Wall clock time and date at job start Tue Mar 31 2020 03:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30505 * 125.65244 * 2 1 4 4 C 1.34126 * 109.25742 * 180.28665 * 3 2 1 5 5 N 1.48025 * 125.98868 * 179.76802 * 4 3 2 6 6 O 1.21798 * 119.99553 * 179.97438 * 5 4 3 7 7 O 1.21799 * 119.99816 * 359.97438 * 5 4 3 8 8 C 1.34670 * 108.01723 * 359.75186 * 4 3 2 9 9 N 1.35042 * 125.65268 * 179.86396 * 2 1 3 10 10 C 1.46505 * 126.39296 * 359.97438 * 9 2 1 11 11 C 1.50703 * 109.47064 * 84.71650 * 10 9 2 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99832 * 359.97438 * 13 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 16 16 H 1.08998 * 109.46997 * 359.97438 * 15 13 11 17 17 C 1.52999 * 109.46804 * 239.99641 * 15 13 11 18 18 C 1.50697 * 109.47370 * 119.99695 * 15 13 11 19 19 H 1.08007 * 120.00067 * 0.02562 * 18 15 13 20 20 C 1.37880 * 120.00053 * 180.02562 * 18 15 13 21 21 N 1.31506 * 120.00017 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99829 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47437 * 59.99930 * 22 20 18 24 24 H 1.48503 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47073 * 299.99705 * 22 20 18 26 26 H 1.08999 * 109.46839 * 270.14149 * 1 2 3 27 27 H 1.09003 * 109.46981 * 30.13649 * 1 2 3 28 28 H 1.08996 * 109.47007 * 150.14133 * 1 2 3 29 29 H 1.08001 * 126.58945 * 180.02562 * 8 4 3 30 30 H 1.09002 * 109.47068 * 204.71619 * 10 9 2 31 31 H 1.09001 * 109.47372 * 324.71707 * 10 9 2 32 32 H 1.08999 * 109.47333 * 89.99805 * 14 13 11 33 33 H 1.08997 * 109.47024 * 210.00620 * 14 13 11 34 34 H 1.09000 * 109.46875 * 330.00379 * 14 13 11 35 35 H 1.08998 * 109.47375 * 299.99807 * 17 15 13 36 36 H 1.09000 * 109.47436 * 60.00457 * 17 15 13 37 37 H 1.09004 * 109.47058 * 179.97438 * 17 15 13 38 38 H 0.96998 * 120.00111 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6819 -0.0063 5 7 4.7269 1.5854 -0.0133 6 8 5.8531 1.1215 -0.0183 7 8 4.5654 2.7926 -0.0141 8 6 3.5925 -0.6643 -0.0049 9 7 2.2941 -1.0973 0.0026 10 6 1.8425 -2.4910 0.0064 11 6 1.5627 -2.9323 -1.4071 12 8 1.7241 -2.1586 -2.3270 13 7 1.1321 -4.1863 -1.6489 14 6 0.9366 -5.1207 -0.5375 15 6 0.8606 -4.6154 -3.0230 16 1 1.0620 -3.7914 -3.7075 17 6 -0.6060 -5.0334 -3.1463 18 6 1.7468 -5.7842 -3.3687 19 1 2.4425 -6.1692 -2.6377 20 6 1.6696 -6.3621 -4.6181 21 7 0.8222 -5.8937 -5.5080 22 14 2.7677 -7.8114 -5.0463 23 1 2.4917 -8.9340 -4.1142 24 1 2.4925 -8.2463 -6.4393 25 1 4.1913 -7.4063 -4.9257 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8912 -0.5116 29 1 4.4776 -1.2832 -0.0084 30 1 2.6188 -3.1233 0.4375 31 1 0.9327 -2.5765 0.6006 32 1 -0.0852 -5.0364 -0.1674 33 1 1.1150 -6.1388 -0.8832 34 1 1.6345 -4.8818 0.2650 35 1 -0.8078 -5.8573 -2.4618 36 1 -1.2471 -4.1881 -2.8964 37 1 -0.8082 -5.3523 -4.1689 38 1 0.7682 -6.3000 -6.3872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:06 Heat of formation + Delta-G solvation = 34.159602 kcal Electronic energy + Delta-G solvation = -24012.932898 eV Core-core repulsion = 20281.835903 eV Total energy + Delta-G solvation = -3731.096995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.08362 -41.66440 -39.48027 -36.43481 -35.82963 -34.54195 -33.10125 -32.43259 -30.16334 -28.56525 -28.13409 -26.48593 -25.51011 -25.37597 -22.10097 -21.77153 -20.56842 -19.22277 -18.73737 -18.35307 -17.64907 -17.25037 -16.94362 -16.32898 -15.68142 -15.40079 -15.15720 -14.70066 -14.27207 -13.97573 -13.34465 -13.14113 -12.96907 -12.77591 -12.71135 -12.40486 -11.95071 -11.78527 -11.52655 -11.33749 -11.24446 -11.05201 -11.02915 -10.95383 -10.74784 -10.65826 -10.46589 -10.36027 -9.47246 -9.36241 -9.15126 -8.62350 -8.00705 -6.26499 -4.36449 0.27025 1.15235 1.49829 2.16042 2.51604 2.73161 3.15155 3.21968 3.22151 3.44231 3.94295 4.12009 4.22246 4.31388 4.51301 4.60722 4.62435 5.05602 5.07565 5.18072 5.29362 5.42953 5.48013 5.63015 5.65516 6.04085 6.33102 6.48210 6.51058 6.55592 6.78552 7.03686 7.15013 7.21543 7.48180 7.74780 7.86512 7.92890 8.13196 8.42335 8.67911 9.30932 10.78825 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.003754 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.494000 B = 7457.679754 C = 8134.810925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.262 3.738 3 N -0.450 5.450 4 C 0.041 3.959 5 N 0.070 4.930 6 O -0.167 6.167 7 O -0.139 6.139 8 C 0.074 3.926 9 N -0.425 5.425 10 C 0.076 3.924 11 C 0.484 3.516 12 O -0.532 6.532 13 N -0.581 5.581 14 C 0.075 3.925 15 C 0.259 3.741 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.535 4.535 19 H 0.060 0.940 20 C 0.068 3.932 21 N -0.885 5.885 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.204 0.796 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.011 0.989 37 H 0.095 0.905 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 3.020 14.538 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.003 4.003 3 N -0.171 5.171 4 C -0.168 4.168 5 N 0.591 4.409 6 O -0.376 6.376 7 O -0.359 6.359 8 C -0.069 4.069 9 N -0.105 5.105 10 C -0.049 4.049 11 C 0.268 3.732 12 O -0.410 6.410 13 N -0.312 5.312 14 C -0.069 4.069 15 C 0.160 3.840 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.522 5.522 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.202 1.202 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.221 0.779 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.114 0.886 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.864 3.592 13.832 14.575 hybrid contribution 1.237 -1.562 -0.296 2.014 sum -1.627 2.030 13.536 13.783 Atomic orbital electron populations 1.20375 0.82981 1.05650 1.04133 1.23400 0.96231 0.79161 1.01490 1.69691 0.98744 1.28900 1.19746 1.20449 0.87777 0.87351 1.21238 1.42214 1.00507 1.00849 0.97346 1.94549 1.07587 1.80662 1.54832 1.94560 1.92585 0.96312 1.52491 1.22270 0.88896 0.93904 1.01835 1.45195 1.05426 1.08121 1.51794 1.22185 1.04438 0.78894 0.99408 1.20218 0.79934 0.83667 0.89427 1.90784 1.52583 1.52709 1.44898 1.48315 1.62774 1.09542 1.10616 1.21751 0.99764 0.96622 0.88755 1.19047 0.93000 0.96408 0.75583 0.91832 1.22093 0.96442 0.97645 1.04301 1.21203 1.21613 1.15330 0.99167 0.92193 1.24889 0.95444 0.97301 0.95946 1.69846 1.35415 1.41155 1.05768 0.86519 0.80896 0.82128 0.77663 1.20118 1.21010 1.20154 0.89137 0.88058 0.89613 0.77871 0.85293 0.85348 0.93089 0.89238 0.92847 0.94943 0.96955 0.88605 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.04 36.01 0.36 -0.31 16 2 C 0.26 3.47 7.88 -155.41 -1.23 2.25 16 3 N -0.45 -7.27 11.23 -7.88 -0.09 -7.36 16 4 C 0.04 0.66 8.02 -145.54 -1.17 -0.51 16 5 N 0.07 1.19 4.45 32.62 0.15 1.33 16 6 O -0.17 -2.71 19.02 -29.46 -0.56 -3.27 16 7 O -0.14 -2.48 19.24 -29.46 -0.57 -3.05 16 8 C 0.07 0.97 11.25 -16.57 -0.19 0.78 16 9 N -0.42 -5.27 2.24 -115.18 -0.26 -5.53 16 10 C 0.08 0.77 4.71 -5.19 -0.02 0.74 16 11 C 0.48 7.93 7.74 -10.98 -0.09 7.84 16 12 O -0.53 -11.50 15.74 5.56 0.09 -11.42 16 13 N -0.58 -10.03 2.75 -175.27 -0.48 -10.51 16 14 C 0.07 0.91 9.24 59.85 0.55 1.47 16 15 C 0.26 5.88 2.64 -69.09 -0.18 5.70 16 16 H 0.06 1.73 6.90 -51.93 -0.36 1.37 16 17 C -0.15 -3.12 8.97 37.16 0.33 -2.78 16 18 C -0.53 -13.15 7.99 -34.44 -0.28 -13.42 16 19 H 0.06 1.43 7.33 -52.48 -0.38 1.04 16 20 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -23.61 11.32 55.43 0.63 -22.98 16 22 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.79 7.84 -51.93 -0.41 0.38 16 29 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.13 0.91 7.40 -51.93 -0.38 0.53 16 31 H 0.13 0.83 7.90 -51.93 -0.41 0.42 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.26 7.02 -51.93 -0.36 0.89 16 34 H 0.05 0.44 6.44 -51.93 -0.33 0.11 16 35 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -33.38 334.14 -7.68 -41.06 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.61 Total: -1.46 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.99 Total: 3.39 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.06 Total: -45.04 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.04 Total: -17.74 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.38 -7.68 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.220 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds