Wall clock time and date at job start Tue Mar 31 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99834 * 2 1 4 4 C 1.50695 * 109.47249 * 270.00042 * 3 2 1 5 5 H 1.08002 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00142 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99646 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99944 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47032 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.46824 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47254 * 299.99874 * 8 6 4 12 12 C 1.34779 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99926 * 185.80390 * 12 2 1 14 14 C 1.50697 * 120.00303 * 5.80802 * 12 2 1 15 15 C 1.53001 * 109.47282 * 66.88434 * 14 12 2 16 16 C 1.53004 * 109.46979 * 306.88677 * 14 12 2 17 17 N 1.46501 * 109.47135 * 186.88700 * 14 12 2 18 18 C 1.34955 * 126.03584 * 164.99592 * 17 14 12 19 19 C 1.35316 * 107.74170 * 179.73694 * 18 17 14 20 20 N 1.48027 * 126.03333 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00282 * 0.02562 * 20 19 18 22 22 O 1.21805 * 119.99640 * 180.02562 * 20 19 18 23 23 C 1.39863 * 107.92364 * 359.97438 * 19 18 17 24 24 N 1.30834 * 108.20357 * 0.02562 * 23 19 18 25 25 H 1.08995 * 109.46976 * 265.52711 * 1 2 3 26 26 H 1.08994 * 109.47148 * 25.52944 * 1 2 3 27 27 H 1.09003 * 109.46755 * 145.52764 * 1 2 3 28 28 H 1.09001 * 109.47352 * 30.00356 * 3 2 1 29 29 H 1.09007 * 109.47123 * 150.00113 * 3 2 1 30 30 H 0.97001 * 119.99422 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46759 * 175.04610 * 15 14 12 32 32 H 1.08996 * 109.46960 * 295.04405 * 15 14 12 33 33 H 1.09004 * 109.46963 * 55.04652 * 15 14 12 34 34 H 1.09002 * 109.46871 * 299.99889 * 16 14 12 35 35 H 1.08998 * 109.47508 * 59.99930 * 16 14 12 36 36 H 1.09003 * 109.47185 * 180.02562 * 16 14 12 37 37 H 1.08001 * 126.12600 * 359.73673 * 18 17 14 38 38 H 1.08004 * 125.90050 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6730 8 14 3.4388 3.4164 -3.4339 9 1 2.1414 3.5942 -4.1343 10 1 4.1811 4.7025 -3.4338 11 1 4.2412 2.3811 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3471 -1.1700 0.1057 14 6 1.3912 -2.4689 -0.1332 15 6 0.7653 -2.5579 -1.5264 16 6 0.2891 -2.5343 0.9262 17 7 2.3189 -3.5866 0.0577 18 6 1.9771 -4.8710 0.2915 19 6 3.1193 -5.5881 0.4023 20 7 3.2128 -7.0426 0.6605 21 8 2.1987 -7.7040 0.7933 22 8 4.3039 -7.5781 0.7402 23 6 4.1959 -4.7120 0.2298 24 7 3.7173 -3.5120 0.0234 25 1 -0.3633 -0.0801 1.0245 26 1 -0.3633 0.9273 -0.4429 27 1 -0.3633 -0.8472 -0.5817 28 1 1.6084 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 4.0309 4.4435 -0.8503 31 1 0.2995 -3.5351 -1.6537 32 1 0.0109 -1.7788 -1.6362 33 1 1.5395 -2.4232 -2.2818 34 1 0.7351 -2.4709 1.9187 35 1 -0.4011 -1.7027 0.7842 36 1 -0.2514 -3.4760 0.8305 37 1 0.9721 -5.2574 0.3752 38 1 5.2417 -4.9799 0.2615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102338708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:02 Heat of formation + Delta-G solvation = 56.979587 kcal Electronic energy + Delta-G solvation = -24414.339171 eV Core-core repulsion = 20684.231725 eV Total energy + Delta-G solvation = -3730.107446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.52705 -42.57065 -40.98833 -37.54143 -37.10432 -36.64478 -34.69308 -32.32614 -32.03374 -29.69485 -28.65328 -27.90491 -27.19380 -25.52089 -24.31598 -22.92966 -21.97854 -20.89248 -19.61416 -19.40067 -18.71558 -18.57521 -17.83270 -17.33774 -16.91484 -16.70053 -16.39290 -16.13321 -15.45943 -14.93357 -14.72796 -14.54873 -14.31947 -14.21453 -13.55547 -13.41305 -13.32999 -13.05833 -12.86082 -12.79723 -12.65055 -12.64429 -12.57295 -12.26633 -12.21411 -12.08924 -11.76241 -11.71313 -11.11514 -10.67574 -10.60312 -10.45698 -9.47845 -8.26152 -6.41072 -0.77787 0.17105 0.46066 1.10742 1.27596 1.34410 1.38437 1.45209 1.62262 2.03667 2.35525 3.03298 3.05423 3.21530 3.35487 3.41540 3.58427 3.85544 3.97237 4.07782 4.38218 4.47629 4.53558 4.58190 4.64455 4.73990 4.80631 4.93541 5.04072 5.11165 5.19084 5.26747 5.41944 5.49954 5.77263 6.00537 6.08055 6.59717 6.64752 6.69265 7.21514 7.35857 8.80723 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.003821 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.745868 B = 7326.585893 C = 7835.221895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.600 5.600 3 C 0.263 3.737 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.964 3.036 9 H -0.256 1.256 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.490 3.510 13 O -0.554 6.554 14 C 0.167 3.833 15 C -0.163 4.163 16 C -0.187 4.187 17 N -0.333 5.333 18 C 0.176 3.824 19 C -0.210 4.210 20 N 0.078 4.922 21 O -0.166 6.166 22 O -0.208 6.208 23 C 0.087 3.913 24 N -0.261 5.261 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.029 0.971 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.253 0.747 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 -15.184 0.990 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.332 5.332 3 C 0.142 3.858 4 C -0.582 4.582 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.789 3.211 9 H -0.180 1.180 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.275 3.725 13 O -0.430 6.430 14 C 0.081 3.919 15 C -0.221 4.221 16 C -0.244 4.244 17 N -0.112 5.112 18 C 0.022 3.978 19 C -0.309 4.309 20 N 0.590 4.410 21 O -0.382 6.382 22 O -0.412 6.412 23 C -0.103 4.103 24 N -0.079 5.079 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.129 0.871 28 H 0.047 0.953 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.269 0.731 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.888 -12.920 0.735 18.264 hybrid contribution 1.067 -0.393 -0.422 1.213 sum -11.821 -13.313 0.313 17.807 Atomic orbital electron populations 1.22727 0.77841 1.05165 1.03400 1.47953 1.08434 1.05477 1.71313 1.18756 0.91098 0.79936 0.96037 1.21672 1.36977 1.06520 0.93003 0.92452 1.25835 0.94915 0.96550 1.01731 1.70042 1.38796 1.14822 1.33099 0.85516 0.78981 0.77235 0.79382 1.17987 1.20629 1.20698 1.20642 0.87885 0.85898 0.78097 1.90813 1.15866 1.86878 1.49462 1.21233 0.87446 0.80998 1.02178 1.22546 1.01748 1.07363 0.90398 1.23086 0.96384 1.09371 0.95596 1.49004 1.05176 1.06706 1.50266 1.22852 1.01386 0.82747 0.90853 1.21137 0.96602 0.82175 1.30943 1.42549 1.00092 1.01962 0.96424 1.94480 1.26252 1.63559 1.53904 1.94558 1.15846 1.73437 1.57388 1.24540 1.01631 0.88085 0.96073 1.78661 0.88610 1.19143 1.21493 0.89648 0.90760 0.87126 0.95297 0.98835 0.92422 0.86318 0.86143 0.93758 0.92081 0.84573 0.85766 0.73145 0.76725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.09 8.51 127.77 1.09 2.18 16 2 N -0.60 -22.37 2.86 -851.14 -2.43 -24.80 16 3 C 0.26 13.39 5.18 85.63 0.44 13.83 16 4 C -0.54 -29.75 9.39 25.60 0.24 -29.51 16 5 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.50 5.46 84.66 0.46 0.96 16 7 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 8 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.49 18.57 6.54 87.66 0.57 19.14 16 13 O -0.55 -27.94 13.87 -3.05 -0.04 -27.98 16 14 C 0.17 3.85 0.96 2.86 0.00 3.85 16 15 C -0.16 -2.78 8.53 71.98 0.61 -2.17 16 16 C -0.19 -2.33 7.79 71.98 0.56 -1.77 16 17 N -0.33 -8.58 3.43 -311.24 -1.07 -9.65 16 18 C 0.18 3.27 10.28 83.54 0.86 4.13 16 19 C -0.21 -5.15 7.11 36.09 0.26 -4.89 16 20 N 0.08 2.07 4.45 -47.13 -0.21 1.86 16 21 O -0.17 -4.17 19.02 18.89 0.36 -3.82 16 22 O -0.21 -6.18 19.05 18.88 0.36 -5.82 16 23 C 0.09 2.48 11.75 85.23 1.00 3.48 16 24 N -0.26 -9.10 9.88 -57.03 -0.56 -9.66 16 25 H 0.09 1.39 7.04 -2.39 -0.02 1.37 16 26 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 27 H 0.11 1.51 3.18 -2.39 -0.01 1.50 16 28 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 29 H -0.01 -0.40 7.35 -2.38 -0.02 -0.41 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.12 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.12 1.56 5.25 -2.39 -0.01 1.55 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.14 1.21 3.53 -2.39 -0.01 1.21 16 36 H 0.12 0.41 7.37 -2.39 -0.02 0.39 16 37 H 0.25 1.74 7.55 -2.91 -0.02 1.72 16 38 H 0.22 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -83.52 324.16 5.92 -77.59 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.11 Total: 2.17 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.10 Total: 9.23 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.99 Total: -96.96 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: 0.68 Total: -37.61 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -83.52 5.92 -77.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102338708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.572 kcal (2) G-P(sol) polarization free energy of solvation -83.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds