Wall clock time and date at job start Tue Mar 31 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99834 * 2 1 4 4 C 1.50695 * 109.47249 * 270.00042 * 3 2 1 5 5 H 1.08002 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00142 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99646 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99944 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47032 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.46824 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47254 * 299.99874 * 8 6 4 12 12 C 1.34779 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99926 * 185.80390 * 12 2 1 14 14 C 1.50697 * 120.00303 * 5.80802 * 12 2 1 15 15 C 1.53001 * 109.47282 * 66.88434 * 14 12 2 16 16 C 1.53004 * 109.46979 * 306.88677 * 14 12 2 17 17 N 1.46501 * 109.47135 * 186.88700 * 14 12 2 18 18 C 1.34955 * 126.03584 * 164.99592 * 17 14 12 19 19 C 1.35316 * 107.74170 * 179.73694 * 18 17 14 20 20 N 1.48027 * 126.03333 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00282 * 0.02562 * 20 19 18 22 22 O 1.21805 * 119.99640 * 180.02562 * 20 19 18 23 23 C 1.39863 * 107.92364 * 359.97438 * 19 18 17 24 24 N 1.30834 * 108.20357 * 0.02562 * 23 19 18 25 25 H 1.08995 * 109.46976 * 265.52711 * 1 2 3 26 26 H 1.08994 * 109.47148 * 25.52944 * 1 2 3 27 27 H 1.09003 * 109.46755 * 145.52764 * 1 2 3 28 28 H 1.09001 * 109.47352 * 30.00356 * 3 2 1 29 29 H 1.09007 * 109.47123 * 150.00113 * 3 2 1 30 30 H 0.97001 * 119.99422 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46759 * 175.04610 * 15 14 12 32 32 H 1.08996 * 109.46960 * 295.04405 * 15 14 12 33 33 H 1.09004 * 109.46963 * 55.04652 * 15 14 12 34 34 H 1.09002 * 109.46871 * 299.99889 * 16 14 12 35 35 H 1.08998 * 109.47508 * 59.99930 * 16 14 12 36 36 H 1.09003 * 109.47185 * 180.02562 * 16 14 12 37 37 H 1.08001 * 126.12600 * 359.73673 * 18 17 14 38 38 H 1.08004 * 125.90050 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6730 8 14 3.4388 3.4164 -3.4339 9 1 2.1414 3.5942 -4.1343 10 1 4.1811 4.7025 -3.4338 11 1 4.2412 2.3811 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3471 -1.1700 0.1057 14 6 1.3912 -2.4689 -0.1332 15 6 0.7653 -2.5579 -1.5264 16 6 0.2891 -2.5343 0.9262 17 7 2.3189 -3.5866 0.0577 18 6 1.9771 -4.8710 0.2915 19 6 3.1193 -5.5881 0.4023 20 7 3.2128 -7.0426 0.6605 21 8 2.1987 -7.7040 0.7933 22 8 4.3039 -7.5781 0.7402 23 6 4.1959 -4.7120 0.2298 24 7 3.7173 -3.5120 0.0234 25 1 -0.3633 -0.0801 1.0245 26 1 -0.3633 0.9273 -0.4429 27 1 -0.3633 -0.8472 -0.5817 28 1 1.6084 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 4.0309 4.4435 -0.8503 31 1 0.2995 -3.5351 -1.6537 32 1 0.0109 -1.7788 -1.6362 33 1 1.5395 -2.4232 -2.2818 34 1 0.7351 -2.4709 1.9187 35 1 -0.4011 -1.7027 0.7842 36 1 -0.2514 -3.4760 0.8305 37 1 0.9721 -5.2574 0.3752 38 1 5.2417 -4.9799 0.2615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102338708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:02 Heat of formation + Delta-G solvation = 80.829870 kcal Electronic energy + Delta-G solvation = -24413.304945 eV Core-core repulsion = 20684.231725 eV Total energy + Delta-G solvation = -3729.073220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48402 -41.49461 -39.67150 -36.45329 -35.86261 -35.15769 -32.75144 -31.28247 -30.90508 -28.24564 -27.61082 -26.71914 -26.09916 -23.86539 -23.13212 -21.72461 -20.89152 -19.72569 -18.47815 -18.22733 -17.50923 -16.79457 -16.59509 -16.13392 -15.60810 -15.51443 -14.95716 -14.66395 -14.28528 -13.79320 -13.71094 -13.48570 -13.28375 -12.73932 -12.25418 -12.21670 -11.97626 -11.81082 -11.74968 -11.51068 -11.48918 -11.14775 -11.10521 -11.03396 -10.80494 -10.64913 -10.26891 -10.06159 -9.81176 -9.57573 -9.04093 -8.56231 -7.89915 -6.17674 -4.23854 0.25403 1.18287 1.45887 2.10457 2.31596 2.98024 3.22375 3.28262 3.29662 3.36154 4.02331 4.10188 4.30187 4.31358 4.45358 4.49283 4.76079 4.92504 4.93844 5.05744 5.14578 5.16948 5.28761 5.41299 5.53551 5.58744 5.77687 5.80571 5.99078 6.19325 6.43878 6.81189 7.09997 7.23613 7.30575 7.74643 7.76857 8.05340 8.08218 8.65137 8.82272 9.41888 10.90370 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.003821 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.745868 B = 7326.585893 C = 7835.221895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.594 5.594 3 C 0.248 3.752 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.488 6.488 14 C 0.158 3.842 15 C -0.166 4.166 16 C -0.190 4.190 17 N -0.325 5.325 18 C 0.145 3.855 19 C -0.194 4.194 20 N 0.075 4.925 21 O -0.185 6.185 22 O -0.170 6.170 23 C 0.085 3.915 24 N -0.197 5.197 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.200 0.800 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 -13.542 1.893 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.327 5.327 3 C 0.130 3.870 4 C -0.572 4.572 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.286 3.714 13 O -0.360 6.360 14 C 0.072 3.928 15 C -0.223 4.223 16 C -0.248 4.248 17 N -0.104 5.104 18 C -0.009 4.009 19 C -0.293 4.293 20 N 0.589 4.411 21 O -0.395 6.395 22 O -0.383 6.383 23 C -0.105 4.105 24 N -0.015 5.015 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.216 0.784 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.158 -11.257 1.640 14.604 hybrid contribution -0.027 -0.892 -0.755 1.169 sum -9.185 -12.149 0.885 15.256 Atomic orbital electron populations 1.22296 0.81916 1.03626 1.00545 1.48026 1.05967 1.07169 1.71577 1.19365 0.92670 0.77237 0.97747 1.21344 1.37283 1.06583 0.92021 0.92492 1.24928 0.95126 0.96306 0.97535 1.69914 1.37875 1.14334 1.30893 0.86549 0.78422 0.77971 0.84441 1.20184 1.21042 1.20147 1.19513 0.88092 0.83913 0.79839 1.90844 1.12730 1.85552 1.46894 1.21134 0.87803 0.84804 0.99020 1.22458 1.02470 1.04094 0.93307 1.22960 0.97797 1.05921 0.98105 1.48910 1.06084 1.05485 1.49953 1.22136 0.99998 0.84530 0.94276 1.21061 0.96026 0.82771 1.29415 1.42483 1.00269 1.01656 0.96712 1.94513 1.26474 1.63310 1.55196 1.94539 1.15524 1.72998 1.55256 1.24286 1.00546 0.88384 0.97317 1.78674 0.86196 1.17568 1.19041 0.92849 0.90001 0.91242 0.94612 0.93584 0.92473 0.90802 0.87961 0.90390 0.90741 0.86274 0.90668 0.78355 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 8.51 59.85 0.51 1.25 16 2 N -0.59 -11.05 2.86 -182.96 -0.52 -11.57 16 3 C 0.25 6.03 5.18 -5.20 -0.03 6.00 16 4 C -0.53 -14.21 9.39 -34.44 -0.32 -14.54 16 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 C 0.50 9.47 6.54 -10.99 -0.07 9.39 16 13 O -0.49 -11.60 13.87 5.55 0.08 -11.52 16 14 C 0.16 2.04 0.96 -132.97 -0.13 1.92 16 15 C -0.17 -1.74 8.53 37.16 0.32 -1.42 16 16 C -0.19 -1.67 7.79 37.16 0.29 -1.38 16 17 N -0.33 -4.51 3.43 -49.73 -0.17 -4.68 16 18 C 0.15 1.63 10.28 -17.22 -0.18 1.45 16 19 C -0.19 -2.56 7.11 -80.38 -0.57 -3.13 16 20 N 0.07 1.06 4.45 33.75 0.15 1.21 16 21 O -0.19 -2.62 19.02 -29.46 -0.56 -3.18 16 22 O -0.17 -2.53 19.05 -29.46 -0.56 -3.09 16 23 C 0.09 1.19 11.75 -17.37 -0.20 0.99 16 24 N -0.20 -3.35 9.88 30.62 0.30 -3.05 16 25 H 0.05 0.54 7.04 -51.93 -0.37 0.17 16 26 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 27 H 0.07 0.64 3.18 -51.93 -0.16 0.48 16 28 H 0.04 0.87 8.07 -51.93 -0.42 0.46 16 29 H 0.05 1.29 7.35 -51.92 -0.38 0.91 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.10 0.92 5.25 -51.93 -0.27 0.64 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.12 0.88 3.53 -51.93 -0.18 0.69 16 36 H 0.07 0.42 7.37 -51.93 -0.38 0.04 16 37 H 0.20 1.41 7.55 -52.49 -0.40 1.01 16 38 H 0.21 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -34.43 324.16 -5.39 -39.81 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.22 Total: -2.16 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.48 Total: 2.19 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.50 Total: -42.91 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.04 Total: -17.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.43 -5.39 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102338708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.643 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds