 1.26110 1.44175 1.54766 2.38805 2.84834 3.04044 3.16972 3.35195 3.40963 3.45357 3.64309 3.79676 3.94466 4.03717 4.26165 4.27859 4.32183 4.37817 4.43700 4.48404 4.72303 4.77313 4.95524 5.01508 5.16440 5.27482 5.33950 5.45168 5.54642 5.90946 6.01184 6.18419 6.63783 6.93876 6.99655 7.59984 7.98182 8.97477 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.003998 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.541857 B = 7002.313774 C = 7596.770376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.020 4.020 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.245 1.245 6 H -0.315 1.315 7 C -0.257 4.257 8 H 0.021 0.979 9 N -0.575 5.575 10 C 0.109 3.891 11 C 0.092 3.908 12 H 0.062 0.938 13 O -0.557 6.557 14 C 0.090 3.910 15 N -0.329 5.329 16 C 0.179 3.821 17 C -0.218 4.218 18 N 0.078 4.922 19 O -0.206 6.206 20 O -0.176 6.176 21 C 0.108 3.892 22 N -0.300 5.300 23 C 0.128 3.872 24 C -0.203 4.203 25 C -0.204 4.204 26 H 0.263 0.737 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.384 0.616 30 H 0.169 0.831 31 H 0.108 0.892 32 H 0.249 0.751 33 H 0.219 0.781 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.760 1.903 9.803 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.217 4.217 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.169 1.169 6 H -0.244 1.244 7 C -0.387 4.387 8 H 0.039 0.961 9 N -0.293 5.293 10 C -0.017 4.017 11 C 0.029 3.971 12 H 0.080 0.920 13 O -0.363 6.363 14 C -0.030 4.030 15 N -0.105 5.105 16 C 0.023 3.977 17 C -0.317 4.317 18 N 0.588 4.412 19 O -0.411 6.411 20 O -0.390 6.390 21 C -0.082 4.082 22 N -0.119 5.119 23 C 0.020 3.980 24 C -0.241 4.241 25 C -0.244 4.244 26 H 0.072 0.928 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.233 0.767 30 H 0.187 0.813 31 H 0.126 0.874 32 H 0.265 0.735 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.978 2.241 8.116 16.318 hybrid contribution 0.021 0.323 0.670 0.744 sum 13.999 2.564 8.786 16.726 Atomic orbital electron populations 1.70029 1.08308 1.27701 1.53373 1.26240 0.95598 1.01824 0.98004 0.85775 0.79768 0.78827 0.78179 1.18404 1.16880 1.24439 1.18321 0.87561 0.92382 1.40477 0.96077 1.43537 1.05409 1.53307 1.27062 1.21975 1.00796 0.93276 0.85677 1.22613 0.94008 0.88003 0.92443 0.92022 1.86729 1.20191 1.32820 1.96609 1.23281 1.07092 0.93399 0.79187 1.49003 1.07662 1.37366 1.16507 1.23002 0.98549 0.91355 0.84775 1.21152 0.97980 1.20067 0.92504 1.42599 0.99944 0.97658 1.00965 1.94548 1.60610 1.37868 1.48121 1.94494 1.02374 1.62217 1.79873 1.24284 0.95476 0.96779 0.91632 1.77905 1.04691 1.14067 1.15285 1.21381 0.92968 0.90055 0.93548 1.23162 1.02227 1.05978 0.92753 1.23137 1.01467 0.95962 1.03883 0.92785 0.88000 0.93408 0.76710 0.81329 0.87377 0.73477 0.76422 0.84601 0.92129 0.87053 0.87559 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.63 13.97 21.65 0.30 -57.32 16 2 C -0.02 -1.10 5.30 84.86 0.45 -0.65 16 3 Si 0.95 40.70 25.10 68.60 1.72 42.43 16 4 H -0.26 -9.75 6.73 99.48 0.67 -9.09 16 5 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.32 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.26 -13.75 8.39 84.03 0.70 -13.04 16 8 H 0.02 1.35 7.50 -2.91 -0.02 1.33 16 9 N -0.58 -23.41 2.34 -678.05 -1.59 -25.00 16 10 C 0.11 3.35 4.20 86.38 0.36 3.71 16 11 C 0.09 2.58 3.33 30.59 0.10 2.68 16 12 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 13 O -0.56 -14.32 12.84 -148.98 -1.91 -16.24 16 14 C 0.09 1.57 6.15 86.38 0.53 2.10 16 15 N -0.33 -6.94 3.63 -348.05 -1.26 -8.20 16 16 C 0.18 2.94 11.13 83.54 0.93 3.87 16 17 C -0.22 -4.94 7.11 36.10 0.26 -4.68 16 18 N 0.08 2.02 4.45 -47.13 -0.21 1.81 16 19 O -0.21 -5.96 19.05 18.89 0.36 -5.60 16 20 O -0.18 -4.48 19.02 18.88 0.36 -4.12 16 21 C 0.11 2.65 11.75 85.24 1.00 3.65 16 22 N -0.30 -8.59 12.34 -57.03 -0.70 -9.30 16 23 C 0.13 4.35 6.21 44.99 0.28 4.63 16 24 C -0.20 -7.25 9.83 30.62 0.30 -6.95 16 25 C -0.20 -7.21 10.10 30.62 0.31 -6.90 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 28 H 0.05 1.66 3.62 -2.39 -0.01 1.65 16 29 H 0.38 5.39 9.05 -74.06 -0.67 4.72 16 30 H 0.17 0.88 8.07 -2.39 -0.02 0.86 16 31 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.25 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.22 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.14 3.39 8.10 -2.39 -0.02 3.37 16 35 H 0.06 2.68 7.02 -2.39 -0.02 2.66 16 36 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.04 1.95 7.97 -2.39 -0.02 1.93 16 Total: -1.00 -78.19 333.45 2.69 -75.50 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.39 Total: 17.62 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.23 Total: -11.57 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -3.46 Total: -98.02 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.19 Total: -25.95 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.72 Total: 42.43 kcal Total: -78.19 2.69 -75.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075681058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.837 kcal (2) G-P(sol) polarization free energy of solvation -78.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds