Wall clock time and date at job start Tue Mar 31 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47358 * 89.99683 * 9 7 5 11 11 H 1.48498 * 109.46924 * 210.00000 * 9 7 5 12 12 H 1.48500 * 109.47029 * 329.99851 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 S 1.81397 * 109.47319 * 179.72771 * 15 13 3 17 17 C 1.76201 * 103.00012 * 180.02562 * 16 15 13 18 18 N 1.32473 * 120.14091 * 359.97438 * 17 16 15 19 19 C 1.32449 * 119.98463 * 180.02562 * 18 17 16 20 20 C 1.37891 * 120.28644 * 0.02562 * 19 18 17 21 21 N 1.32482 * 120.29017 * 359.97438 * 20 19 18 22 22 C 1.32383 * 120.00276 * 359.70928 * 21 20 19 23 23 N 1.39179 * 120.14148 * 180.27475 * 22 21 20 24 24 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 26 26 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 27 27 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 28 28 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 29 29 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 30 30 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 31 31 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 34 34 H 1.08007 * 119.85439 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.85975 * 179.97438 * 20 19 18 36 36 H 0.96998 * 120.00062 * 180.30769 * 23 22 21 37 37 H 0.97003 * 119.99820 * 0.31554 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 5.3913 2.1821 -3.2578 9 14 3.0131 3.4348 -3.9293 10 1 3.1166 4.8551 -3.5083 11 1 3.4061 3.3115 -5.3560 12 1 1.6134 2.9689 -3.7594 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 16 2.3922 2.4149 3.8511 17 6 2.0422 1.4277 5.2680 18 7 1.5972 0.1886 5.1220 19 6 1.3346 -0.5505 6.1892 20 6 1.5217 -0.0359 7.4547 21 7 1.9663 1.2020 7.6137 22 6 2.2383 1.9487 6.5549 23 7 2.7109 3.2475 6.7186 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5819 1.6876 -2.0284 30 1 2.0958 3.1409 -1.1385 31 1 5.7172 2.5719 -4.0840 32 1 0.9422 1.0169 2.5319 33 1 2.6175 0.4159 2.5281 34 1 0.9723 -1.5608 6.0677 35 1 1.3050 -0.6445 8.3202 36 1 2.9053 3.7944 5.9414 37 1 2.8459 3.6058 7.6098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278598673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:48 Heat of formation + Delta-G solvation = 19.329818 kcal Electronic energy + Delta-G solvation = -20998.306660 eV Core-core repulsion = 17709.319468 eV Total energy + Delta-G solvation = -3288.987192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97714 -39.22159 -35.63024 -35.51260 -33.83074 -32.80231 -30.61255 -30.06483 -29.68598 -27.22872 -25.02552 -23.77663 -23.04531 -22.37266 -18.98002 -18.35616 -17.81999 -17.64393 -16.96093 -16.63188 -15.76313 -15.62019 -15.40211 -15.02568 -14.94090 -14.11044 -14.00673 -13.55191 -13.44162 -13.13794 -12.75994 -12.38082 -12.18384 -11.99473 -11.82565 -11.70826 -11.48937 -11.06413 -11.00014 -10.78612 -10.58109 -10.42324 -10.18806 -9.58428 -9.34306 -9.23925 -8.92758 -8.61123 -7.83883 -7.35714 -6.10755 -4.10124 0.67532 1.09802 1.28265 2.16362 3.11948 3.14831 3.27631 3.33455 3.35466 3.55099 3.73179 4.16783 4.32008 4.37474 4.70030 4.81082 5.01321 5.11418 5.13723 5.20668 5.22675 5.47552 5.51896 5.67696 5.95469 6.00533 6.10688 6.36465 6.63529 6.66253 6.88234 7.02008 7.23493 7.30737 7.57096 7.76445 8.09289 8.42570 8.77061 8.92901 9.48823 11.02541 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.003589 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.431697 B = 7798.844161 C = 8372.062070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.584 5.584 4 C 0.217 3.783 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.523 3.477 14 O -0.526 6.526 15 C -0.127 4.127 16 S 0.006 5.994 17 C 0.001 3.999 18 N -0.414 5.414 19 C -0.005 4.005 20 C 0.087 3.913 21 N -0.495 5.495 22 C 0.383 3.617 23 N -0.832 5.832 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.416 0.584 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 -5.338 18.626 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.316 5.316 4 C 0.097 3.903 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.308 3.692 14 O -0.403 6.403 15 C -0.278 4.278 16 S 0.243 5.757 17 C -0.259 4.259 18 N -0.132 5.132 19 C -0.168 4.168 20 C -0.075 4.075 21 N -0.219 5.219 22 C 0.135 3.865 23 N -0.378 5.378 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.185 0.815 35 H 0.186 0.814 36 H 0.248 0.752 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.963 -3.601 18.277 21.125 hybrid contribution -0.811 -0.754 -0.468 1.202 sum -10.774 -4.355 17.809 21.265 Atomic orbital electron populations 1.22224 0.96546 1.01785 1.02246 1.21520 0.93584 0.83538 1.03429 1.47841 1.63669 1.13511 1.06538 1.19704 0.97509 0.93410 0.79675 1.21310 0.95258 1.33100 1.07238 0.90687 1.24848 0.94999 0.95763 0.97320 1.69894 1.15128 1.44895 1.23526 0.86857 0.81436 0.81642 0.79804 1.19852 1.21036 1.19059 1.19430 0.78927 0.86705 0.84168 1.90713 1.45282 1.17768 1.86568 1.23743 1.07248 1.02488 0.94370 1.85832 1.81372 1.16454 0.92004 1.23995 1.07359 0.97120 0.97384 1.68707 1.08355 1.02854 1.33293 1.23295 1.03149 1.01266 0.89050 1.23305 0.94776 0.90925 0.98470 1.67968 1.16517 1.06848 1.30536 1.18766 0.91631 0.87672 0.88472 1.42280 1.72263 1.10981 1.12256 0.91778 0.92984 0.92126 0.89394 0.91190 0.94975 0.94439 0.92514 0.86716 0.86528 0.81536 0.81440 0.75197 0.76231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.57 5.93 -4.05 -0.02 1.55 16 3 N -0.58 -11.74 2.46 -175.06 -0.43 -12.17 16 4 C 0.22 5.22 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.52 10.52 7.69 -10.98 -0.08 10.44 16 14 O -0.53 -12.66 15.45 5.56 0.09 -12.57 16 15 C -0.13 -1.95 4.27 36.01 0.15 -1.80 16 16 S 0.01 0.09 19.61 -107.50 -2.11 -2.02 16 17 C 0.00 0.02 7.03 -16.53 -0.12 -0.10 16 18 N -0.41 -5.29 9.60 -11.78 -0.11 -5.40 16 19 C 0.00 -0.05 11.20 -17.41 -0.20 -0.24 16 20 C 0.09 0.80 11.20 -17.40 -0.19 0.61 16 21 N -0.49 -5.71 10.52 -12.05 -0.13 -5.83 16 22 C 0.38 4.68 7.79 -154.45 -1.20 3.47 16 23 N -0.83 -7.99 9.03 31.38 0.28 -7.70 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.62 7.23 -51.93 -0.38 0.25 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 28 H 0.07 0.92 6.43 -51.93 -0.33 0.58 16 29 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 30 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.11 1.55 7.20 -51.92 -0.37 1.17 16 33 H 0.12 1.70 7.39 -51.92 -0.38 1.31 16 34 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.42 3.87 7.39 -40.82 -0.30 3.57 16 37 H 0.41 3.01 8.96 -40.82 -0.37 2.65 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -35.19 329.23 -7.65 -42.84 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.56 Total: 3.92 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.75 Total: 4.00 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.39 Total: -57.83 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.11 Total: -2.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.19 -7.65 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278598673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.171 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds