Wall clock time and date at job start Tue Mar 31 2020 03:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47049 * 180.02562 * 16 14 13 18 18 N 1.46505 * 109.47336 * 180.02562 * 17 16 14 19 19 C 1.34949 * 126.03450 * 125.00341 * 18 17 16 20 20 C 1.35318 * 107.73976 * 179.97438 * 19 18 17 21 21 N 1.48024 * 126.03551 * 179.97438 * 20 19 18 22 22 O 1.21798 * 119.99833 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99831 * 180.02562 * 21 20 19 24 24 C 1.39862 * 107.92369 * 0.02562 * 20 19 18 25 25 N 1.30841 * 108.20276 * 359.73455 * 24 20 19 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.09000 * 109.47444 * 300.00712 * 17 16 14 36 36 H 1.09000 * 109.46920 * 60.00019 * 17 16 14 37 37 H 1.08000 * 126.13070 * 359.97314 * 19 18 17 38 38 H 1.08001 * 125.90306 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 6 -1.3828 3.8936 2.5214 18 7 -1.7704 4.5487 3.7732 19 6 -2.2064 5.8193 3.9024 20 6 -2.4589 6.0372 5.2138 21 7 -2.9555 7.2992 5.8070 22 8 -3.1734 8.2627 5.0945 23 8 -3.1453 7.3743 7.0078 24 6 -2.1666 4.8598 5.9099 25 7 -1.7589 3.9651 5.0466 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -1.4143 4.6181 1.7076 36 1 -2.0739 3.0781 2.3085 37 1 -2.3315 6.5341 3.1025 38 1 -2.2646 4.7131 6.9754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183800748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:08 Heat of formation + Delta-G solvation = 9.313359 kcal Electronic energy + Delta-G solvation = -23054.702257 eV Core-core repulsion = 19322.527848 eV Total energy + Delta-G solvation = -3732.174409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.42716 -42.37335 -40.76371 -37.52741 -37.12721 -35.59083 -34.32005 -32.96300 -32.35758 -31.45812 -29.00972 -27.30881 -25.80435 -24.76770 -22.67659 -22.59028 -21.80444 -21.08215 -20.01357 -19.47760 -19.01539 -18.54146 -17.89481 -17.27634 -17.22897 -16.73957 -16.36797 -15.87149 -15.64440 -15.09016 -14.64185 -14.53537 -14.42282 -13.72621 -13.52991 -13.43586 -13.16897 -12.92812 -12.90674 -12.67147 -12.62303 -12.37309 -12.21147 -12.19780 -12.05723 -12.00420 -11.58309 -11.12512 -11.06577 -10.79714 -10.57232 -10.48486 -9.64604 -8.17583 -6.34440 -0.80608 0.21236 0.38326 1.14889 1.23417 1.44605 1.44851 1.52770 1.79609 2.34005 2.58251 3.04584 3.12500 3.35972 3.49856 3.66203 3.92877 3.95995 4.08546 4.32959 4.50010 4.56284 4.58357 4.67146 4.76309 4.82048 5.06852 5.23014 5.27021 5.39208 5.43180 5.55879 5.60766 5.79364 5.90262 5.96355 6.17098 6.60755 6.74027 6.94583 7.32623 7.54070 8.87133 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.002613 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.759445 B =10713.061275 C =11114.784161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.583 6.583 16 C -0.140 4.140 17 C 0.147 3.853 18 N -0.340 5.340 19 C 0.174 3.826 20 C -0.215 4.215 21 N 0.075 4.925 22 O -0.194 6.194 23 O -0.188 6.188 24 C 0.119 3.881 25 N -0.286 5.286 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.236 0.764 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 7.723 13.368 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.465 6.465 16 C -0.180 4.180 17 C 0.027 3.973 18 N -0.117 5.117 19 C 0.019 3.981 20 C -0.313 4.313 21 N 0.585 4.415 22 O -0.402 6.402 23 O -0.398 6.398 24 C -0.071 4.071 25 N -0.106 5.106 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.252 0.748 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.367 5.715 11.932 15.654 hybrid contribution 0.796 0.935 0.112 1.233 sum -7.571 6.650 12.043 15.703 Atomic orbital electron populations 1.21678 0.96688 0.99150 1.00494 1.21800 0.94015 0.99271 1.01156 1.18347 0.93393 0.89167 0.81536 0.97832 1.21567 0.91729 1.38907 1.06566 0.91154 1.25711 1.02953 0.94472 0.95166 1.70024 1.37012 1.38319 1.09831 0.85504 0.79584 0.78426 0.77465 1.19144 1.21360 1.19668 1.46272 1.15730 1.55741 1.17590 1.20689 0.81886 0.78687 0.89532 1.90701 1.52041 1.61369 1.42371 1.21772 0.97081 1.03004 0.96158 1.21888 0.96129 1.00203 0.79041 1.49067 1.46282 1.08329 1.07999 1.22935 0.89746 0.88070 0.97387 1.21173 1.26721 0.88694 0.94759 1.42674 0.96947 1.01414 1.00422 1.94541 1.56626 1.28722 1.60347 1.94537 1.57194 1.90191 0.97915 1.24400 0.93429 0.86936 1.02329 1.77791 1.23770 1.21180 0.87818 0.93307 0.95247 0.93943 0.91258 0.94297 0.92625 0.76149 0.86667 0.86614 0.84783 0.87663 0.74774 0.75355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.52 71.98 0.61 -4.41 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.50 16 3 C 0.28 13.09 2.24 44.24 0.10 13.19 16 4 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -27.33 8.73 25.60 0.22 -27.11 16 6 H 0.07 3.27 7.74 -2.91 -0.02 3.25 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -50.22 11.29 21.45 0.24 -49.97 16 9 Si 0.97 40.42 29.54 68.60 2.03 42.45 16 10 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 N -0.70 -24.87 5.02 -446.10 -2.24 -27.11 16 14 C 0.51 15.53 6.40 87.66 0.56 16.09 16 15 O -0.58 -22.08 13.12 -3.03 -0.04 -22.12 16 16 C -0.14 -2.61 5.89 29.85 0.18 -2.44 16 17 C 0.15 2.30 5.80 86.38 0.50 2.80 16 18 N -0.34 -5.14 3.68 -348.05 -1.28 -6.42 16 19 C 0.17 2.31 11.13 83.54 0.93 3.24 16 20 C -0.21 -3.72 7.11 36.09 0.26 -3.47 16 21 N 0.07 1.67 4.45 -47.13 -0.21 1.46 16 22 O -0.19 -4.62 19.02 18.89 0.36 -4.27 16 23 O -0.19 -4.56 19.05 18.89 0.36 -4.20 16 24 C 0.12 1.84 11.75 85.23 1.00 2.84 16 25 N -0.29 -5.04 12.42 -57.03 -0.71 -5.75 16 26 H 0.05 1.85 5.64 -2.39 -0.01 1.84 16 27 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 3.64 5.95 -2.39 -0.01 3.62 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.40 12.00 8.54 -92.70 -0.79 11.20 16 33 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.13 1.72 8.03 -2.39 -0.02 1.70 16 36 H 0.11 1.82 8.10 -2.39 -0.02 1.81 16 37 H 0.24 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.23 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -66.21 333.63 3.79 -62.41 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.31 Total: 16.94 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.98 Total: -3.42 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -4.20 Total: -87.80 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: 0.68 Total: -30.58 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -66.21 3.79 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183800748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.727 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds