Wall clock time and date at job start Tue Mar 31 2020 04:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99840 * 2 1 4 4 H 1.08003 * 119.99961 * 201.54994 * 3 2 1 5 5 C 1.38813 * 119.99995 * 21.55456 * 3 2 1 6 6 N 1.31616 * 120.00157 * 11.23491 * 5 3 2 7 7 Si 1.86795 * 119.99796 * 191.22920 * 5 3 2 8 8 H 1.48501 * 109.47025 * 60.00378 * 7 5 3 9 9 H 1.48503 * 109.46964 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47795 * 300.00086 * 7 5 3 11 11 C 1.46497 * 119.99962 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47202 * 89.99943 * 11 2 1 13 13 O 1.21455 * 120.00136 * 0.02562 * 12 11 2 14 14 C 1.41123 * 120.00050 * 179.97438 * 12 11 2 15 15 C 1.40563 * 121.07192 * 182.71751 * 14 12 11 16 16 N 1.36067 * 120.53539 * 0.02760 * 15 14 12 17 17 N 1.36574 * 118.92760 * 180.29760 * 15 14 12 18 18 C 1.46497 * 119.33939 * 179.70443 * 17 15 14 19 19 C 1.34214 * 121.31777 * 359.45684 * 17 15 14 20 20 O 1.21542 * 118.79230 * 180.27071 * 19 17 15 21 21 N 1.34297 * 122.41756 * 0.54134 * 19 17 15 22 22 C 1.46501 * 119.56930 * 179.73484 * 21 19 17 23 23 C 1.34892 * 120.85899 * 359.75482 * 21 19 17 24 24 O 1.21715 * 120.69608 * 179.97438 * 23 21 19 25 25 H 1.09003 * 109.47283 * 273.27646 * 1 2 3 26 26 H 1.09010 * 109.47012 * 33.27537 * 1 2 3 27 27 H 1.08999 * 109.47296 * 153.27547 * 1 2 3 28 28 H 0.96994 * 120.00405 * 180.02562 * 6 5 3 29 29 H 1.08996 * 109.47413 * 329.99683 * 11 2 1 30 30 H 1.08999 * 109.47148 * 209.99691 * 11 2 1 31 31 H 0.96993 * 120.00181 * 154.89288 * 16 15 14 32 32 H 0.96998 * 119.99727 * 334.61135 * 16 15 14 33 33 H 1.09000 * 109.47220 * 89.99920 * 18 17 15 34 34 H 1.09008 * 109.47084 * 210.00261 * 18 17 15 35 35 H 1.09001 * 109.47532 * 329.99593 * 18 17 15 36 36 H 1.09000 * 109.47124 * 270.01853 * 22 21 19 37 37 H 1.08999 * 109.47120 * 30.01411 * 22 21 19 38 38 H 1.08996 * 109.47415 * 150.02163 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1730 1.2187 -0.3436 5 6 1.5283 2.3460 0.4417 6 7 0.3701 2.2767 1.0630 7 14 2.3362 4.0056 0.1543 8 1 2.5110 4.2251 -1.3039 9 1 1.4768 5.0784 0.7163 10 1 3.6626 4.0327 0.8215 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7031 -1.4216 13 8 2.0544 -1.0190 -2.3445 14 6 3.1428 -2.9043 -1.6800 15 6 3.4390 -3.3026 -2.9951 16 7 3.0609 -2.5336 -4.0520 17 7 4.1075 -4.4766 -3.1951 18 6 4.4151 -4.9036 -4.5623 19 6 4.4926 -5.2445 -2.1639 20 8 5.0893 -6.2780 -2.3945 21 7 4.2382 -4.9157 -0.8869 22 6 4.6825 -5.8033 0.1905 23 6 3.5786 -3.7788 -0.5835 24 8 3.3492 -3.4839 0.5749 25 1 -0.3634 0.0587 1.0260 26 1 -0.3633 0.8593 -0.5639 27 1 -0.3634 -0.9179 -0.4621 28 1 -0.0642 3.0873 1.3712 29 1 1.6085 -2.0286 0.5129 30 1 3.1499 -1.1386 0.5133 31 1 3.5467 -2.5879 -4.8897 32 1 2.3029 -1.9340 -3.9690 33 1 5.3868 -4.5071 -4.8568 34 1 4.4383 -5.9925 -4.6064 35 1 3.6490 -4.5289 -5.2411 36 1 3.8993 -6.5291 0.4096 37 1 5.5866 -6.3272 -0.1199 38 1 4.8922 -5.2144 1.0834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120782451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:01 Heat of formation + Delta-G solvation = -44.407711 kcal Electronic energy + Delta-G solvation = -24805.017203 eV Core-core repulsion = 21070.513273 eV Total energy + Delta-G solvation = -3734.503929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.47453 -40.65777 -40.16649 -38.81256 -36.94562 -36.35128 -35.03566 -33.27031 -32.52633 -29.60658 -28.27491 -27.90798 -27.74765 -25.37502 -24.14185 -23.39893 -21.28035 -20.70673 -18.96016 -18.79039 -18.68080 -18.38210 -17.34349 -17.08785 -16.80958 -16.47361 -16.18891 -16.05854 -15.85426 -15.66082 -15.04526 -14.75896 -14.65054 -14.30754 -13.85837 -13.73775 -13.50418 -13.28889 -13.21807 -12.95427 -12.73936 -12.52862 -12.27476 -12.22332 -11.96920 -11.88455 -11.28378 -11.04907 -10.78411 -10.71116 -10.38831 -9.33054 -8.71025 -7.77509 -5.24019 -0.19988 0.63669 0.72123 1.46293 1.50575 1.57133 1.58467 1.68449 2.38214 2.50317 2.54413 3.15730 3.37032 3.72046 3.77563 3.95519 4.11795 4.34781 4.37867 4.44032 4.48795 4.58289 4.70211 4.75037 4.81116 4.82455 4.91906 5.01183 5.13367 5.39096 5.61162 5.71466 5.78935 5.92850 6.31201 6.35166 6.46669 6.82919 7.03544 7.20031 7.90126 8.34900 9.27117 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.004380 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.010675 B = 6391.194824 C = 6943.170447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.607 5.607 3 C -0.252 4.252 4 H 0.061 0.939 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.973 3.027 8 H -0.280 1.280 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.127 3.873 12 C 0.405 3.595 13 O -0.510 6.510 14 C -0.461 4.461 15 C 0.564 3.436 16 N -0.782 5.782 17 N -0.534 5.534 18 C 0.054 3.946 19 C 0.711 3.289 20 O -0.545 6.545 21 N -0.561 5.561 22 C 0.078 3.922 23 C 0.572 3.428 24 O -0.530 6.530 25 H 0.003 0.997 26 H 0.021 0.979 27 H 0.016 0.984 28 H 0.248 0.752 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.426 0.574 32 H 0.436 0.564 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 -18.787 -14.544 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.330 5.330 3 C -0.382 4.382 4 H 0.079 0.921 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.801 3.199 8 H -0.206 1.206 9 H -0.216 1.216 10 H -0.201 1.201 11 C 0.000 4.000 12 C 0.289 3.711 13 O -0.392 6.392 14 C -0.477 4.477 15 C 0.334 3.666 16 N -0.334 5.334 17 N -0.259 5.259 18 C -0.085 4.085 19 C 0.414 3.586 20 O -0.419 6.419 21 N -0.305 5.305 22 C -0.062 4.062 23 C 0.369 3.631 24 O -0.407 6.407 25 H 0.021 0.979 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.281 0.719 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.509 -18.817 -14.438 25.553 hybrid contribution 0.058 1.176 0.042 1.178 sum 9.567 -17.641 -14.396 24.698 Atomic orbital electron populations 1.20444 0.82652 0.95584 0.97028 1.43906 1.02105 1.01237 1.85712 1.19373 0.97163 0.86705 1.34963 0.92121 1.25764 0.98490 1.01765 0.99087 1.70243 1.18741 1.27332 1.42728 0.85257 0.77656 0.79251 0.77760 1.20632 1.21610 1.20087 1.21035 0.97260 0.87748 0.93992 1.21166 0.74657 0.82227 0.93039 1.90183 1.47611 1.55010 1.46397 1.20203 1.31553 1.06345 0.89576 1.18043 0.79528 0.80625 0.88379 1.42921 1.35765 1.42354 1.12332 1.44853 1.53104 1.17245 1.10683 1.22617 1.04833 1.04965 0.76091 1.15430 0.79602 0.83205 0.80360 1.90995 1.43997 1.23832 1.83080 1.46221 1.53210 1.23506 1.07529 1.22072 1.02375 0.93442 0.88358 1.18008 0.76505 0.79499 0.89106 1.90867 1.55766 1.72589 1.21471 0.97877 0.96001 0.96523 0.94286 0.90882 0.91465 0.73822 0.71945 0.87934 0.87468 0.86331 0.89756 0.87902 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.47 8.96 127.77 1.15 11.61 16 2 N -0.61 -34.41 2.42 -731.30 -1.77 -36.18 16 3 C -0.25 -15.20 9.68 84.03 0.81 -14.39 16 4 H 0.06 3.61 7.85 -2.91 -0.02 3.58 16 5 C -0.06 -3.43 5.13 84.86 0.44 -3.00 16 6 N -0.94 -59.33 10.54 21.65 0.23 -59.10 16 7 Si 0.97 47.91 29.57 68.60 2.03 49.93 16 8 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 9 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 C 0.13 6.09 4.35 85.63 0.37 6.46 16 12 C 0.40 16.41 6.98 26.39 0.18 16.60 16 13 O -0.51 -21.67 13.83 -3.57 -0.05 -21.72 16 14 C -0.46 -14.38 5.92 -19.74 -0.12 -14.49 16 15 C 0.56 11.75 7.53 133.09 1.00 12.76 16 16 N -0.78 -11.98 7.96 -53.92 -0.43 -12.41 16 17 N -0.53 -8.67 2.99 -677.02 -2.03 -10.69 16 18 C 0.05 0.33 9.72 127.77 1.24 1.57 16 19 C 0.71 15.35 8.09 179.38 1.45 16.80 16 20 O -0.55 -12.52 15.12 -3.85 -0.06 -12.58 16 21 N -0.56 -13.85 2.95 -801.31 -2.37 -16.21 16 22 C 0.08 1.52 10.09 127.77 1.29 2.81 16 23 C 0.57 18.04 7.59 86.48 0.66 18.70 16 24 O -0.53 -20.13 13.35 -4.40 -0.06 -20.19 16 25 H 0.00 0.18 7.50 -2.39 -0.02 0.16 16 26 H 0.02 1.28 7.06 -2.38 -0.02 1.27 16 27 H 0.02 0.81 8.05 -2.39 -0.02 0.79 16 28 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.07 3.46 7.22 -2.39 -0.02 3.45 16 30 H 0.07 3.36 7.48 -2.39 -0.02 3.35 16 31 H 0.43 2.50 7.40 -92.71 -0.69 1.82 16 32 H 0.44 9.17 6.01 -92.71 -0.56 8.62 16 33 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.11 0.73 7.32 -2.38 -0.02 0.71 16 35 H 0.12 0.03 6.82 -2.39 -0.02 0.01 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.69 7.33 -2.39 -0.02 1.67 16 38 H 0.09 1.88 7.42 -2.39 -0.02 1.86 16 Total: -1.00 -82.80 316.13 3.86 -78.93 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -0.11 Total: 4.80 kcal Atomic # 6 Polarization: 46.94 SS G_CDS: 8.47 Total: 55.41 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -6.36 Total: -134.60 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.17 Total: -54.49 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.93 kcal Total: -82.80 3.86 -78.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120782451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.527 kcal (2) G-P(sol) polarization free energy of solvation -82.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds