Wall clock time and date at job start Tue Mar 31 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47238 * 2 1 4 4 C 1.46506 * 119.99878 * 270.00209 * 3 2 1 5 5 C 1.50699 * 109.47166 * 270.00094 * 4 3 2 6 6 H 1.08007 * 119.99583 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00015 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99594 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99913 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47417 * 89.99818 * 9 7 5 11 11 H 1.48502 * 109.46881 * 210.00108 * 9 7 5 12 12 H 1.48505 * 109.46992 * 329.99655 * 9 7 5 13 13 C 1.34769 * 119.99855 * 90.00057 * 3 2 1 14 14 O 1.21288 * 120.00113 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00261 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47116 * 179.97438 * 15 13 3 17 17 C 1.34784 * 126.58666 * 125.00361 * 16 15 13 18 18 C 1.36669 * 106.83742 * 180.25974 * 17 16 15 19 19 C 1.47378 * 125.78020 * 179.73052 * 18 17 16 20 20 O 1.21518 * 120.00376 * 0.02562 * 19 18 17 21 21 O 1.34755 * 119.99809 * 180.02562 * 19 18 17 22 22 C 1.45206 * 116.99858 * 180.02562 * 21 19 18 23 23 N 1.34445 * 108.43352 * 359.57094 * 18 17 16 24 24 N 1.28756 * 109.51636 * 0.43706 * 23 18 17 25 25 H 1.09000 * 109.46963 * 299.99554 * 1 2 3 26 26 H 1.08996 * 109.47242 * 59.99986 * 1 2 3 27 27 H 1.09003 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46525 * 239.99695 * 2 1 3 29 29 H 1.09005 * 109.47260 * 120.00236 * 2 1 3 30 30 H 1.08998 * 109.47112 * 29.99907 * 4 3 2 31 31 H 1.08997 * 109.46520 * 149.99832 * 4 3 2 32 32 H 0.97002 * 119.99186 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47150 * 59.99946 * 15 13 3 34 34 H 1.09000 * 109.47052 * 300.00031 * 15 13 3 35 35 H 1.08002 * 126.57778 * 359.97438 * 17 16 15 36 36 H 1.08993 * 109.47352 * 59.99998 * 22 21 19 37 37 H 1.09002 * 109.46608 * 180.02562 * 22 21 19 38 38 H 1.08999 * 109.46926 * 299.99467 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3904 -2.8776 8 7 5.3915 2.1841 -3.2570 9 14 3.0134 3.4371 -3.9280 10 1 3.1172 4.8570 -3.5058 11 1 3.4064 3.3149 -5.3549 12 1 1.6135 2.9713 -3.7586 13 6 2.2430 2.0164 1.1671 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3102 2.2033 3.5858 17 6 1.4916 2.5460 4.6002 18 6 2.1924 3.4023 5.4024 19 6 1.6881 4.0374 6.6330 20 8 0.5557 3.8131 7.0125 21 8 2.4828 4.8670 7.3373 22 6 1.9200 5.4564 8.5392 23 7 3.4208 3.5643 4.8807 24 7 3.5244 2.8705 3.8009 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 5.7175 2.5746 -4.0830 33 1 2.6229 0.4187 2.5298 34 1 0.9445 1.0113 2.5302 35 1 0.4752 2.2119 4.7480 36 1 1.6348 4.6653 9.2326 37 1 2.6622 6.1018 9.0091 38 1 1.0407 6.0450 8.2778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269661763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:32 Heat of formation + Delta-G solvation = -36.498961 kcal Electronic energy + Delta-G solvation = -23490.481997 eV Core-core repulsion = 19756.321016 eV Total energy + Delta-G solvation = -3734.160980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.38443 -41.23764 -40.78493 -37.55036 -37.14931 -35.75638 -34.82387 -32.34657 -31.93568 -30.63593 -29.08255 -28.35709 -24.96708 -24.83780 -24.28689 -23.20243 -22.07303 -20.33742 -19.17735 -19.10488 -18.39237 -18.14384 -17.67728 -17.45989 -16.82374 -16.57467 -16.27070 -15.98020 -15.60897 -14.88355 -14.84246 -14.69777 -14.53581 -14.20008 -13.96895 -13.72368 -13.39365 -13.27085 -13.14455 -12.89190 -12.58147 -12.48478 -12.31120 -12.06682 -11.90394 -11.86255 -11.81460 -11.81296 -11.74811 -10.85150 -10.77081 -10.47295 -9.50512 -8.35490 -6.40591 -0.02642 0.38582 0.85438 1.30183 1.35315 1.42327 1.57383 1.65286 1.89148 2.15332 2.28831 2.99240 3.11513 3.27179 3.51593 3.74587 3.80261 3.93516 4.19243 4.30102 4.31051 4.37831 4.42581 4.53930 4.64929 4.74656 4.78548 4.86760 5.03550 5.05673 5.19104 5.23770 5.43358 5.48125 5.58170 6.20083 6.49474 6.56224 6.62276 6.89158 7.16337 7.28858 8.81560 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.003396 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.515453 B = 8243.141886 C = 8897.397700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 N -0.591 5.591 4 C 0.227 3.773 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.233 1.233 13 C 0.484 3.516 14 O -0.577 6.577 15 C 0.106 3.894 16 N -0.342 5.342 17 C 0.133 3.867 18 C -0.122 4.122 19 C 0.566 3.434 20 O -0.517 6.517 21 O -0.357 6.357 22 C 0.028 3.972 23 N -0.218 5.218 24 N -0.074 5.074 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.157 0.843 34 H 0.195 0.805 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 -5.224 18.265 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.032 4.032 3 N -0.322 5.322 4 C 0.105 3.895 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.156 1.156 13 C 0.270 3.730 14 O -0.456 6.456 15 C -0.017 4.017 16 N -0.125 5.125 17 C -0.024 4.024 18 C -0.259 4.259 19 C 0.410 3.590 20 O -0.406 6.406 21 O -0.272 6.272 22 C -0.064 4.064 23 N -0.092 5.092 24 N -0.055 5.055 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.174 0.826 34 H 0.212 0.788 35 H 0.278 0.722 36 H 0.092 0.908 37 H 0.147 0.853 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.154 -4.452 17.688 23.714 hybrid contribution -0.417 0.604 -0.608 0.953 sum -15.571 -3.848 17.081 23.431 Atomic orbital electron populations 1.22209 0.93363 1.04045 1.02568 1.21982 0.96007 0.80331 1.04886 1.47999 1.63598 1.15472 1.05157 1.19299 0.94788 0.92936 0.82470 1.21574 0.97186 1.32056 1.06570 0.95159 1.25858 0.96651 0.97213 0.99128 1.70056 1.17461 1.46599 1.24485 0.85748 0.80720 0.78820 0.77827 1.20769 1.20103 1.15586 1.20997 0.78421 0.86968 0.86566 1.90786 1.46707 1.20627 1.87525 1.22411 1.09037 0.90849 0.79387 1.50203 1.10772 1.32896 1.18659 1.24065 0.99213 0.93428 0.85720 1.20588 0.93592 1.10052 1.01701 1.19319 0.82514 0.75925 0.81275 1.90843 1.19094 1.61489 1.69135 1.86652 1.45065 1.56580 1.38941 1.23673 1.01323 0.98691 0.82727 1.74797 1.17838 1.13707 1.02907 1.82324 1.03447 1.08700 1.10995 0.90880 0.93823 0.88456 0.90808 0.87361 0.92763 0.96711 0.92332 0.82596 0.78828 0.72211 0.90827 0.85307 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 71.98 0.74 -1.59 16 2 C 0.09 1.93 5.93 86.38 0.51 2.44 16 3 N -0.59 -20.52 2.46 -826.14 -2.03 -22.55 16 4 C 0.23 10.39 4.23 85.63 0.36 10.75 16 5 C -0.54 -30.70 9.94 25.60 0.25 -30.44 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.56 5.47 84.65 0.46 1.02 16 8 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 9 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 13 C 0.48 16.97 7.71 87.66 0.68 17.64 16 14 O -0.58 -27.97 15.31 -3.05 -0.05 -28.02 16 15 C 0.11 2.06 5.57 85.63 0.48 2.54 16 16 N -0.34 -8.88 3.41 -350.80 -1.20 -10.08 16 17 C 0.13 2.67 11.27 83.87 0.95 3.61 16 18 C -0.12 -3.38 7.02 40.78 0.29 -3.09 16 19 C 0.57 14.60 7.96 70.23 0.56 15.16 16 20 O -0.52 -13.20 16.65 19.78 0.33 -12.87 16 21 O -0.36 -8.80 10.57 -56.66 -0.60 -9.40 16 22 C 0.03 0.42 10.57 113.37 1.20 1.62 16 23 N -0.22 -7.73 12.39 -50.04 -0.62 -8.35 16 24 N -0.07 -2.74 12.88 37.02 0.48 -2.27 16 25 H 0.07 0.72 7.22 -2.39 -0.02 0.71 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.88 8.07 -2.38 -0.02 1.86 16 29 H 0.11 1.46 6.44 -2.38 -0.02 1.44 16 30 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 31 H 0.01 0.75 6.85 -2.39 -0.02 0.73 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.16 2.23 7.40 -2.39 -0.02 2.22 16 34 H 0.19 1.24 7.13 -2.39 -0.02 1.22 16 35 H 0.26 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -92.78 337.13 6.00 -86.78 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.03 Total: 0.77 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 6.47 Total: 19.67 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -3.07 Total: -102.85 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.32 Total: -50.29 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -92.78 6.00 -86.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269661763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.279 kcal (2) G-P(sol) polarization free energy of solvation -92.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds