Wall clock time and date at job start Tue Mar 31 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46975 * 2 1 4 4 H 1.08996 * 109.47171 * 54.99958 * 3 2 1 5 5 C 1.50701 * 109.47057 * 174.99932 * 3 2 1 6 6 H 1.08002 * 120.00422 * 119.99540 * 5 3 2 7 7 C 1.37886 * 119.99984 * 300.00045 * 5 3 2 8 8 N 1.31516 * 119.99664 * 179.97438 * 7 5 3 9 9 Si 1.86790 * 119.99917 * 359.97438 * 7 5 3 10 10 H 1.48509 * 109.47120 * 90.00152 * 9 7 5 11 11 H 1.48500 * 109.47294 * 210.00167 * 9 7 5 12 12 H 1.48504 * 109.47378 * 330.00401 * 9 7 5 13 13 O 1.45193 * 109.46905 * 294.99733 * 3 2 1 14 14 C 1.34228 * 116.99999 * 90.00561 * 13 3 2 15 15 O 1.20822 * 120.00042 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99933 * 179.97438 * 14 13 3 17 17 N 1.46504 * 109.46993 * 179.97438 * 16 14 13 18 18 C 1.36835 * 119.69298 * 89.99756 * 17 16 14 19 19 C 1.35018 * 119.68617 * 179.72271 * 18 17 16 20 20 C 1.41569 * 119.11424 * 0.02562 * 19 18 17 21 21 O 1.21786 * 120.30810 * 180.02562 * 20 19 18 22 22 N 1.34840 * 119.38972 * 359.97438 * 20 19 18 23 23 C 1.46493 * 119.87148 * 179.97438 * 22 20 19 24 24 C 1.34546 * 119.68776 * 269.72461 * 17 16 14 25 25 O 1.21586 * 119.53577 * 0.27657 * 24 17 16 26 26 H 1.08995 * 109.47286 * 59.99769 * 1 2 3 27 27 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46907 * 300.00119 * 1 2 3 29 29 H 1.08996 * 109.47526 * 239.99473 * 2 1 3 30 30 H 1.09002 * 109.47130 * 119.99588 * 2 1 3 31 31 H 0.97002 * 119.99670 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.46966 * 59.99792 * 16 14 13 33 33 H 1.08993 * 109.46967 * 299.99489 * 16 14 13 34 34 H 1.08004 * 120.15300 * 359.74675 * 18 17 16 35 35 H 1.08001 * 120.44090 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47342 * 0.02562 * 23 22 20 37 37 H 1.09008 * 109.46961 * 120.00301 * 23 22 20 38 38 H 1.09001 * 109.47536 * 240.00099 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2281 8 7 5.4540 0.8796 1.3358 9 14 3.0963 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7880 0.8094 2.6395 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4225 -2.5085 17 7 -1.3032 4.0321 -2.2699 18 6 -1.3786 5.3149 -1.7997 19 6 -2.5866 5.8785 -1.5852 20 6 -3.7552 5.1255 -1.8525 21 8 -4.8560 5.6126 -1.6672 22 7 -3.6384 3.8643 -2.3151 23 6 -4.8407 3.0754 -2.5946 24 6 -2.4215 3.3272 -2.5204 25 8 -2.3315 2.1888 -2.9378 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8771 0.4811 2.1125 32 1 -0.0711 2.6984 -3.3194 33 1 0.7245 4.1968 -2.7810 34 1 -0.4760 5.8740 -1.6015 35 1 -2.6603 6.8903 -1.2147 36 1 -5.7260 3.6704 -2.3705 37 1 -4.8517 2.7903 -3.6467 38 1 -4.8390 2.1785 -1.9752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187989612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:18 Heat of formation + Delta-G solvation = -129.718166 kcal Electronic energy + Delta-G solvation = -24634.188122 eV Core-core repulsion = 20863.692103 eV Total energy + Delta-G solvation = -3770.496019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.50351 -41.57574 -40.15268 -38.58435 -37.63379 -36.38379 -35.57066 -33.98443 -33.13898 -30.17238 -29.48401 -28.68118 -25.15632 -24.87726 -24.56818 -23.14766 -21.62130 -20.36609 -19.52360 -19.03662 -18.55870 -18.20865 -18.06752 -17.59448 -17.27969 -16.65727 -16.33833 -16.16655 -15.39856 -15.34075 -14.87323 -14.80820 -14.64218 -14.34339 -14.27308 -13.91392 -13.64545 -13.36918 -13.31840 -13.19070 -13.10009 -12.95755 -12.60582 -12.13202 -12.05354 -11.69366 -11.55205 -11.46397 -11.34167 -11.16022 -10.96013 -10.75910 -9.71494 -8.44812 -6.52532 -0.01363 0.60395 0.83930 1.17573 1.22791 1.30167 1.38235 1.71284 2.00333 2.18037 2.43321 2.87752 3.43588 3.54901 3.69711 3.89479 4.05796 4.12744 4.13760 4.19800 4.24524 4.29808 4.33354 4.52263 4.54871 4.59526 4.68815 4.87688 4.89505 4.97362 5.06108 5.27180 5.33087 5.34120 5.63562 6.04063 6.13659 6.31565 6.52621 6.71676 6.80646 7.11974 8.70578 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.004032 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.089110 B = 6941.986265 C = 7155.369704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.148 4.148 3 C 0.205 3.795 4 H 0.033 0.967 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.036 3.964 8 N -0.927 5.927 9 Si 0.931 3.069 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.257 1.257 13 O -0.344 6.344 14 C 0.432 3.568 15 O -0.534 6.534 16 C 0.126 3.874 17 N -0.520 5.520 18 C 0.198 3.802 19 C -0.306 4.306 20 C 0.539 3.461 21 O -0.557 6.557 22 N -0.560 5.560 23 C 0.075 3.925 24 C 0.692 3.308 25 O -0.562 6.562 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.275 0.725 32 H 0.151 0.849 33 H 0.197 0.803 34 H 0.229 0.771 35 H 0.197 0.803 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.360 8.428 -9.033 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.151 3.849 4 H 0.050 0.950 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.165 4.165 8 N -0.565 5.565 9 Si 0.757 3.243 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.182 1.182 13 O -0.259 6.259 14 C 0.275 3.725 15 O -0.424 6.424 16 C 0.004 3.996 17 N -0.239 5.239 18 C 0.076 3.924 19 C -0.332 4.332 20 C 0.338 3.662 21 O -0.436 6.436 22 N -0.303 5.303 23 C -0.065 4.065 24 C 0.395 3.605 25 O -0.437 6.437 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.214 0.786 34 H 0.246 0.754 35 H 0.214 0.786 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.912 7.856 -8.792 19.010 hybrid contribution -0.144 -0.681 1.050 1.260 sum -15.056 7.175 -7.742 18.387 Atomic orbital electron populations 1.21763 0.94994 1.01641 1.01046 1.22296 0.95925 0.98106 1.02183 1.20626 0.94018 0.89356 0.80904 0.94952 1.20963 0.89511 1.39707 1.07139 0.92645 1.25446 0.95875 0.95618 0.99512 1.69939 1.10177 1.45437 1.30957 0.86118 0.79393 0.80203 0.78608 1.18183 1.21157 1.18187 1.86464 1.35600 1.62707 1.41108 1.24582 0.79804 0.76856 0.91236 1.90663 1.55518 1.59056 1.37196 1.21628 0.82302 1.02672 0.93044 1.44509 1.06207 1.13752 1.59457 1.23127 1.02340 0.81740 0.85171 1.22088 0.88849 1.05174 1.17046 1.18000 0.91841 0.80189 0.76120 1.90840 1.29665 1.69821 1.53244 1.46470 1.07780 1.16405 1.59694 1.22006 0.85110 0.95877 1.03556 1.16012 0.80764 0.84478 0.79202 1.91013 1.85484 1.16871 1.50289 0.93657 0.91366 0.93825 0.90678 0.92452 0.91587 0.83154 0.78577 0.75416 0.78631 0.87762 0.89108 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.57 71.98 0.62 -4.57 16 2 C -0.15 -6.30 5.15 30.59 0.16 -6.15 16 3 C 0.21 9.58 1.84 29.85 0.05 9.63 16 4 H 0.03 1.61 6.21 -2.39 -0.01 1.60 16 5 C -0.54 -29.40 9.48 25.60 0.24 -29.16 16 6 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 7 C 0.04 1.98 5.45 84.66 0.46 2.45 16 8 N -0.93 -54.56 13.96 21.45 0.30 -54.26 16 9 Si 0.93 42.88 24.41 68.60 1.67 44.55 16 10 H -0.26 -11.10 6.83 99.48 0.68 -10.42 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.26 -11.61 6.53 99.48 0.65 -10.96 16 13 O -0.34 -13.52 9.81 -51.40 -0.50 -14.03 16 14 C 0.43 13.72 6.48 71.24 0.46 14.18 16 15 O -0.53 -20.12 13.57 21.98 0.30 -19.82 16 16 C 0.13 2.30 5.93 85.63 0.51 2.80 16 17 N -0.52 -10.13 2.10 -660.90 -1.39 -11.51 16 18 C 0.20 2.57 10.38 83.17 0.86 3.44 16 19 C -0.31 -5.00 10.00 22.35 0.22 -4.77 16 20 C 0.54 13.15 7.45 85.05 0.63 13.79 16 21 O -0.56 -16.67 16.44 -4.62 -0.08 -16.75 16 22 N -0.56 -13.73 2.96 -806.44 -2.39 -16.11 16 23 C 0.08 1.56 10.00 127.77 1.28 2.84 16 24 C 0.69 17.76 8.12 179.18 1.45 19.21 16 25 O -0.56 -17.38 15.79 -3.99 -0.06 -17.44 16 26 H 0.04 1.71 6.06 -2.39 -0.01 1.70 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.04 1.72 7.80 -2.39 -0.02 1.70 16 29 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.06 2.52 3.22 -2.39 -0.01 2.52 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.15 2.62 7.37 -2.39 -0.02 2.60 16 33 H 0.20 1.40 8.03 -2.39 -0.02 1.38 16 34 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.10 2.06 6.90 -2.39 -0.02 2.05 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.66 318.97 5.82 -72.85 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.01 Total: 8.85 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.95 Total: 23.68 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.48 Total: -81.89 kcal Atomic # 8 Polarization: -67.69 SS G_CDS: -0.34 Total: -68.03 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.67 Total: 44.55 kcal Total: -78.66 5.82 -72.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187989612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.871 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds