Wall clock time and date at job start Tue Mar 31 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30504 * 125.64999 * 2 1 4 4 C 1.34121 * 109.25569 * 180.02562 * 3 2 1 5 5 N 1.48032 * 125.98812 * 179.97438 * 4 3 2 6 6 O 1.21795 * 120.00003 * 0.02562 * 5 4 3 7 7 O 1.21806 * 119.99728 * 180.02562 * 5 4 3 8 8 C 1.34666 * 108.02399 * 359.97438 * 4 3 2 9 9 N 1.35039 * 125.64967 * 180.02562 * 2 1 3 10 10 C 1.46494 * 126.39779 * 359.93985 * 9 2 1 11 11 C 1.50709 * 109.46932 * 85.00345 * 10 9 2 12 12 O 1.21280 * 120.00070 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99973 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99951 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47224 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47155 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00188 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99740 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99765 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47154 * 89.99832 * 21 19 17 23 23 H 1.48500 * 109.46878 * 210.00468 * 21 19 17 24 24 H 1.48498 * 109.47103 * 329.99796 * 21 19 17 25 25 H 1.08994 * 109.47164 * 89.97181 * 1 2 3 26 26 H 1.08995 * 109.47176 * 209.97823 * 1 2 3 27 27 H 1.09005 * 109.47031 * 329.97805 * 1 2 3 28 28 H 1.08000 * 126.59536 * 180.02562 * 8 4 3 29 29 H 1.09000 * 109.47306 * 204.99577 * 10 9 2 30 30 H 1.08997 * 109.47689 * 325.00275 * 10 9 2 31 31 H 0.97003 * 120.00338 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47191 * 299.99809 * 14 13 11 33 33 H 1.08997 * 109.47140 * 60.00073 * 14 13 11 34 34 H 1.09004 * 109.47038 * 299.99898 * 15 14 13 35 35 H 1.09002 * 109.47420 * 59.99418 * 15 14 13 36 36 H 1.08995 * 109.47232 * 300.00020 * 16 15 14 37 37 H 1.09003 * 109.47564 * 60.00179 * 16 15 14 38 38 H 0.97006 * 119.99551 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7269 1.5855 -0.0013 6 8 4.5654 2.7927 -0.0009 7 8 5.8531 1.1216 -0.0022 8 6 3.5926 -0.6642 -0.0004 9 7 2.2940 -1.0973 -0.0005 10 6 1.8425 -2.4909 0.0001 11 6 1.5687 -2.9309 -1.4151 12 8 1.7341 -2.1564 -2.3336 13 7 1.1392 -4.1847 -1.6598 14 6 0.8726 -4.6122 -3.0355 15 6 0.4011 -6.0677 -3.0350 16 6 0.1220 -6.5139 -4.4715 17 6 -0.3430 -7.9474 -4.4709 18 1 -0.4303 -8.4864 -3.5391 19 6 -0.6560 -8.5712 -5.6601 20 7 -1.0622 -9.8220 -5.6594 21 14 -0.5043 -7.6391 -7.2718 22 1 0.8625 -7.8219 -7.8226 23 1 -1.5022 -8.1598 -8.2405 24 1 -0.7529 -6.1946 -7.0336 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.4776 -1.2831 -0.0003 29 1 2.6169 -3.1236 0.4338 30 1 0.9302 -2.5771 0.5903 31 1 1.0066 -4.8041 -0.9252 32 1 0.0983 -3.9793 -3.4690 33 1 1.7847 -4.5264 -3.6259 34 1 1.1757 -6.7004 -2.6016 35 1 -0.5110 -6.1540 -2.4443 36 1 -0.6528 -5.8812 -4.9045 37 1 1.0338 -6.4276 -5.0625 38 1 -1.2821 -10.2609 -6.4961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171500374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:00 Heat of formation + Delta-G solvation = 17.762542 kcal Electronic energy + Delta-G solvation = -22696.400584 eV Core-core repulsion = 18964.592559 eV Total energy + Delta-G solvation = -3731.808025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.41883 -41.92054 -40.00566 -36.67613 -36.01468 -34.92696 -33.59579 -32.74739 -31.76164 -29.42894 -28.78674 -27.17575 -25.72635 -23.23515 -22.12368 -21.57409 -20.96704 -20.25985 -19.32788 -18.62981 -18.11925 -17.65496 -17.33917 -16.83122 -16.10396 -15.93964 -15.57003 -14.99498 -14.74493 -14.32936 -14.19572 -13.91897 -13.37192 -13.13894 -12.97663 -12.84604 -12.23382 -12.12816 -11.76615 -11.59389 -11.33399 -11.28319 -11.18015 -11.04699 -10.95947 -10.45739 -10.19360 -9.97461 -9.81643 -9.48525 -9.37959 -9.33705 -8.67894 -6.18525 -4.18367 -0.00921 0.85629 1.16255 1.76043 2.02276 2.21833 2.77085 3.21529 3.30055 3.32314 3.61639 3.75518 3.87512 4.11810 4.18239 4.29135 4.32847 4.71616 4.97309 5.10814 5.12525 5.15111 5.23310 5.32946 5.36790 5.73325 5.91544 6.00965 6.18943 6.21494 6.36362 6.55878 6.84043 7.04028 7.07157 7.17667 7.60051 7.61718 7.70949 8.36095 8.84218 9.43218 10.94471 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.002378 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.605451 B =11771.191457 C =12029.051419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.263 3.737 3 N -0.447 5.447 4 C 0.045 3.955 5 N 0.067 4.933 6 O -0.134 6.134 7 O -0.164 6.164 8 C 0.071 3.929 9 N -0.430 5.430 10 C 0.078 3.922 11 C 0.490 3.510 12 O -0.524 6.524 13 N -0.714 5.714 14 C 0.113 3.887 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.526 4.526 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.206 0.794 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.404 0.596 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 15.162 16.337 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.002 4.002 3 N -0.168 5.168 4 C -0.164 4.164 5 N 0.589 4.411 6 O -0.355 6.355 7 O -0.374 6.374 8 C -0.071 4.071 9 N -0.112 5.112 10 C -0.048 4.048 11 C 0.272 3.728 12 O -0.399 6.399 13 N -0.366 5.366 14 C -0.009 4.009 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.564 4.564 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.223 0.777 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.238 0.762 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.712 15.798 15.529 22.461 hybrid contribution 0.639 -0.657 -0.654 1.126 sum 4.351 15.141 14.875 21.667 Atomic orbital electron populations 1.20413 0.82784 1.04937 1.05165 1.23473 0.96294 0.79082 1.01329 1.69722 0.98790 1.28788 1.19477 1.20503 0.87863 0.87442 1.20569 1.42233 1.00463 1.00889 0.97521 1.94581 1.92556 0.96157 1.52233 1.94561 1.07457 1.80649 1.54701 1.22280 0.88708 0.94006 1.02107 1.45113 1.05546 1.07788 1.52705 1.22014 1.05295 0.79695 0.97807 1.20442 0.78808 0.83208 0.90302 1.90835 1.51119 1.52676 1.45317 1.46099 1.66764 1.12344 1.11365 1.21783 1.01211 0.97549 0.80346 1.21723 1.00732 0.91241 1.01408 1.19498 0.96565 0.97593 0.91220 1.21049 1.45189 0.95140 0.94991 0.90987 1.25030 0.94402 0.94733 0.99238 1.69903 1.45354 1.11328 1.27296 0.86781 0.78201 0.80764 0.83566 1.20194 1.21253 1.18971 0.88589 0.89816 0.88001 0.77695 0.84675 0.84661 0.76173 0.91346 0.91413 0.91941 0.91896 0.96286 0.96732 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.19 36.01 0.37 -0.06 16 2 C 0.26 2.49 7.89 -155.42 -1.23 1.26 16 3 N -0.45 -5.78 11.23 -7.88 -0.09 -5.87 16 4 C 0.05 0.58 8.02 -145.54 -1.17 -0.59 16 5 N 0.07 0.96 4.45 32.62 0.15 1.10 16 6 O -0.13 -2.07 19.24 -29.46 -0.57 -2.64 16 7 O -0.16 -2.22 19.02 -29.46 -0.56 -2.78 16 8 C 0.07 0.65 11.25 -16.56 -0.19 0.46 16 9 N -0.43 -3.38 2.24 -115.19 -0.26 -3.64 16 10 C 0.08 0.33 6.37 -5.19 -0.03 0.30 16 11 C 0.49 4.44 7.90 -10.98 -0.09 4.35 16 12 O -0.52 -7.53 16.42 5.56 0.09 -7.44 16 13 N -0.71 -6.27 5.56 -60.29 -0.33 -6.61 16 14 C 0.11 1.49 5.67 -4.04 -0.02 1.47 16 15 C -0.11 -1.78 5.27 -26.74 -0.14 -1.92 16 16 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 17 C -0.53 -13.93 9.66 -34.44 -0.33 -14.26 16 18 H 0.07 2.03 7.99 -52.49 -0.42 1.61 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 21 Si 0.88 20.80 27.47 -169.99 -4.67 16.14 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.22 7.17 -51.93 -0.37 -0.15 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 29 H 0.14 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.14 0.11 7.21 -51.93 -0.37 -0.26 16 31 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 37 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -36.93 341.04 -8.19 -45.13 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -4.83 Total: -5.14 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.04 Total: -7.55 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.24 Total: -40.86 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.04 Total: -12.86 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.93 -8.19 -45.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.891 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds