Wall clock time and date at job start Tue Mar 31 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47358 * 89.99683 * 9 7 5 11 11 H 1.48498 * 109.46924 * 210.00000 * 9 7 5 12 12 H 1.48500 * 109.47029 * 329.99851 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 S 1.81397 * 109.47319 * 179.72771 * 15 13 3 17 17 C 1.76201 * 103.00012 * 180.02562 * 16 15 13 18 18 N 1.32473 * 120.14091 * 359.97438 * 17 16 15 19 19 C 1.32449 * 119.98463 * 180.02562 * 18 17 16 20 20 C 1.37891 * 120.28644 * 0.02562 * 19 18 17 21 21 N 1.32482 * 120.29017 * 359.97438 * 20 19 18 22 22 C 1.32383 * 120.00276 * 359.70928 * 21 20 19 23 23 N 1.39179 * 120.14148 * 180.27475 * 22 21 20 24 24 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 26 26 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 27 27 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 28 28 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 29 29 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 30 30 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 31 31 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 34 34 H 1.08007 * 119.85439 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.85975 * 179.97438 * 20 19 18 36 36 H 0.96998 * 120.00062 * 180.30769 * 23 22 21 37 37 H 0.97003 * 119.99820 * 0.31554 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 5.3913 2.1821 -3.2578 9 14 3.0131 3.4348 -3.9293 10 1 3.1166 4.8551 -3.5083 11 1 3.4061 3.3115 -5.3560 12 1 1.6134 2.9689 -3.7594 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 16 2.3922 2.4149 3.8511 17 6 2.0422 1.4277 5.2680 18 7 1.5972 0.1886 5.1220 19 6 1.3346 -0.5505 6.1892 20 6 1.5217 -0.0359 7.4547 21 7 1.9663 1.2020 7.6137 22 6 2.2383 1.9487 6.5549 23 7 2.7109 3.2475 6.7186 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5819 1.6876 -2.0284 30 1 2.0958 3.1409 -1.1385 31 1 5.7172 2.5719 -4.0840 32 1 0.9422 1.0169 2.5319 33 1 2.6175 0.4159 2.5281 34 1 0.9723 -1.5608 6.0677 35 1 1.3050 -0.6445 8.3202 36 1 2.9053 3.7944 5.9414 37 1 2.8459 3.6058 7.6098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278598673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:48 Heat of formation + Delta-G solvation = -7.018681 kcal Electronic energy + Delta-G solvation = -20999.449217 eV Core-core repulsion = 17709.319468 eV Total energy + Delta-G solvation = -3290.129748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80174 -40.81540 -37.11192 -36.43335 -34.90525 -34.65471 -32.24459 -31.25919 -30.58630 -29.02600 -25.86240 -24.71373 -24.45214 -24.06416 -20.35304 -19.26759 -19.13577 -18.89702 -18.44396 -18.11834 -17.18250 -16.72080 -16.49200 -16.18077 -16.01705 -15.77496 -15.02277 -14.83711 -14.74763 -14.54338 -14.21380 -13.89169 -13.68082 -13.36932 -13.14495 -12.83648 -12.61696 -12.55895 -12.42741 -12.05873 -11.98189 -11.85471 -11.74894 -11.55340 -10.89520 -10.83140 -10.17676 -9.83988 -9.50811 -8.34775 -8.34195 -6.39855 -0.14617 0.19189 0.27466 1.11032 1.33020 1.37213 1.45293 1.59287 2.22626 2.30821 2.34971 2.74125 2.99995 3.37939 3.41159 3.58766 3.95138 3.97361 4.05719 4.26663 4.28534 4.38652 4.50067 4.59820 4.76852 4.86955 4.96492 4.99851 5.32966 5.36517 5.44851 5.57359 5.86890 6.21065 6.28630 6.51469 6.53918 6.61881 6.98272 7.14329 7.28263 8.82699 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.003589 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.431697 B = 7798.844161 C = 8372.062070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.227 3.773 5 C -0.538 4.538 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.515 3.485 14 O -0.575 6.575 15 C -0.107 4.107 16 S -0.029 6.029 17 C -0.023 4.023 18 N -0.429 5.429 19 C -0.007 4.007 20 C 0.101 3.899 21 N -0.508 5.508 22 C 0.373 3.627 23 N -0.826 5.826 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.269 0.731 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.204 0.796 35 H 0.211 0.789 36 H 0.415 0.585 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 -6.888 20.020 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.321 5.321 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.301 3.699 14 O -0.456 6.456 15 C -0.259 4.259 16 S 0.207 5.793 17 C -0.281 4.281 18 N -0.147 5.147 19 C -0.171 4.171 20 C -0.062 4.062 21 N -0.232 5.232 22 C 0.125 3.875 23 N -0.371 5.371 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.220 0.780 35 H 0.228 0.772 36 H 0.248 0.752 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.629 -5.160 19.692 23.956 hybrid contribution 0.059 -0.446 -0.690 0.824 sum -12.570 -5.606 19.002 23.463 Atomic orbital electron populations 1.22149 0.93725 1.03821 1.02103 1.21841 0.95824 0.80848 1.04145 1.47939 1.63571 1.15242 1.05384 1.19362 0.94986 0.93135 0.82078 1.21543 0.97027 1.32246 1.06797 0.95296 1.25843 0.96709 0.97145 0.98923 1.70049 1.17450 1.46527 1.24460 0.85726 0.80518 0.79017 0.77770 1.20168 1.20026 1.15955 1.20188 0.77715 0.86360 0.85601 1.90679 1.47333 1.20070 1.87512 1.23499 1.08685 1.01839 0.91828 1.85895 1.82646 1.17659 0.93095 1.23663 1.10183 0.97769 0.96518 1.68628 1.08380 1.02765 1.34903 1.23965 1.02201 1.02371 0.88528 1.24098 0.91987 0.90195 0.99925 1.68100 1.17093 1.07928 1.30111 1.18903 0.91845 0.88405 0.88332 1.42282 1.71602 1.10413 1.12844 0.88587 0.92324 0.93070 0.90353 0.88906 0.92886 0.96079 0.92240 0.84430 0.85713 0.77956 0.77210 0.75235 0.75123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.77 16 2 C 0.10 2.77 5.93 86.38 0.51 3.29 16 3 N -0.59 -23.77 2.46 -826.15 -2.03 -25.80 16 4 C 0.23 10.95 4.23 85.63 0.36 11.31 16 5 C -0.54 -31.62 9.94 25.60 0.25 -31.37 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.70 5.47 84.65 0.46 1.17 16 8 N -0.94 -59.88 13.96 21.44 0.30 -59.58 16 9 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 13 C 0.51 21.01 7.69 87.66 0.67 21.69 16 14 O -0.58 -28.76 15.45 -3.04 -0.05 -28.81 16 15 C -0.11 -3.25 4.27 71.24 0.30 -2.94 16 16 S -0.03 -0.89 19.61 -56.49 -1.11 -2.00 16 17 C -0.02 -0.59 7.03 85.08 0.60 0.00 16 18 N -0.43 -10.02 9.60 -191.17 -1.83 -11.86 16 19 C -0.01 -0.10 11.20 84.52 0.95 0.84 16 20 C 0.10 1.48 11.20 84.51 0.95 2.42 16 21 N -0.51 -10.53 10.52 -192.03 -2.02 -12.55 16 22 C 0.37 8.70 7.79 133.27 1.04 9.74 16 23 N -0.83 -15.60 9.03 -54.64 -0.49 -16.10 16 24 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.22 7.23 -2.39 -0.02 1.20 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 28 H 0.09 2.25 6.43 -2.38 -0.02 2.24 16 29 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 30 H 0.02 1.09 6.85 -2.39 -0.02 1.08 16 31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.14 3.47 7.20 -2.39 -0.02 3.45 16 33 H 0.12 3.53 7.39 -2.39 -0.02 3.51 16 34 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.21 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.42 7.93 7.39 -92.71 -0.68 7.24 16 37 H 0.42 5.93 8.96 -92.71 -0.83 5.10 16 Total: -1.00 -80.43 329.23 1.04 -79.39 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.45 Total: 17.75 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.84 Total: 13.38 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -6.08 Total: -125.88 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.05 Total: -28.81 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -1.11 Total: -2.00 kcal Total: -80.43 1.04 -79.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278598673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.374 kcal (2) G-P(sol) polarization free energy of solvation -80.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds