Wall clock time and date at job start Tue Mar 31 2020 03:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34642 * 117.00202 * 2 1 4 4 O 1.21507 * 119.99682 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00170 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99990 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47479 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99578 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00755 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00646 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46990 * 59.99741 * 15 13 11 17 17 H 1.48497 * 109.47011 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47086 * 300.00255 * 15 13 11 19 19 C 1.46505 * 119.99455 * 0.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.08997 * 109.46979 * 60.00010 * 1 2 3 26 26 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47089 * 300.00164 * 1 2 3 28 28 H 0.97004 * 120.00072 * 0.02562 * 5 3 2 29 29 H 1.09004 * 109.47322 * 60.00441 * 6 5 3 30 30 H 1.09002 * 109.47440 * 300.00090 * 6 5 3 31 31 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 32 32 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 33 33 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 35 35 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 36 36 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 37 37 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 38 38 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0742 2.5755 0.0000 7 6 5.5682 2.3781 0.0013 8 8 6.0318 1.2573 0.0022 9 7 6.3893 3.4468 0.0016 10 6 7.8416 3.2550 0.0036 11 6 8.3379 3.1901 1.4249 12 1 7.6412 3.2829 2.2450 13 6 9.6814 3.0121 1.6787 14 7 10.5297 2.8986 0.6802 15 14 10.2967 2.9324 3.4406 16 1 9.6457 1.7964 4.1413 17 1 11.7687 2.7365 3.4425 18 1 9.9646 4.2003 4.1388 19 6 5.8293 4.8006 0.0012 20 6 5.6366 5.2650 1.4218 21 6 6.5442 5.9245 2.1639 22 6 5.9487 6.1616 3.4240 23 6 4.7126 5.6333 3.3766 24 8 4.5273 5.0957 2.1598 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9374 0.4566 0.0005 29 1 3.7810 3.1331 0.8895 30 1 3.7817 3.1320 -0.8905 31 1 8.0858 2.3247 -0.5094 32 1 8.3190 4.0893 -0.5103 33 1 11.4749 2.7730 0.8587 34 1 6.5131 5.4765 -0.5124 35 1 4.8683 4.7962 -0.5132 36 1 7.5370 6.2176 1.8558 37 1 6.3998 6.6694 4.2638 38 1 3.9902 5.6432 4.1793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162458468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:48 Heat of formation + Delta-G solvation = -88.875706 kcal Electronic energy + Delta-G solvation = -24268.205208 eV Core-core repulsion = 20499.480251 eV Total energy + Delta-G solvation = -3768.724957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14513 -40.45969 -39.22790 -36.63010 -35.49520 -34.42539 -32.76266 -32.54298 -30.09892 -29.14112 -27.61905 -26.38702 -25.24906 -22.85407 -21.35254 -21.20513 -20.38710 -19.44544 -18.40212 -17.20650 -16.98528 -16.65877 -16.54067 -16.06333 -15.71235 -15.33263 -15.04040 -14.61871 -14.24146 -14.03427 -13.74107 -13.51500 -12.95979 -12.53361 -12.45007 -12.42077 -12.24799 -12.12448 -12.02332 -11.53230 -11.28449 -11.00533 -10.82837 -10.67658 -10.62329 -10.26676 -9.78288 -9.42823 -9.26551 -9.21852 -8.47463 -8.19311 -7.88919 -6.08602 -4.11667 2.03854 2.16046 2.81715 2.96937 3.11608 3.30168 3.34562 3.38057 3.42062 3.76915 4.33370 4.42154 4.78678 5.02778 5.03447 5.10323 5.16382 5.27184 5.34136 5.39158 5.44272 5.55790 5.62260 5.73215 6.10913 6.20972 6.34652 6.41517 6.47566 6.82529 6.94075 7.25569 7.34788 7.45534 7.54075 7.87747 8.08065 8.16185 8.34238 8.66325 8.93395 9.52997 10.99893 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.004880 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.397306 B = 5736.241684 C = 6715.676346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.577 6.577 5 N -0.693 5.693 6 C 0.113 3.887 7 C 0.505 3.495 8 O -0.529 6.529 9 N -0.587 5.587 10 C 0.245 3.755 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.192 3.808 20 C -0.035 4.035 21 C -0.165 4.165 22 C -0.214 4.214 23 C -0.050 4.050 24 O -0.179 6.179 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.419 0.581 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.246 2.904 -0.599 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.285 6.285 3 C 0.402 3.598 4 O -0.466 6.466 5 N -0.355 5.355 6 C -0.013 4.013 7 C 0.291 3.709 8 O -0.406 6.406 9 N -0.318 5.318 10 C 0.127 3.873 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.067 3.933 20 C -0.086 4.086 21 C -0.185 4.185 22 C -0.234 4.234 23 C -0.118 4.118 24 O -0.076 6.076 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.257 0.743 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.398 2.591 -0.776 15.633 hybrid contribution 0.769 -0.144 1.443 1.641 sum -14.628 2.447 0.666 14.846 Atomic orbital electron populations 1.23173 0.74552 1.03323 1.02670 1.86257 1.24041 1.31021 1.87185 1.17972 0.83197 0.82160 0.76517 1.90989 1.64725 1.34756 1.56146 1.44278 1.03061 1.10819 1.77309 1.21235 0.91028 0.84253 1.04778 1.20118 0.87634 0.85577 0.77554 1.90691 1.76900 1.23218 1.49767 1.48298 1.09612 1.03335 1.70571 1.19443 0.71258 0.98587 0.98025 1.21341 0.92595 1.49899 0.92018 0.92255 1.24876 0.96686 0.95111 0.97168 1.69914 1.03169 1.49659 1.30722 0.86614 0.77493 0.78704 0.85000 1.20321 1.21267 1.20153 1.19910 1.00193 0.85533 0.87630 1.22879 0.85824 1.03639 0.96251 1.21613 1.00494 1.02823 0.93599 1.21819 0.95557 1.06572 0.99426 1.23860 0.99367 1.01587 0.86955 1.83969 1.37801 1.63030 1.22792 0.91900 0.88075 0.91885 0.74268 0.87962 0.88580 0.93409 0.94500 0.92681 0.86902 0.89732 0.83146 0.84030 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -4.93 10.62 -40.33 -0.43 -5.36 16 3 C 0.65 10.08 8.75 54.05 0.47 10.55 16 4 O -0.58 -10.05 16.13 -19.28 -0.31 -10.36 16 5 N -0.69 -10.83 5.53 -66.47 -0.37 -11.19 16 6 C 0.11 1.79 4.71 -5.19 -0.02 1.77 16 7 C 0.51 9.86 7.74 -10.99 -0.09 9.78 16 8 O -0.53 -12.23 15.25 5.55 0.08 -12.14 16 9 N -0.59 -11.44 2.44 -176.43 -0.43 -11.87 16 10 C 0.25 5.92 5.20 -5.20 -0.03 5.89 16 11 C -0.52 -13.89 9.13 -34.44 -0.31 -14.21 16 12 H 0.06 1.64 7.64 -52.49 -0.40 1.24 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -25.58 13.29 55.43 0.74 -24.85 16 15 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.19 2.91 5.78 -5.19 -0.03 2.88 16 20 C -0.04 -0.59 6.85 -35.62 -0.24 -0.83 16 21 C -0.17 -2.85 10.39 -39.70 -0.41 -3.26 16 22 C -0.21 -3.31 10.91 -39.71 -0.43 -3.74 16 23 C -0.05 -0.71 12.09 29.41 0.36 -0.36 16 24 O -0.18 -2.92 9.56 5.68 0.05 -2.86 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.42 6.57 7.55 -40.82 -0.31 6.26 16 29 H 0.10 1.66 6.93 -51.93 -0.36 1.30 16 30 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 31 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.11 1.52 7.89 -51.93 -0.41 1.11 16 35 H 0.08 1.02 6.44 -51.93 -0.33 0.69 16 36 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 37 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 38 H 0.20 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -33.67 337.30 -5.04 -38.70 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.66 Total: 6.60 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 0.23 Total: 11.72 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.06 Total: -47.91 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.60 Total: -30.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.67 -5.04 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162458468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.173 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds