Wall clock time and date at job start Tue Mar 31 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37961 * 119.58052 * 2 1 4 4 C 1.39403 * 119.07253 * 180.02562 * 3 2 1 5 5 N 1.39459 * 120.86312 * 179.97438 * 4 3 2 6 6 C 1.46505 * 120.00002 * 7.76601 * 5 4 3 7 7 C 1.34775 * 119.99994 * 187.76335 * 5 4 3 8 8 O 1.21547 * 120.00088 * 5.86794 * 7 5 4 9 9 C 1.47851 * 119.99936 * 185.59428 * 7 5 4 10 10 C 1.39933 * 120.02631 * 329.86098 * 9 7 5 11 11 C 1.38325 * 120.35742 * 179.76455 * 10 9 7 12 12 C 1.37753 * 120.41046 * 0.51373 * 11 10 9 13 13 C 1.40753 * 120.04369 * 359.74364 * 12 11 10 14 14 C 1.41446 * 120.17441 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99497 * 149.93320 * 14 13 12 16 16 C 1.39935 * 120.00170 * 329.93093 * 14 13 12 17 17 N 1.30823 * 119.99722 * 169.17303 * 16 14 13 18 18 Si 1.86800 * 120.00101 * 349.17382 * 16 14 13 19 19 H 1.48505 * 109.47159 * 93.08066 * 18 16 14 20 20 H 1.48496 * 109.47026 * 213.08399 * 18 16 14 21 21 H 1.48504 * 109.46850 * 333.08468 * 18 16 14 22 22 C 1.39007 * 120.02770 * 150.13811 * 9 7 5 23 23 C 1.39434 * 118.27197 * 0.24714 * 4 3 2 24 24 C 1.37920 * 119.07703 * 359.48432 * 23 4 3 25 25 N 1.31956 * 119.58068 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47105 * 89.99805 * 1 2 3 27 27 H 1.08994 * 109.47145 * 210.00351 * 1 2 3 28 28 H 1.09001 * 109.47091 * 330.00124 * 1 2 3 29 29 H 1.08001 * 120.46619 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47058 * 269.19957 * 6 5 4 31 31 H 1.08997 * 109.46945 * 29.19670 * 6 5 4 32 32 H 1.08999 * 109.46959 * 149.19791 * 6 5 4 33 33 H 1.08005 * 119.82241 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.79699 * 180.23922 * 11 10 9 35 35 H 1.08001 * 119.98035 * 179.76600 * 12 11 10 36 36 H 0.97003 * 119.99801 * 180.02562 * 17 16 14 37 37 H 1.08006 * 120.20078 * 359.95535 * 22 9 7 38 38 H 1.08007 * 120.46022 * 179.72806 * 23 4 3 39 39 H 1.07993 * 119.58214 * 180.29248 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.1998 0.0000 4 6 3.5820 1.1874 -0.0005 5 7 4.3080 2.3782 -0.0011 6 6 3.6161 3.6581 0.1703 7 6 5.6462 2.3514 -0.1593 8 8 6.2080 1.3026 -0.4077 9 6 6.4301 3.5990 -0.0366 10 6 5.8525 4.8258 -0.3822 11 6 6.5781 5.9977 -0.2655 12 6 7.8806 5.9697 0.1821 13 6 8.4803 4.7446 0.5293 14 6 9.8173 4.7128 0.9896 15 1 10.1312 3.9474 1.6840 16 6 10.7334 5.6728 0.5454 17 7 11.9025 5.7779 1.1230 18 14 10.2868 6.8044 -0.8722 19 1 9.7056 8.0620 -0.3376 20 1 11.5069 7.1179 -1.6585 21 1 9.2928 6.1326 -1.7475 22 6 7.7435 3.5535 0.4166 23 6 4.2316 -0.0464 -0.0064 24 6 3.4772 -1.2010 -0.0005 25 7 2.1584 -1.1476 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6488 2.1356 -0.0004 30 1 3.3381 4.0544 -0.8062 31 1 2.7186 3.5084 0.7705 32 1 4.2767 4.3636 0.6742 33 1 4.8333 4.8583 -0.7380 34 1 6.1220 6.9400 -0.5310 35 1 8.4419 6.8885 0.2669 36 1 12.5373 6.4437 0.8153 37 1 8.1946 2.6085 0.6809 38 1 5.3104 -0.0972 -0.0114 39 1 3.9719 -2.1610 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096006614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:14 Heat of formation + Delta-G solvation = 35.050277 kcal Electronic energy + Delta-G solvation = -22708.547652 eV Core-core repulsion = 19388.338542 eV Total energy + Delta-G solvation = -3320.209109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.127 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.32280 -40.63269 -39.22456 -37.33626 -35.64229 -33.84525 -33.23748 -32.06468 -31.43513 -28.89590 -28.24531 -27.09238 -25.54592 -23.79135 -23.18102 -22.45297 -21.07336 -19.45113 -18.34214 -18.15292 -17.88204 -17.11978 -16.99015 -16.59881 -16.22283 -15.85482 -15.58450 -15.24074 -14.93999 -14.62310 -14.51123 -14.43853 -14.08190 -13.97622 -13.80008 -13.29787 -13.03706 -12.98963 -12.77807 -12.66739 -12.53844 -12.34600 -11.82861 -11.66909 -11.47609 -11.27651 -10.90290 -10.23669 -9.92320 -9.72681 -9.59151 -9.39456 -8.91469 -6.60084 -0.12962 0.16741 0.42334 0.69688 1.23262 1.40266 1.47062 1.56153 1.74384 2.08524 2.56094 2.84092 3.28638 3.39136 3.45113 3.82053 3.87342 4.09434 4.20574 4.24095 4.32396 4.44857 4.46478 4.55185 4.66245 4.76014 4.80967 4.84071 4.86198 4.87099 4.89832 5.04301 5.11902 5.26936 5.37824 5.42210 5.55349 5.64790 5.79610 5.85773 5.97786 6.14285 6.26397 6.59188 6.69964 6.82631 7.06274 8.17412 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.034668 B = 0.003421 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.477255 B = 8182.191773 C = 8758.191740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.137 3.863 3 C -0.207 4.207 4 C 0.187 3.813 5 N -0.544 5.544 6 C 0.038 3.962 7 C 0.560 3.440 8 O -0.547 6.547 9 C -0.112 4.112 10 C -0.196 4.196 11 C -0.080 4.080 12 C -0.222 4.222 13 C 0.066 3.934 14 C -0.484 4.484 15 H 0.049 0.951 16 C 0.039 3.961 17 N -0.856 5.856 18 Si 0.972 3.028 19 H -0.245 1.245 20 H -0.284 1.284 21 H -0.246 1.246 22 C -0.164 4.164 23 C -0.247 4.247 24 C 0.118 3.882 25 N -0.527 5.527 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.173 0.827 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.107 0.893 36 H 0.295 0.705 37 H 0.088 0.912 38 H 0.156 0.844 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.339 -0.364 -3.921 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.001 4.001 3 C -0.230 4.230 4 C 0.083 3.917 5 N -0.264 5.264 6 C -0.101 4.101 7 C 0.354 3.646 8 O -0.426 6.426 9 C -0.115 4.115 10 C -0.215 4.215 11 C -0.098 4.098 12 C -0.241 4.241 13 C 0.064 3.936 14 C -0.513 4.513 15 H 0.067 0.933 16 C -0.175 4.175 17 N -0.482 5.482 18 Si 0.795 3.205 19 H -0.170 1.170 20 H -0.211 1.211 21 H -0.169 1.169 22 C -0.184 4.184 23 C -0.269 4.269 24 C -0.038 4.038 25 N -0.240 5.240 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.190 0.810 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.188 0.812 34 H 0.171 0.829 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.173 0.827 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.188 -1.508 -3.966 22.590 hybrid contribution 1.816 0.643 0.005 1.927 sum -20.371 -0.865 -3.961 20.771 Atomic orbital electron populations 1.20795 0.85866 1.04615 1.04175 1.21735 0.98683 0.87268 0.92379 1.21897 0.90849 1.01667 1.08558 1.18510 0.92283 0.85851 0.95009 1.45342 1.06042 1.07725 1.67303 1.23152 0.99462 0.82812 1.04696 1.19050 0.81567 0.89034 0.74988 1.90493 1.71258 1.32882 1.48011 1.19434 0.94021 0.92750 1.05282 1.21798 1.02081 0.89990 1.07601 1.21092 0.92836 0.99087 0.96740 1.21422 0.97139 0.96186 1.09390 1.17743 0.93045 0.91893 0.90943 1.19495 0.94515 1.12289 1.25047 0.93253 1.26951 0.94004 0.97261 0.99245 1.69681 1.08008 1.32132 1.38429 0.85431 0.78006 0.78767 0.78287 1.16962 1.21141 1.16916 1.21096 0.94066 0.96837 1.06440 1.23202 1.04565 0.92559 1.06609 1.22890 0.89197 0.98507 0.93220 1.67591 1.10039 1.30318 1.16063 0.89154 0.90573 0.88202 0.80953 0.88265 0.87667 0.87389 0.81206 0.82916 0.87554 0.89476 0.89394 0.82697 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.24 0.72 -0.50 16 2 C 0.14 2.94 6.78 42.47 0.29 3.22 16 3 C -0.21 -4.29 8.84 22.48 0.20 -4.10 16 4 C 0.19 5.26 6.51 38.50 0.25 5.51 16 5 N -0.54 -15.26 3.09 -657.19 -2.03 -17.29 16 6 C 0.04 0.65 8.10 127.77 1.04 1.69 16 7 C 0.56 20.87 7.37 86.79 0.64 21.51 16 8 O -0.55 -23.86 13.27 -3.86 -0.05 -23.91 16 9 C -0.11 -4.36 5.52 -20.14 -0.11 -4.47 16 10 C -0.20 -6.05 7.50 22.70 0.17 -5.88 16 11 C -0.08 -2.61 10.01 22.18 0.22 -2.39 16 12 C -0.22 -9.38 6.89 22.77 0.16 -9.22 16 13 C 0.07 3.29 5.18 -21.32 -0.11 3.18 16 14 C -0.48 -27.23 9.62 23.47 0.23 -27.01 16 15 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 16 C 0.04 2.06 5.48 85.25 0.47 2.53 16 17 N -0.86 -47.07 13.93 21.82 0.30 -46.76 16 18 Si 0.97 40.86 24.35 68.60 1.67 42.53 16 19 H -0.24 -9.22 6.72 99.48 0.67 -8.55 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.25 -10.36 6.49 99.48 0.65 -9.71 16 22 C -0.16 -7.81 9.34 23.01 0.21 -7.59 16 23 C -0.25 -7.85 9.03 22.48 0.20 -7.65 16 24 C 0.12 3.25 11.17 84.59 0.95 4.19 16 25 N -0.53 -13.95 10.27 -184.16 -1.89 -15.84 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 29 H 0.17 2.16 6.50 -2.91 -0.02 2.14 16 30 H 0.10 1.19 7.22 -2.39 -0.02 1.17 16 31 H 0.10 1.18 6.57 -2.39 -0.02 1.16 16 32 H 0.11 2.04 4.97 -2.39 -0.01 2.03 16 33 H 0.17 3.57 4.42 -2.91 -0.01 3.56 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.11 4.41 4.15 -2.91 -0.01 4.40 16 36 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 37 H 0.09 4.49 7.92 -2.91 -0.02 4.47 16 38 H 0.16 5.79 4.86 -31.76 -0.15 5.64 16 39 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -70.30 316.17 4.38 -65.92 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.86 Total: 22.32 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 5.52 Total: -26.97 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -3.62 Total: -79.89 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.67 Total: 42.53 kcal Total: -70.30 4.38 -65.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096006614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.971 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds